Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002622

Physical Location & Seq

Genomic Coordinates Forward (+)

32579428 .. 32581860

Gene Structure 2433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G349300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCTTCCTTGTCTGGGATCGTTCAACGACCTTTGGTTGCGGCTGCTGCTCTTGCTGTAGCTTCAGTTTCTACTGACATCTCTGATAAATTGCCATCTCACAGATCCACTGACGTTTGTTCTACCTCGGATTTATCACATTCTTCATTGCATAACACCTTTCAAGATTCAAAGTTATCCTGGGTTTCTCACATTTCGGTTTCTAAGCTTGCAGACTTGTCCTTTATCTCTAGAATTCGAGTACCTGTGCCCAATATTAACTTCCCGACTCCCAATTCGGGCGGCAAATTTGTTCCCAAGTTGCTATACTCTTCGGTTGCATCTTCACCTGTTCTTCTTAATTTGTATCAGTCTGCAGACTTGGTTAAAACAACAAACCCAACTACATATAAGCATGATATATCCACTTCCCCCTCTGAAGTCACGTACAGATGGCATTTACCTGAGCCAAATGCCATAGATGTTTCCGGTACTTCTGGTTGCTCCTCGGCCAAGTTCAGGACTGTGGTGGTTTTACTAGGATGGTTGGGAGCAAAGCAAAAACATCTCAAGAAGTATGCCGAGTGGTATACCTCAAGGGGTTTTCATGTAATTACCTTTACTTTGCCGATGTCTGAGATTCTCAAATACCAACCTGGTGGGAAAGTTGAAGAGCACATCAACTCGCTTGTGAGACATTTGGCTGATTGGTTAGAGGGGGAGCATGGAAAGAATCTGGTTTTTCATACTTTTAGCAATACTGGATGGTTAACGTATGGGGTAATGTTGGAGCAGTTCCAGAAGCATGATCCTTCTCTAATGGGCAGGATTCGGGGTTGCGTTGTGGATTCTGCACCTGTTGCAGCACCTGACCCACAGGTTTGGGCTTCTGGTTTCTCAGCAGCCTTTCTGAAAAAGCATAGTGTAGCAGCAAAAGGAACCGTAGACTCAAATGAGTCAGGGATGGATGCTTTGGTTGGCACCAAGGGAGTAGTGGCACCCAAACCTGCAGCAACTGAAGCAGCTTTGCTAGTAGTTTTGGAGAAGTTCTTTGAAGTGATTTTGAATCTTCCTACAGTGAACAGGAGGCTTTCTGATCTCGTGGGGTTATTGTCAGCCCGACAACCAAGCTGTCCGCAATTGTATATATACAGCTCTGCAGACAGGGTGATTCCTGCAGGGTCGGTGGAATCATTCATAAAGCAGCAACGGAGGGCTGGACATGAGGTTAGGGCTTGCAACTTTGTGTCCACACCTCATGTTGATCATTTCAGAAACGACCCGAAACTGTACACTTCTGAGCTAACCCAGTTTCTGGAGGACTGTGTGCTTACTTGTTGCAAAGAGTCTCATTTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

447

Amino Acids

48.76

Weight (kDa)

