Rh1DG326500

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002622
Physical Location & Seq
Reverse (-)
55134091 .. 55135706
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG326500.1

Sequence Viewer

Length: 789 bp
ATGCTGACTGGTATACTTCGCAGGGGTTTCACGCCATTACTTAATTTTACTTTACCCATGGCTGAAATTCTTAAATACCAGCCTGGTGGTAAAGTGGAAGAGCATATTGACTTGCTTGTAACTCATTTGGCTGATTGGTTAGAAGAAGAGCCGGGAAAGAACTTACTTTTTCATACTTTTAGCAACACTGGATGGTTAACGTATGGTGTAATGTTGGAGAAGTTCCAGAAGAGGCACGATCCTTCAATAATGGGCAGTATTCGGGGATGCGTTGTGGATTCCGCACCTGTTGCAGCGCCTGACCCGCAGGTCTGGACCTCTGGTTTCTCTGCAGCCTTTCTGAAAAAGCATAGTGTAGCAACAAAAGGGACCACCAGAGTAGACGCTAGTGAGTCAGGCATGGATGTTTTGATTGACAGCAAAGGAGTGGCACCTAAACCTGCAGTAACTGAGGCAGCTTTGCTTTTAGTTTTGGAGAAGTTCTTTGAGGTGGTTTTGAATCTTCCTACAGTGAACAGGAGGCTTTCTGATATTTTGGGCTTACTGTCAGCACGACAACCAAGCTGTCCGCAATTATATATCTACAGCTCGGCAGACAGAGTCATTCCTGCAGGATCTGTGGAGTCGTTCATAAAACAGCAGCGGAGGGCTGGATATGAGGTTAGGGCTTGCAACTTTGTCTCGACACCTCATGTTGATCATTTCAGAAATGACCAGAAGCTGTATACTTCTGAGCTAACTCAGTTTCTGGAGGACTGTGTGCTTGCTTGTTGCAAAAAGTATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

262

Amino Acids

29.15

Weight (kDa)

