Rw0G014000

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00624
OG0002622
Physical Location & Seq
Reverse (-)
13946 .. 26234
12289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014000.1

Sequence Viewer

Length: 969 bp
ATGGGTTCCTTGTCTGGAATCCTTCAACGCCCTCTAATCGCCGCCGCCGCTGTTGGCTTTGCTTCTTTTTCTTCCGACTTCTCCCTCATACTGCCCTCTCACAAATCCAACTCCAACGACTCCTCCTCGGATTTATCTACTTCAACAACAACAACTTTGTCATCGGACATTTTTCTTTCTAAACTCGCAAACCTCTCCTTTGTCTCCAGAATTCAAGTACCTATTCCCACCATTAACTTCCCAATTCCCAATTCCCACTGCAATTCCCTCTATTCGTCGGTTGCATCTTCCCCCGCTCTTCTTAAGCTCTATCACTCTGCACACTTGGCCAGAGCGCCCAACCCAACTCCATATAAACATGATACATCATCATCTGCTTCCGTCCCTGACGTCTCCTACATATGGCATTTGCCTGAGCCAAATTCTCTTGATGTTTTCGGCACCTCTGATTGTTCATCTGCAAAAATGAGGATTGTGCAAAAGCATCTCAAGAGGTATGCCGACTGGTATACTTCCCAGGGCTTTCACATCATTACCTTTACTTTACCCATGGCTGACATTCTCAAATACCAGCCTGGTGGTAAAGTCGAACACCACATTGACCTACTTGTCAGTCATTTGGCTGATTGGTTAGAAGAGGAGCAGGGAAAGAACCTGCTTTTTCATACTTTTAGCAACACCGGATGGTTAACGTATGGTGTAATGTTGGAGAAGTTCCAGAAGCACGATCCTTCTGTAATGGGCAGGATTCGGGGTTGCGTTGTGGATTCCGCACCTGTTGCAGCACCTGACCCGCAGGCTTCTGGTTTCTCTGTAGCCTTTCTGAAAAAGCATAGTGTAGCAACGAAAGGAACCACAGACGCTAGTGAGTCAGGGATGCTAGTGATGGCACCCAAACCTGCAGTAACTAAGGCAGCTTTGCTTTTAGTTTTGGAGAAGTTCTTTGAGGTGGTTTTGAATCTTCCTACA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

323

Amino Acids

35.06

Weight (kDa)

