Rmu_sc0001753.1_g000005

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001753.1
OG0015952
Physical Location & Seq
Reverse (-)
27271 .. 28715
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001753.1_g000005.1.cds

Sequence Viewer

Length: 1227 bp
atgggcggaagcatcaacgaggcattgagagatgacgagcttcgatcggtgctggcgaagctggagagtcagcgggacaaggaggtgttcgggttggtgtgcaagaggtggcttcacttgcagagcactgagaggaggaggctgtccgcacgtgcggggcctcacatgctccgcaaaatggctgccaggttctcccgccttcatgagctcgacctctcccagtccctttccaggtccttctatccaggtgtcaccgactctgatctctccgtcattgccaatggcttcaactgcttgaggatcctcactctccaaaactgtaaaggagttacggatgctggaatcattgcaattggatctggtctttcatcactacagtctctagatgtatcctattgcagaaagttaacagacaaaggattatcagctgttgctcagggctgctctgaccttcgcgcactgcatcttaccggctgcagatttataaccgatgcactattacatgctctttcaagcaattgtcactctttacaacacttggctctccaaggctgtactaatatctctgattctggacttagtgaccttgtaaatggatgtcaacagatcgagtttttagacatcaacaaatgcagcaacattggagacattggcgtttccagtgtctccaaggcatgttcatcttctctcaagacactcaagctattggactgttacaaagtcggggatgagtctataatatccttggccacattctgcaaaaatcttgaaactttaatcattggtggctgccgggacatatctgacgcatcaataaatttgctggcctcttcttcttgtaagggtagtctcaagaacttacggatggattggtgtttgaatatcacagactcttccttgagctgcattctggttcagtgcagaaacctcgaggctcttgacattgggtgctgcgaggaggtgtcagatgctgccttccagggtttaaaaggtggtgaagttgagctgaccctgaccttaaaggtcttaaaggttagtaactgcccgaaaatcagtgtggcagggatagctatggtgttggagaaatgcgagatgctaaaatacttagatgtaaggtcatgcccacaaattacaaaggggggctgtgatgaggccggattgcagtttcctcaatcttgtaaagtcaacttcaccgggagtttaggggagcctgatgtcttactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

408

Amino Acids

43.96

Weight (kDa)