7.08

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 14 - 250 6.9e-51 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
Acc36I ACCTGC 2 cut(s) 298, 448
AccB1I GGYRCC 1 cut(s) 430
AccI GTMKAC 3 cut(s) 13, 381, 725
AciI CCGC 4 cut(s) 282, 305, 569, 643
AclWI GGATC 2 cut(s) 233, 622
AcsI RAATTY 1 cut(s) 66
AgsI TTSAA 2 cut(s) 246, 499
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 5 cut(s) 458, 564, 588, 721, 736
AluI AGCT 5 cut(s) 458, 564, 588, 721, 736
Alw26I GTCTC 1 cut(s) 685
AlwI GGATC 2 cut(s) 233, 622
AlwNI CAGNNNCTG 5 cut(s) 299, 449, 617, 721, 748
ApeKI GCWGC 4 cut(s) 293, 332, 455, 640
ApoI RAATTY 1 cut(s) 66
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 315, 369
AsuC2I CCSGG 1 cut(s) 153
AvaII GGWCC 2 cut(s) 315, 369
BanI GGYRCC 1 cut(s) 430
BbvI GCAGC 4 cut(s) 305, 344, 467, 652
BccI CCATC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 84
BclI TGATCA 1 cut(s) 697
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 5 cut(s) 330, 441, 507, 583, 609
BfoI RGCGCY 1 cut(s) 299
BfuAI ACCTGC 2 cut(s) 298, 448
BisI GCNGC 4 cut(s) 294, 333, 456, 641
BlsI GCNGC 4 cut(s) 295, 334, 457, 642
Bme1390I CCNGG 2 cut(s) 84, 153
Bme18I GGWCC 2 cut(s) 315, 369
BmgT120I GGNCC 2 cut(s) 315, 369
BmiI GGNNCC 2 cut(s) 370, 432
BmrFI CCNGG 2 cut(s) 84, 153
BmsI GCATC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 13, 193
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 3 cut(s) 197, 272, 409
BseMII CTCAG 3 cut(s) 441, 723, 755
BseNI ACTGG 2 cut(s) 13, 193
BseXI GCAGC 4 cut(s) 305, 344, 467, 652
BshNI GGYRCC 1 cut(s) 430
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 685
BsmFI GGGAC 1 cut(s) 382
Bsp143I GATC 3 cut(s) 238, 614, 697
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 4 cut(s) 282, 305, 569, 643
BspCNI CTCAG 3 cut(s) 442, 724, 754
BspLI GGNNCC 2 cut(s) 370, 432
BspMAI CTGCAG 3 cut(s) 334, 445, 613
BspMI ACCTGC 2 cut(s) 298, 448
BspPI GGATC 2 cut(s) 233, 622
BspQI GCTCTTC 2 cut(s) 93, 141
BspT107I GGYRCC 1 cut(s) 430
BsrI ACTGG 2 cut(s) 13, 193
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 3 cut(s) 238, 614, 697
BssNAI GTATAC 2 cut(s) 14, 726
BssT1I CCWWGG 1 cut(s) 57
Bst1107I GTATAC 2 cut(s) 14, 726
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 3 cut(s) 511, 546, 758
Bst6I CTCTTC 3 cut(s) 93, 141, 224
BstAPI GCANNNNNTGC 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 670, 765
BstDEI CTNAG 3 cut(s) 450, 732, 741
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 3 cut(s) 197, 272, 409
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 3 cut(s) 241, 617, 700
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 3 cut(s) 238, 614, 697
BstMWI GCNNNNNNNGC 2 cut(s) 290, 304
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 2 cut(s) 82, 151
BstSFI CTRYAG 5 cut(s) 330, 441, 507, 583, 609
BstV1I GCAGC 4 cut(s) 305, 344, 467, 652
BstX2I RGATCY 1 cut(s) 614
BstXI CCANNNNNNTGG 1 cut(s) 86
BstYI RGATCY 1 cut(s) 614
BstZ17I GTATAC 2 cut(s) 14, 726
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 3 cut(s) 197, 272, 409
BtsIMutI CAGTG 2 cut(s) 186, 516
BveI ACCTGC 2 cut(s) 298, 448
Cac8I GCNNGC 2 cut(s) 670, 765
CaiI CAGNNNCTG 5 cut(s) 299, 449, 617, 721, 748
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 315, 369
CseI GACGC 1 cut(s) 392
CviAII CATG 3 cut(s) 58, 400, 692
DdeI CTNAG 3 cut(s) 450, 732, 741
DpnI GATC 3 cut(s) 240, 616, 699
DpnII GATC 3 cut(s) 238, 614, 697
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 3 cut(s) 93, 141, 224
EarI CTCTTC 3 cut(s) 93, 141, 224
Eco130I CCWWGG 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 315, 369
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 61, 403, 695
FaqI GGGAC 1 cut(s) 382