7.25

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF829 PF05705 160 - 322 1.5e-29 Eukaryotic protein of unknown function (DUF829)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 608
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 2 cut(s) 663, 907
AccB1I GGYRCC 2 cut(s) 440, 889
AccBSI CCGCTC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 509
AciI CCGC 6 cut(s) 42, 45, 48, 294, 771, 794
AclWI GGATC 1 cut(s) 722
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 2 cut(s) 210, 421
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 402
AflII CTTAAG 1 cut(s) 302
AgsI TTSAA 4 cut(s) 26, 144, 215, 958
AjnI CCWGG 2 cut(s) 516, 574
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AluBI AGCT 2 cut(s) 307, 917
AluI AGCT 2 cut(s) 307, 917
Alw26I GTCTC 2 cut(s) 208, 397
AlwI GGATC 1 cut(s) 722
AlwNI CAGNNNCTG 1 cut(s) 788
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 2 cut(s) 782, 914
ApoI RAATTY 2 cut(s) 210, 421
AspLEI GCGC 1 cut(s) 337
BalI TGGCCA 1 cut(s) 329
BanI GGYRCC 2 cut(s) 440, 889
BbvI GCAGC 2 cut(s) 794, 926
BccI CCATC 2 cut(s) 678, 880
BciT130I CCWGG 2 cut(s) 518, 576
BcoDI GTCTC 2 cut(s) 208, 397
BfaI CTAG 2 cut(s) 864, 881
BfmI CTRYAG 2 cut(s) 813, 900
BfoI RGCGCY 1 cut(s) 338
BfrI CTTAAG 1 cut(s) 302
BfuAI ACCTGC 2 cut(s) 663, 907
BisI GCNGC 5 cut(s) 42, 45, 48, 783, 915
BlsI GCNGC 5 cut(s) 43, 46, 49, 784, 916
Bme1390I CCNGG 2 cut(s) 518, 576
BmiI GGNNCC 4 cut(s) 7, 442, 853, 891
BmrFI CCNGG 2 cut(s) 518, 576
BmsI GCATC 3 cut(s) 293, 493, 867
BpmI CTGGAG 1 cut(s) 190
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 4 cut(s) 126, 516, 517, 549
BsaWI WCCGGW 1 cut(s) 680
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 509
BseBI CCWGG 2 cut(s) 518, 576
BseDI CCNNGG 4 cut(s) 126, 516, 517, 549
BseGI GGATG 2 cut(s) 689, 882
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 509
BseRI GAGGAG 3 cut(s) 112, 115, 653
BseXI GCAGC 2 cut(s) 794, 926
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 1 cut(s) 329
BshNI GGYRCC 2 cut(s) 440, 889
BsiSI CCGG 1 cut(s) 681
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 2 cut(s) 208, 397
BsmBI CGTCTC 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 1 cut(s) 329
Bsp143I GATC 1 cut(s) 727
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 6 cut(s) 42, 45, 48, 294, 771, 794
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 4 cut(s) 7, 442, 853, 891
BspMAI CTGCAG 1 cut(s) 904
BspMI ACCTGC 2 cut(s) 663, 907
BspPI GGATC 1 cut(s) 722
BspQI GCTCTTC 1 cut(s) 303
BspT107I GGYRCC 2 cut(s) 440, 889
BspTI CTTAAG 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 509
BssECI CCNNGG 4 cut(s) 126, 516, 517, 549
BssMI GATC 1 cut(s) 727
BssNAI GTATAC 1 cut(s) 510
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 549
Bst1107I GTATAC 1 cut(s) 510
Bst2UI CCWGG 2 cut(s) 518, 576
Bst6I CTCTTC 2 cut(s) 303, 630
BstACI GRCGYC 1 cut(s) 390
BstAFI CTTAAG 1 cut(s) 302
BstAPI GCANNNNNTGC 1 cut(s) 779
BstC8I GCNNGC 1 cut(s) 798
BstDEI CTNAG 2 cut(s) 414, 909
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 2 cut(s) 689, 882
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 1 cut(s) 730
BstMAI GTCTC 2 cut(s) 208, 397
BstMBI GATC 1 cut(s) 727
BstMWI GCNNNNNNNGC 3 cut(s) 47, 326, 779
BstNI CCWGG 2 cut(s) 518, 576
BstSCI CCNGG 2 cut(s) 516, 574
BstSFI CTRYAG 2 cut(s) 813, 900
BstV1I GCAGC 2 cut(s) 794, 926
BstXI CCANNNNNNTGG 1 cut(s) 578
BstZ17I GTATAC 1 cut(s) 510
BsuRI GGCC 1 cut(s) 329
BtgI CCRYGG 1 cut(s) 549
BtsCI GGATG 2 cut(s) 689, 882
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
BveI ACCTGC 2 cut(s) 663, 907
Cac8I GCNNGC 1 cut(s) 798
CaiI CAGNNNCTG 1 cut(s) 788
CfoI GCGC 1 cut(s) 337
CseI GACGC 1 cut(s) 869
Csp6I GTAC 1 cut(s) 218
CviAII CATG 2 cut(s) 359, 550
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 2 cut(s) 414, 909
DpnI GATC 1 cut(s) 729
DpnII GATC 1 cut(s) 727
DrdI GACNNNNNNGTC 1 cut(s) 608
DseDI GACNNNNNNGTC 1 cut(s) 608
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 303, 630