6.64

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23340
fragaria_vesca FvH4_4g37160
prunus_persica Prupe.1G349400_v2.0.a1
pyrus_communis pycom13g00250
rosa_chinensis RchiOBHm_Chr4g0446961
rosa_laevigata RLG00000005617
rosa_multiflora Rmu_sc0001753.1_g000005 Rmu_sc0011539.1_g000001
rosa_roxburghii Rroxscaffold_5G00387290
rosa_rugosa Rorug04G0376500
rosa_samantha Rh4AG438000 Rh4BG446900 Rh4CG464200 Rh4DG445700
rosa_wichuraiana Rw4G037460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AbsI CCTCGAGG 1 cut(s) 929
AccII CGCG 1 cut(s) 456
AciI CCGC 6 cut(s) 6, 73, 147, 155, 172, 196
AclWI GGATC 3 cut(s) 295, 308, 364
AcoI YGGCCR 1 cut(s) 747
AcsI RAATTY 1 cut(s) 817
AcvI CACGTG 1 cut(s) 152
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 2 cut(s) 178, 231
AgsI TTSAA 4 cut(s) 289, 513, 770, 880
AjnI CCWGG 4 cut(s) 185, 230, 244, 978
AluBI AGCT 8 cut(s) 40, 61, 208, 428, 703, 903, 1006, 1070
AluI AGCT 8 cut(s) 40, 61, 208, 428, 703, 903, 1006, 1070
Alw21I GWGCWC 2 cut(s) 128, 210
Alw26I GTCTC 4 cut(s) 384, 639, 670, 854
AlwI GGATC 3 cut(s) 295, 308, 364
AlwNI CAGNNNCTG 1 cut(s) 971
Ama87I CYCGRG 1 cut(s) 929
AoxI GGCC 4 cut(s) 158, 747, 825, 1152
ApeKI GCWGC 8 cut(s) 182, 441, 474, 633, 789, 903, 951, 971
ApoI RAATTY 1 cut(s) 817
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 2 cut(s) 158, 234
AsuC2I CCSGG 2 cut(s) 794, 1195
AsuHPI GGTGA 3 cut(s) 244, 1007, 1183
AvaI CYCGRG 1 cut(s) 929
AvaII GGWCC 1 cut(s) 234
BalI TGGCCA 1 cut(s) 749
BamHI GGATCC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 128, 210
BbvI GCAGC 8 cut(s) 169, 428, 461, 645, 776, 890, 938, 958
BccI CCATC 1 cut(s) 859
BcgI CGANNNNNNTGC 2 cut(s) 910, 944
BciT130I CCWGG 4 cut(s) 187, 232, 246, 980
BciVI GTATCC 1 cut(s) 400
BcnI CCSGG 2 cut(s) 794, 1195
BcoDI GTCTC 4 cut(s) 384, 639, 670, 854
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 2 cut(s) 374, 475
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 904, 952, 972
BlsI GCNGC 8 cut(s) 184, 443, 476, 635, 791, 905, 953, 973
Bme1390I CCNGG 6 cut(s) 187, 232, 246, 794, 980, 1195
Bme18I GGWCC 1 cut(s) 234
BmeT110I CYCGRG 1 cut(s) 929
BmgT120I GGNCC 2 cut(s) 158, 234
BmiI GGNNCC 3 cut(s) 159, 302, 1209
BmrFI CCNGG 6 cut(s) 187, 232, 246, 794, 980, 1195
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 7 cut(s) 21, 325, 472, 481, 818, 958, 1083
BmuI ACTGGG 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 5 cut(s) 316, 674, 683, 836, 919
BpuMI CCSGG 2 cut(s) 794, 1195
BsaAI YACGTR 1 cut(s) 152
BsaJI CCNNGG 4 cut(s) 547, 669, 744, 979
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 231
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 2 cut(s) 220, 660
Bse3DI GCAATG 2 cut(s) 273, 345
BseBI CCWGG 4 cut(s) 187, 232, 246, 980
BseDI CCNNGG 4 cut(s) 547, 669, 744, 979
BseGI GGATG 4 cut(s) 340, 602, 733, 870
BseLI CCNNNNNNNGG 2 cut(s) 178, 231
BseMI GCAATG 2 cut(s) 273, 345
BseMII CTCAG 2 cut(s) 120, 449
BseNI ACTGG 2 cut(s) 220, 660
BseRI GAGGAG 3 cut(s) 148, 151, 971
BseXI GCAGC 8 cut(s) 169, 428, 461, 645, 776, 890, 938, 958
BsgI GTGCAG 1 cut(s) 940
Bsh1236I CGCG 1 cut(s) 456
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 4 cut(s) 160, 749, 827, 1154
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 2 cut(s) 128, 210
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 4 cut(s) 471, 793, 1155, 1194
BslFI GGGAC 3 cut(s) 89, 208, 809
BslI CCNNNNNNNGG 2 cut(s) 178, 231
BsmAI GTCTC 4 cut(s) 384, 639, 670, 854
BsmFI GGGAC 3 cut(s) 89, 208, 809
BsmI GAATGC 1 cut(s) 906
BsnI GGCC 4 cut(s) 160, 749, 827, 1154
BsoBI CYCGRG 1 cut(s) 929
Bsp1286I GDGCHC 2 cut(s) 128, 210
Bsp143I GATC 5 cut(s) 44, 262, 300, 356, 606
BspACI CCGC 6 cut(s) 6, 73, 147, 155, 172, 196
BspANI GGCC 4 cut(s) 160, 749, 827, 1154
BspCNI CTCAG 2 cut(s) 121, 448
BspFNI CGCG 1 cut(s) 456
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 3 cut(s) 159, 302, 1209