8.66

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19970 AT3G19970 AT3G19970 AT3G19970 AT3G19970
fragaria_vesca	FvH4_4g37150 FvH4_7g21480
malus_domestica	MD13G1003100.v1.1
prunus_persica	Prupe.1G349300_v2.0.a1
pyrus_communis	pycom13g00260 pycom16g00170
rosa_chinensis	RchiOBHm_Chr1g0365791 RchiOBHm_Chr4g0409441 RchiOBHm_Chr4g0446951
rosa_laevigata	RLG00000005618 RLG00000027396
rosa_multiflora	Rmu_co8345695.1_g000001 Rmu_sc0001753.1_g000006 Rmu_sc0002365.1_g000009 Rmu_sc0004311.1_g000013 Rmu_sc0011539.1_g000002 Rmu_sc0034955.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290870 Rroxscaffold_5G00387280
rosa_rugosa	Rorug01G0324300 Rorug03G0341000 Rorug03G0341000 Rorug04G0376500
rosa_samantha	Rh1AG333200 Rh1BG294100 Rh1CG310800 Rh1DG326500 Rh4AG437900 Rh4BG446800 Rh4CG464100 Rh4DG445600
rosa_wichuraiana	Rw0G014000 Rw1G006220 Rw1G029570 Rw4G037450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	994
AccB1I	GGYRCC	2 cut(s)	959, 976
AccB7I	CCANNNNNTGG	1 cut(s)	1294
AccI	GTMKAC	2 cut(s)	569, 924
AciI	CCGC	3 cut(s)	41, 282, 1115
AclWI	GGATC	3 cut(s)	26, 99, 782
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	2 cut(s)	234, 287
AcuI	CTGAAG	3 cut(s)	48, 438, 1017
AfaI	GTAC	4 cut(s)	243, 428, 472, 1271
AfiI	CCNNNNNNNGG	4 cut(s)	15, 278, 498, 1294
AgsI	TTSAA	6 cut(s)	26, 164, 171, 650, 1034, 1045
AjnI	CCWGG	2 cut(s)	179, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	6 cut(s)	62, 208, 1004, 1110, 1134, 1282
AluI	AGCT	6 cut(s)	62, 208, 1004, 1110, 1134, 1282
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	2 cut(s)	667, 1332
AlwI	GGATC	3 cut(s)	26, 99, 782
AlwNI	CAGNNNCTG	3 cut(s)	848, 995, 1294
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	8 cut(s)	44, 47, 842, 881, 908, 989, 1001, 1183
ApoI	RAATTY	2 cut(s)	234, 287
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AsuHPI	GGTGA	2 cut(s)	318, 1159
BaeGI	GKGCMC	1 cut(s)	252
BanI	GGYRCC	2 cut(s)	959, 976
BauI	CACGAG	1 cut(s)	1079
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	8 cut(s)	31, 34, 854, 893, 920, 1001, 1013, 1195
BccI	CCATC	5 cut(s)	103, 426, 516, 738, 937
BciT130I	CCWGG	2 cut(s)	181, 636
BclI	TGATCA	1 cut(s)	1243
BcoDI	GTCTC	2 cut(s)	667, 1332
BfaI	CTAG	3 cut(s)	231, 518, 1010
BfmI	CTRYAG	6 cut(s)	57, 354, 987, 1053, 1137, 1155
BfuAI	ACCTGC	1 cut(s)	994
Bme1390I	CCNGG	2 cut(s)	181, 636
BmiI	GGNNCC	3 cut(s)	919, 961, 978
BmrFI	CCNGG	2 cut(s)	181, 636
BmrI	ACTGGG	1 cut(s)	1282
BmsI	GCATC	2 cut(s)	329, 937
BmuI	ACTGGG	1 cut(s)	1282
BpmI	CTGGAG	1 cut(s)	1316
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	2 cut(s)	533, 559
BsaAI	YACGTR	1 cut(s)	426
BsaJI	CCNNGG	4 cut(s)	126, 180, 486, 963
BsaWI	WCCGGW	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 278, 498, 1294
Bse1I	ACTGG	2 cut(s)	745, 1288
Bse3DI	GCAATG	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	181, 636
BseDI	CCNNGG	4 cut(s)	126, 180, 486, 963
BseGI	GGATG	4 cut(s)	527, 749, 948, 952
BseLI	CCNNNNNNNGG	4 cut(s)	15, 278, 498, 1294
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	4 cut(s)	435, 606, 891, 1269
BseNI	ACTGG	2 cut(s)	745, 1288
BseRI	GAGGAG	1 cut(s)	475
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	8 cut(s)	31, 34, 854, 893, 920, 1001, 1013, 1195
BsgI	GTGCAG	1 cut(s)	816
BshFI	GGCC	1 cut(s)	491
BshNI	GGYRCC	2 cut(s)	959, 976
BsiHKAI	GWGCWC	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	4 cut(s)	15, 278, 498, 1294
BsmAI	GTCTC	2 cut(s)	667, 1332