EarI CTCTTC 2 cut(s) 303, 630
Eco130I CCWWGG 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 210
EcoRII CCWGG 2 cut(s) 516, 574
EcoT14I CCWWGG 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 549
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 2 cut(s) 362, 553
FaqI GGGAC 1 cut(s) 368
FatI CATG 2 cut(s) 358, 549
FauI CCCGC 2 cut(s) 301, 801
FauNDI CATATG 1 cut(s) 401
FblI GTMKAC 1 cut(s) 509
Fnu4HI GCNGC 5 cut(s) 42, 45, 48, 783, 915
FokI GGATG 2 cut(s) 696, 889
Fsp4HI GCNGC 5 cut(s) 42, 45, 48, 783, 915
FspBI CTAG 2 cut(s) 864, 881
GlaI GCGC 1 cut(s) 336
GluI GCNGC 5 cut(s) 42, 45, 48, 783, 915
GsuI CTGGAG 1 cut(s) 190
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 681
HgaI GACGC 1 cut(s) 869
HhaI GCGC 1 cut(s) 337
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 2 cut(s) 362, 553
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HincII GTYRAC 1 cut(s) 690
HindII GTYRAC 1 cut(s) 690
HinfI GANTC 6 cut(s) 18, 119, 748, 767, 869, 958
HpaI GTTAAC 1 cut(s) 690
HpaII CCGG 1 cut(s) 681
Hpy166II GTNNAC 2 cut(s) 510, 690
Hpy188I TCNGA 5 cut(s) 76, 130, 166, 448, 825
Hpy188III TCNNGA 5 cut(s) 15, 207, 428, 490, 718
Hpy8I GTNNAC 2 cut(s) 510, 690
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 32, 741
HpyCH4IV ACGT 2 cut(s) 390, 692
HpyCH4V TGCA 7 cut(s) 261, 284, 320, 461, 478, 782, 902
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 326, 779
HpyF3I CTNAG 2 cut(s) 414, 909
HpySE526I ACGT 2 cut(s) 390, 692
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 2 cut(s) 362, 553
HspAI GCGC 1 cut(s) 335
KspAI GTTAAC 1 cut(s) 690
Kzo9I GATC 1 cut(s) 727
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 640
Lsp1109I GCAGC 2 cut(s) 794, 926
LweI GCATC 3 cut(s) 293, 493, 867
MaeI CTAG 2 cut(s) 864, 881
MaeII ACGT 2 cut(s) 390, 692
MaeIII GTNAC 1 cut(s) 904
MalI GATC 1 cut(s) 729
MbiI CCGCTC 1 cut(s) 296
MboI GATC 1 cut(s) 727
MboII GAAGA 5 cut(s) 63, 279, 290, 647, 953
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 5 cut(s) 210, 243, 250, 262, 421
MluNI TGGCCA 1 cut(s) 329
MlyI GAGTC 2 cut(s) 113, 878
MmeI TCCRAC 4 cut(s) 99, 132, 138, 687
Mox20I TGGCCA 1 cut(s) 329
MscI TGGCCA 1 cut(s) 329
MseI TTAA 3 cut(s) 234, 303, 689
Msp20I TGGCCA 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 302
MspI CCGG 1 cut(s) 681
MspR9I CCNGG 2 cut(s) 518, 576
MvaI CCWGG 2 cut(s) 518, 576
MwoI GCNNNNNNNGC 3 cut(s) 47, 326, 779
NcoI CCATGG 1 cut(s) 549
NdeI CATATG 1 cut(s) 401
NdeII GATC 1 cut(s) 727
NlaIII CATG 2 cut(s) 362, 553
NlaIV GGNNCC 4 cut(s) 7, 442, 853, 891
PasI CCCWGGG 1 cut(s) 517
PciSI GCTCTTC 1 cut(s) 303
PfeI GAWTC 4 cut(s) 18, 748, 767, 958
PkrI GCNGC 5 cut(s) 43, 46, 49, 784, 916
PleI GAGTC 2 cut(s) 113, 877
PpsI GAGTC 2 cut(s) 113, 877
Psp6I CCWGG 2 cut(s) 516, 574
PspGI CCWGG 2 cut(s) 516, 574
PspN4I GGNNCC 4 cut(s) 7, 442, 853, 891
PstI CTGCAG 1 cut(s) 904
PstNI CAGNNNCTG 1 cut(s) 788
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 3 cut(s) 234, 303, 689
SatI GCNGC 5 cut(s) 42, 45, 48, 783, 915
Sau3AI GATC 1 cut(s) 727
SchI GAGTC 2 cut(s) 113, 878
ScrFI CCNGG 2 cut(s) 518, 576
SfaNI GCATC 3 cut(s) 293, 493, 867
SfcI CTRYAG 2 cut(s) 813, 900
SmlI CTYRAG 2 cut(s) 302, 488
SmoI CTYRAG 2 cut(s) 302, 488
Sse9I AATT 5 cut(s) 210, 243, 250, 262, 421
SsiI CCGC 6 cut(s) 42, 45, 48, 294, 771, 794
SspMI CTAG 2 cut(s) 864, 881
StyD4I CCNGG 2 cut(s) 516, 574
StyI CCWWGG 1 cut(s) 549
TaiI ACGT 2 cut(s) 393, 695
TaqI TCGA 1 cut(s) 588
TasI AATT 5 cut(s) 210, 243, 250, 262, 421
TauI GCSGC 3 cut(s) 44, 47, 50
TfiI GAWTC 4 cut(s) 18, 748, 767, 958
Tru1I TTAA 3 cut(s) 234, 303, 689
Tru9I TTAA 3 cut(s) 234, 303, 689
TscAI CASTG 1 cut(s) 263
TseI GCWGC 2 cut(s) 782, 914
TspDTI ATGAA 2 cut(s) 444, 653
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 1 cut(s) 263
Vha464I CTTAAG 1 cut(s) 302
XapI RAATTY 2 cut(s) 210, 421
XmiI GTMKAC 1 cut(s) 509
XspI CTAG 2 cut(s) 864, 881
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.