BspMAI CTGCAG 1 cut(s) 479
BspPI GGATC 3 cut(s) 295, 308, 364
BsrDI GCAATG 2 cut(s) 273, 345
BsrFI RCCGGY 1 cut(s) 470
BsrI ACTGG 2 cut(s) 220, 660
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 4 cut(s) 547, 669, 744, 979
BssMI GATC 5 cut(s) 44, 262, 300, 356, 606
BssT1I CCWWGG 3 cut(s) 547, 669, 744
Bst2UI CCWGG 4 cut(s) 187, 232, 246, 980
Bst4CI ACNGT 3 cut(s) 320, 378, 713
Bst6I CTCTTC 2 cut(s) 835, 898
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 54, 825
BstDEI CTNAG 4 cut(s) 129, 435, 578, 1105
BstF5I GGATG 4 cut(s) 340, 602, 733, 870
BstFNI CGCG 1 cut(s) 456
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 5 cut(s) 47, 265, 303, 359, 609
BstMAI GTCTC 4 cut(s) 384, 639, 670, 854
BstMBI GATC 5 cut(s) 44, 262, 300, 356, 606
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 5 cut(s) 58, 118, 166, 291, 1067
BstNI CCWGG 4 cut(s) 187, 232, 246, 980
BstNSI RCATGY 3 cut(s) 169, 506, 678
BstSCI CCNGG 6 cut(s) 185, 230, 244, 792, 978, 1193
BstSFI CTRYAG 2 cut(s) 374, 475
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 8 cut(s) 169, 428, 461, 645, 776, 890, 938, 958
BstX2I RGATCY 2 cut(s) 300, 356
BstYI RGATCY 2 cut(s) 300, 356
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 4 cut(s) 160, 749, 827, 1154
BtsCI GGATG 4 cut(s) 340, 602, 733, 870
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 5 cut(s) 126, 458, 667, 923, 1060
Cac8I GCNNGC 2 cut(s) 54, 825
CaiI CAGNNNCTG 1 cut(s) 971
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 2 cut(s) 158, 234
CseI GACGC 1 cut(s) 815
Csp6I GTAC 1 cut(s) 555
CviAII CATG 5 cut(s) 166, 203, 503, 675, 1119
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 4 cut(s) 129, 435, 578, 1105
DpnI GATC 5 cut(s) 46, 264, 302, 358, 608
DpnII GATC 5 cut(s) 44, 262, 300, 356, 606
DraI TTTAAA 1 cut(s) 987
EaeI YGGCCR 1 cut(s) 747
Eam1104I CTCTTC 2 cut(s) 835, 898
EarI CTCTTC 2 cut(s) 835, 898
EciI GGCGGA 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 3 cut(s) 547, 669, 744
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 208
Eco72I CACGTG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 929
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 2 cut(s) 158, 234
EcoRII CCWGG 4 cut(s) 185, 230, 244, 978
EcoT14I CCWWGG 3 cut(s) 547, 669, 744
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 3 cut(s) 547, 669, 744
FaeI CATG 5 cut(s) 169, 206, 506, 678, 1122
FaiI YATR 9 cut(s) 167, 204, 485, 504, 676, 737, 800, 1073, 1120
FaqI GGGAC 3 cut(s) 89, 208, 809
FatI CATG 5 cut(s) 165, 202, 502, 674, 1118
FauI CCCGC 3 cut(s) 66, 148, 203
Fnu4HI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 904, 952, 972
FokI GGATG 4 cut(s) 347, 609, 740, 877
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 904, 952, 972
FspBI CTAG 1 cut(s) 383
GlaI GCGC 1 cut(s) 457
GluI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 904, 952, 972
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 4 cut(s) 160, 749, 827, 1154
HapII CCGG 4 cut(s) 471, 793, 1155, 1194
HgaI GACGC 1 cut(s) 815
HhaI GCGC 1 cut(s) 458
Hin1II CATG 5 cut(s) 169, 206, 506, 678, 1122
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 3 cut(s) 408, 602, 1186
HindII GTYRAC 3 cut(s) 408, 602, 1186
HinfI GANTC 6 cut(s) 67, 257, 342, 569, 731, 890
HpaI GTTAAC 1 cut(s) 408
HpaII CCGG 4 cut(s) 471, 793, 1155, 1194
HphI GGTGA 3 cut(s) 244, 1007, 1183
Hpy166II GTNNAC 3 cut(s) 408, 602, 1186
Hpy188I TCNGA 5 cut(s) 262, 448, 568, 805, 967
Hpy188III TCNNGA 7 cut(s) 203, 383, 573, 691, 767, 853, 938
Hpy8I GTNNAC 3 cut(s) 408, 602, 1186
HpyAV CCTTC 4 cut(s) 209, 247, 461, 985
HpyCH4III ACNGT 3 cut(s) 320, 378, 713
HpyCH4IV ACGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 118, 166, 291, 1067
HpyF3I CTNAG 4 cut(s) 129, 435, 578, 1105
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 5 cut(s) 169, 206, 506, 678, 1122
HspAI GCGC 1 cut(s) 456