BsnI	GGCC	1 cut(s)	491
Bsp1286I	GDGCHC	2 cut(s)	252, 657
Bsp1407I	TGTACA	1 cut(s)	1269
Bsp143I	GATC	5 cut(s)	18, 104, 787, 1075, 1243
BspACI	CCGC	3 cut(s)	41, 282, 1115
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	4 cut(s)	436, 607, 890, 1270
BspLI	GGNNCC	3 cut(s)	919, 961, 978
BspMAI	CTGCAG	4 cut(s)	358, 991, 1141, 1159
BspMI	ACCTGC	1 cut(s)	994
BspPI	GGATC	3 cut(s)	26, 99, 782
BspQI	GCTCTTC	1 cut(s)	645
BspT107I	GGYRCC	2 cut(s)	959, 976
BsrDI	GCAATG	1 cut(s)	146
BsrGI	TGTACA	1 cut(s)	1269
BsrI	ACTGG	2 cut(s)	745, 1288
BssECI	CCNNGG	4 cut(s)	126, 180, 486, 963
BssMI	GATC	5 cut(s)	18, 104, 787, 1075, 1243
BssNAI	GTATAC	1 cut(s)	570
BssSI	CACGAG	1 cut(s)	1079
BssT1I	CCWWGG	1 cut(s)	963
Bst1107I	GTATAC	1 cut(s)	570
Bst2BI	CACGAG	1 cut(s)	1079
Bst2UI	CCWGG	2 cut(s)	181, 636
Bst4CI	ACNGT	5 cut(s)	505, 922, 1057, 1269, 1304
Bst6I	CTCTTC	2 cut(s)	316, 645
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstAUI	TGTACA	1 cut(s)	1269
BstBAI	YACGTR	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	210, 1216
BstDEI	CTNAG	5 cut(s)	204, 444, 615, 877, 1278
BstF5I	GGATG	4 cut(s)	527, 749, 948, 952
BstKTI	GATC	5 cut(s)	21, 107, 790, 1078, 1246
BstMAI	GTCTC	2 cut(s)	667, 1332
BstMBI	GATC	5 cut(s)	18, 104, 787, 1075, 1243
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 53, 839, 998
BstNI	CCWGG	2 cut(s)	181, 636
BstSCI	CCNGG	2 cut(s)	179, 634
BstSFI	CTRYAG	6 cut(s)	57, 354, 987, 1053, 1137, 1155
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	8 cut(s)	31, 34, 854, 893, 920, 1001, 1013, 1195
BstX2I	RGATCY	1 cut(s)	104
BstXI	CCANNNNNNTGG	2 cut(s)	638, 861
BstYI	RGATCY	1 cut(s)	104
BstZ17I	GTATAC	1 cut(s)	570
BsuRI	GGCC	1 cut(s)	491
BtsCI	GGATG	4 cut(s)	527, 749, 948, 952
BtsIMutI	CAGTG	2 cut(s)	108, 1062
BveI	ACCTGC	1 cut(s)	994
Cac8I	GCNNGC	2 cut(s)	210, 1216
CaiI	CAGNNNCTG	3 cut(s)	848, 995, 1294
CsiI	ACCWGGT	1 cut(s)	634
Csp6I	GTAC	4 cut(s)	242, 427, 471, 1270
CviAII	CATG	6 cut(s)	395, 587, 704, 785, 1202, 1238
CviQI	GTAC	4 cut(s)	242, 427, 471, 1270
DdeI	CTNAG	5 cut(s)	204, 444, 615, 877, 1278
DpnI	GATC	5 cut(s)	20, 106, 789, 1077, 1245
DpnII	GATC	5 cut(s)	18, 104, 787, 1075, 1243
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	2 cut(s)	316, 645
EarI	CTCTTC	2 cut(s)	316, 645
Eco130I	CCWWGG	1 cut(s)	963
Eco57I	CTGAAG	3 cut(s)	48, 438, 1017
EcoRI	GAATTC	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	179, 634
EcoT14I	CCWWGG	1 cut(s)	963
ErhI	CCWWGG	1 cut(s)	963
FaeI	CATG	6 cut(s)	398, 590, 707, 788, 1205, 1241
FatI	CATG	6 cut(s)	394, 586, 703, 784, 1201, 1237
FbaI	TGATCA	1 cut(s)	1243
FblI	GTMKAC	2 cut(s)	569, 924
FokI	GGATG	4 cut(s)	534, 756, 955, 959
FspBI	CTAG	3 cut(s)	231, 518, 1010
GsuI	CTGGAG	1 cut(s)	1316
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	1 cut(s)	468
Hin1II	CATG	6 cut(s)	398, 590, 707, 788, 1205, 1241
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HindIII	AAGCTT	1 cut(s)	206
HpaI	GTTAAC	1 cut(s)	750
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	2 cut(s)	318, 1159
Hpy166II	GTNNAC	6 cut(s)	570, 750, 925, 1060, 1230, 1272
Hpy188I	TCNGA	8 cut(s)	85, 130, 418, 616, 891, 1075, 1253, 1279
Hpy188III	TCNNGA	7 cut(s)	164, 231, 265, 499, 550, 778, 1295
Hpy8I	GTNNAC	6 cut(s)	570, 750, 925, 1060, 1230, 1272
HpyAV	CCTTC	1 cut(s)	801
HpyCH4III	ACNGT	5 cut(s)	505, 922, 1057, 1269, 1304
HpyCH4IV	ACGT	3 cut(s)	114, 425, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 53, 839, 998
HpyF3I	CTNAG	5 cut(s)	204, 444, 615, 877, 1278