FatI CATG 3 cut(s) 57, 399, 691
FauI CCCGC 1 cut(s) 312
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 3 cut(s) 13, 381, 725
Fnu4HI GCNGC 4 cut(s) 294, 333, 456, 641
FokI GGATG 3 cut(s) 204, 279, 416
Fsp4HI GCNGC 4 cut(s) 294, 333, 456, 641
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 297
GluI GCNGC 4 cut(s) 294, 333, 456, 641
GsuI CTGGAG 1 cut(s) 770
HaeII RGCGCY 1 cut(s) 299
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 392
HhaI GCGC 1 cut(s) 298
Hin1II CATG 3 cut(s) 61, 403, 695
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 5 cut(s) 278, 392, 499, 600, 623
HpaI GTTAAC 1 cut(s) 198
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 5 cut(s) 14, 198, 382, 514, 726
Hpy188I TCNGA 4 cut(s) 342, 529, 707, 733
Hpy188III TCNNGA 4 cut(s) 226, 313, 682, 749
Hpy8I GTNNAC 5 cut(s) 14, 198, 382, 514, 726
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 3 cut(s) 511, 546, 758
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 6 cut(s) 293, 332, 443, 611, 672, 774
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 304
HpyF3I CTNAG 3 cut(s) 450, 732, 741
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 3 cut(s) 61, 403, 695
HspAI GCGC 1 cut(s) 296
Ksp22I TGATCA 1 cut(s) 697
KspAI GTTAAC 1 cut(s) 198
Kzo9I GATC 3 cut(s) 238, 614, 697
LguI GCTCTTC 2 cut(s) 93, 141
Lsp1109I GCAGC 4 cut(s) 305, 344, 467, 652
LweI GCATC 1 cut(s) 257
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 118, 445
MalI GATC 3 cut(s) 240, 616, 699
MboI GATC 3 cut(s) 238, 614, 697
MboII GAAGA 5 cut(s) 110, 155, 158, 241, 494
MflI RGATCY 1 cut(s) 614
MluCI AATT 3 cut(s) 43, 66, 572
MlyI GAGTC 3 cut(s) 401, 609, 632
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 9 cut(s) 225, 328, 445, 481, 513, 639, 652, 699, 745
MseI TTAA 4 cut(s) 42, 72, 197, 787
MspA1I CMGCKG 1 cut(s) 643
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 84, 153
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 290, 304
NciI CCSGG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 57
NdeII GATC 3 cut(s) 238, 614, 697
NlaIII CATG 3 cut(s) 61, 403, 695
NlaIV GGNNCC 2 cut(s) 370, 432
NmeAIII GCCGAG 1 cut(s) 569
PciSI GCTCTTC 2 cut(s) 93, 141
PfeI GAWTC 2 cut(s) 278, 499
PflFI GACNNNGTC 1 cut(s) 599
PkrI GCNGC 4 cut(s) 295, 334, 457, 642
PleI GAGTC 3 cut(s) 400, 608, 631
PpsI GAGTC 3 cut(s) 400, 608, 631
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 370, 432
PspPI GGNCC 2 cut(s) 315, 369
PstI CTGCAG 3 cut(s) 334, 445, 613
PstNI CAGNNNCTG 5 cut(s) 299, 449, 617, 721, 748
PsuI RGATCY 1 cut(s) 614
PsyI GACNNNGTC 1 cut(s) 599
SapI GCTCTTC 2 cut(s) 93, 141
SaqAI TTAA 4 cut(s) 42, 72, 197, 787
SatI GCNGC 4 cut(s) 294, 333, 456, 641
Sau3AI GATC 3 cut(s) 238, 614, 697
Sau96I GGNCC 2 cut(s) 315, 369
SbfI CCTGCAGG 1 cut(s) 613
SchI GAGTC 3 cut(s) 401, 609, 632
ScrFI CCNGG 2 cut(s) 84, 153
SdaI CCTGCAGG 1 cut(s) 613
SfaNI GCATC 1 cut(s) 257
SfcI CTRYAG 5 cut(s) 330, 441, 507, 583, 609
SinI GGWCC 2 cut(s) 315, 369
Sse8387I CCTGCAGG 1 cut(s) 613
Sse9I AATT 3 cut(s) 43, 66, 572
SsiI CCGC 4 cut(s) 282, 305, 569, 643
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 82, 151
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 3 cut(s) 511, 546, 758
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 683
TasI AATT 3 cut(s) 43, 66, 572
TfiI GAWTC 2 cut(s) 278, 499
Tru1I TTAA 4 cut(s) 42, 72, 197, 787
Tru9I TTAA 4 cut(s) 42, 72, 197, 787
TscAI CASTG 2 cut(s) 193, 516
TseI GCWGC 4 cut(s) 293, 332, 455, 640
TspDTI ATGAA 2 cut(s) 161, 619
TspRI CASTG 2 cut(s) 193, 516
Tth111I GACNNNGTC 1 cut(s) 599
VpaK11BI GGWCC 2 cut(s) 315, 369
XapI RAATTY 1 cut(s) 66
XmiI GTMKAC 3 cut(s) 13, 381, 725
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.