KspAI GTTAAC 1 cut(s) 408
Kzo9I GATC 5 cut(s) 44, 262, 300, 356, 606
LmnI GCTCC 2 cut(s) 174, 1207
Lsp1109I GCAGC 8 cut(s) 169, 428, 461, 645, 776, 890, 938, 958
LweI GCATC 7 cut(s) 21, 325, 472, 481, 818, 958, 1083
MaeI CTAG 1 cut(s) 383
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 6 cut(s) 250, 328, 521, 581, 713, 1037
MalI GATC 5 cut(s) 46, 264, 302, 358, 608
MboI GATC 5 cut(s) 44, 262, 300, 356, 606
MboII GAAGA 4 cut(s) 675, 822, 825, 885
MfeI CAATTG 2 cut(s) 351, 517
MflI RGATCY 2 cut(s) 300, 356
MhlI GDGCHC 2 cut(s) 128, 210
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 4 cut(s) 351, 517, 817, 1128
MluNI TGGCCA 1 cut(s) 749
MlyI GAGTC 4 cut(s) 76, 251, 740, 884
MmeI TCCRAC 1 cut(s) 1059
Mox20I TGGCCA 1 cut(s) 749
MscI TGGCCA 1 cut(s) 749
MseI TTAA 5 cut(s) 407, 776, 986, 1019, 1028
Msp20I TGGCCA 1 cut(s) 749
MspA1I CMGCKG 2 cut(s) 73, 428
MspI CCGG 4 cut(s) 471, 793, 1155, 1194
MspR9I CCNGG 6 cut(s) 187, 232, 246, 794, 980, 1195
MunI CAATTG 2 cut(s) 351, 517
Mva1269I GAATGC 1 cut(s) 906
MvaI CCWGG 4 cut(s) 187, 232, 246, 980
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 5 cut(s) 58, 118, 166, 291, 1067
NciI CCSGG 2 cut(s) 794, 1195
NdeII GATC 5 cut(s) 44, 262, 300, 356, 606
NlaIII CATG 5 cut(s) 169, 206, 506, 678, 1122
NlaIV GGNNCC 3 cut(s) 159, 302, 1209
NmuCI GTSAC 3 cut(s) 250, 521, 581
NspI RCATGY 3 cut(s) 169, 506, 678
PaeR7I CTCGAG 1 cut(s) 929
PagI TCATGA 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PctI GAATGC 1 cut(s) 906
PfeI GAWTC 2 cut(s) 342, 569
PkrI GCNGC 8 cut(s) 184, 443, 476, 635, 791, 905, 953, 973
Ple19I CGATCG 1 cut(s) 47
PleI GAGTC 4 cut(s) 75, 251, 739, 884
PmaCI CACGTG 1 cut(s) 152
PmlI CACGTG 1 cut(s) 152
PpsI GAGTC 4 cut(s) 75, 251, 739, 884
Ppu21I YACGTR 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 234
PsiI TTATAA 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 234
Psp6I CCWGG 4 cut(s) 185, 230, 244, 978
PspCI CACGTG 1 cut(s) 152
PspGI CCWGG 4 cut(s) 185, 230, 244, 978
PspN4I GGNNCC 3 cut(s) 159, 302, 1209
PspPI GGNCC 2 cut(s) 158, 234
PspPPI RGGWCCY 1 cut(s) 234
PspXI VCTCGAGB 1 cut(s) 929
PstI CTGCAG 1 cut(s) 479
PstNI CAGNNNCTG 1 cut(s) 971
PsuI RGATCY 2 cut(s) 300, 356
PvuI CGATCG 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 5 cut(s) 407, 776, 986, 1019, 1028
SatI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 904, 952, 972
Sau3AI GATC 5 cut(s) 44, 262, 300, 356, 606
Sau96I GGNCC 2 cut(s) 158, 234
SchI GAGTC 4 cut(s) 76, 251, 740, 884
ScrFI CCNGG 6 cut(s) 187, 232, 246, 794, 980, 1195
SduI GDGCHC 2 cut(s) 128, 210
SfaNI GCATC 7 cut(s) 21, 325, 472, 481, 818, 958, 1083
SfcI CTRYAG 2 cut(s) 374, 475
Sfr274I CTCGAG 1 cut(s) 929
SinI GGWCC 1 cut(s) 234
SlaI CTCGAG 1 cut(s) 929
SmlI CTYRAG 6 cut(s) 295, 689, 698, 851, 898, 929
SmoI CTYRAG 6 cut(s) 295, 689, 698, 851, 898, 929
Sse9I AATT 4 cut(s) 351, 517, 817, 1128
SsiI CCGC 6 cut(s) 6, 73, 147, 155, 172, 196
SspMI CTAG 1 cut(s) 383
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 6 cut(s) 185, 230, 244, 792, 978, 1193
StyI CCWWGG 3 cut(s) 547, 669, 744
TaaI ACNGT 3 cut(s) 320, 378, 713
TaiI ACGT 1 cut(s) 154
TaqI TCGA 4 cut(s) 43, 210, 609, 930
TasI AATT 4 cut(s) 351, 517, 817, 1128
TatI WGTACW 1 cut(s) 554
TfiI GAWTC 2 cut(s) 342, 569
Tru1I TTAA 5 cut(s) 407, 776, 986, 1019, 1028
Tru9I TTAA 5 cut(s) 407, 776, 986, 1019, 1028
TscAI CASTG 5 cut(s) 133, 465, 667, 923, 1060
TseFI GTSAC 3 cut(s) 250, 521, 581
TseI GCWGC 8 cut(s) 182, 441, 474, 633, 789, 903, 951, 971
Tsp45I GTSAC 3 cut(s) 250, 521, 581
TspDTI ATGAA 3 cut(s) 191, 357, 669
TspGWI ACGGA 3 cut(s) 259, 347, 877
TspRI CASTG 5 cut(s) 133, 465, 667, 923, 1060
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 817
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 3 cut(s) 169, 506, 678
XhoI CTCGAG 1 cut(s) 929
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.