HpySE526I	ACGT	3 cut(s)	114, 425, 752
Hsp92II	CATG	6 cut(s)	398, 590, 707, 788, 1205, 1241
Ksp22I	TGATCA	1 cut(s)	1243
KspAI	GTTAAC	1 cut(s)	750
Kzo9I	GATC	5 cut(s)	18, 104, 787, 1075, 1243
LguI	GCTCTTC	1 cut(s)	645
LmnI	GCTCC	4 cut(s)	488, 530, 700, 769
Lsp1109I	GCAGC	8 cut(s)	31, 34, 854, 893, 920, 1001, 1013, 1195
LweI	GCATC	2 cut(s)	329, 937
MabI	ACCWGGT	1 cut(s)	634
MaeI	CTAG	3 cut(s)	231, 518, 1010
MaeII	ACGT	3 cut(s)	114, 425, 752
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	5 cut(s)	20, 106, 789, 1077, 1245
MboI	GATC	5 cut(s)	18, 104, 787, 1075, 1243
MboII	GAAGA	6 cut(s)	135, 303, 315, 326, 662, 1040
MfeI	CAATTG	1 cut(s)	1118
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	2 cut(s)	252, 657
MluCI	AATT	7 cut(s)	89, 234, 274, 287, 340, 591, 1118
MlyI	GAGTC	4 cut(s)	262, 920, 944, 1334
MmeI	TCCRAC	1 cut(s)	747
MseI	TTAA	5 cut(s)	258, 339, 366, 749, 1339
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	2 cut(s)	181, 636
MunI	CAATTG	1 cut(s)	1118
MvaI	CCWGG	2 cut(s)	181, 636
MwoI	GCNNNNNNNGC	4 cut(s)	47, 53, 839, 998
NdeII	GATC	5 cut(s)	18, 104, 787, 1075, 1243
NlaIII	CATG	6 cut(s)	398, 590, 707, 788, 1205, 1241
NlaIV	GGNNCC	3 cut(s)	919, 961, 978
NmeAIII	GCCGAG	2 cut(s)	467, 586
NmuCI	GTSAC	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	645
PfeI	GAWTC	8 cut(s)	167, 619, 712, 808, 827, 1045, 1150, 1169
PflMI	CCANNNNNTGG	1 cut(s)	1294
PleI	GAGTC	4 cut(s)	262, 920, 943, 1333
PpsI	GAGTC	4 cut(s)	262, 920, 943, 1333
Ppu21I	YACGTR	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	179, 634
PspGI	CCWGG	2 cut(s)	179, 634
PspN4I	GGNNCC	3 cut(s)	919, 961, 978
PstI	CTGCAG	4 cut(s)	358, 991, 1141, 1159
PstNI	CAGNNNCTG	3 cut(s)	848, 995, 1294
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	4 cut(s)	243, 428, 472, 1271
RsaNI	GTAC	4 cut(s)	242, 427, 471, 1270
SapI	GCTCTTC	1 cut(s)	645
SaqAI	TTAA	5 cut(s)	258, 339, 366, 749, 1339
Sau3AI	GATC	5 cut(s)	18, 104, 787, 1075, 1243
SbfI	CCTGCAGG	1 cut(s)	1159
SchI	GAGTC	4 cut(s)	262, 920, 944, 1334
ScrFI	CCNGG	2 cut(s)	181, 636
SdaI	CCTGCAGG	1 cut(s)	1159
SduI	GDGCHC	2 cut(s)	252, 657
SexAI	ACCWGGT	1 cut(s)	634
SfaNI	GCATC	2 cut(s)	329, 937
SfcI	CTRYAG	6 cut(s)	57, 354, 987, 1053, 1137, 1155
SmlI	CTYRAG	2 cut(s)	548, 574
SmoI	CTYRAG	2 cut(s)	548, 574
Sse8387I	CCTGCAGG	1 cut(s)	1159
Sse9I	AATT	7 cut(s)	89, 234, 274, 287, 340, 591, 1118
SsiI	CCGC	3 cut(s)	41, 282, 1115
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	3 cut(s)	231, 518, 1010
StyD4I	CCNGG	2 cut(s)	179, 634
StyI	CCWWGG	1 cut(s)	963
TaaI	ACNGT	5 cut(s)	505, 922, 1057, 1269, 1304
TaiI	ACGT	3 cut(s)	117, 428, 755
TaqI	TCGA	1 cut(s)	238
TasI	AATT	7 cut(s)	89, 234, 274, 287, 340, 591, 1118
TatI	WGTACW	1 cut(s)	1269
TauI	GCSGC	2 cut(s)	44, 285
TfiI	GAWTC	8 cut(s)	167, 619, 712, 808, 827, 1045, 1150, 1169
Tru1I	TTAA	5 cut(s)	258, 339, 366, 749, 1339
Tru9I	TTAA	5 cut(s)	258, 339, 366, 749, 1339
TscAI	CASTG	2 cut(s)	115, 1062
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	8 cut(s)	44, 47, 842, 881, 908, 989, 1001, 1183
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	4 cut(s)	135, 575, 713, 1165
TspGWI	ACGGA	1 cut(s)	1204
TspRI	CASTG	2 cut(s)	115, 1062
Van91I	CCANNNNNTGG	1 cut(s)	1294
XapI	RAATTY	2 cut(s)	234, 287
XbaI	TCTAGA	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	970
XmiI	GTMKAC	2 cut(s)	569, 924
XspI	CTAG	3 cut(s)	231, 518, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.