Rh4CG464200

Leucine Rich repeat

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
69424478 .. 69425904
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG464200.1

Sequence Viewer

Length: 1224 bp
ATGGGCGGAAGCATCAACGAGGCACTGAGAGATGACGAGCTTCGATCGGTGCTGGCGAAGCTGGAGAGTCAGCGGGACAAGGAGGTGTTCGGGTTGGTGTGCAAGAGGTGGCTTCACTTGCAGAGCACTGAGAGGAGGAAGCTGTCCGCACGTGCGGGGCCTCACATGCTCCGCAAAATGGCCGCCAGGTTCTCCCGCCTTCATGAGCTCGACCTCTCCCAGTCCCTTTCCAGGTCATTCTATCCAGATGTCACCGACTCTGATCTCTCCGTCATTGCCAATGGCTTCAACTGCTTGAGGCTCCTCACTCTCCAAAACTGTAAAGGAGTTACGGATGCTGGAATCATTGCAATTGGATCTGGTCTTTCATCACTACAGTCTCTAGATGTGTCGTATTGCAGAAAGTTAACAGACAAAGGATTATCAGCTGTTGCTCAGGGCTGCTCTGACCTTCGCGCACTGCATCTTGCCGGCTGCAGATTTATAACCGATGCATTATTACATGCTCTTTCAAACAATTGTCACTCTTTACAACACTTGGCTCTCCAAGGCTGTACTAATATCTCCGATTCTGGACTTAGTGATCTTGTAAATGGATGTCAACAGATCGAGTTTTTAGACATCAACAAATGCAGCAACATTGGAGACATTGGCGTTTCCAGTGTCTCCAAGGCATGTTCATCTTCTCTCAAGACACTCAAGCTATTGGACTGTTACAAAGTCGGGGATGAGTCTATAATATCCTTGGCCACATTCTGCAAAAATCTTGAAACTTTAATCATTGGTGGCTGCCGGGACATATCTGACGCATCAATAAATTTGCTGGCCTCTTCTTGTAAGGCTAGTCTCAAGAACTTACGGATGGATTGGTGTTTAAATATCACAGACTCTTCTTTGAGCTGCATTCTGGTTCAGTGCAGAAACCTCGAGGCTCTTGACATTGGGTGCTGCGAGGAGGTGTCAGATGCTGCCTTTCAGGGTTTAAAAGGTGGTGAAGTTGAGCTGACCCTGACCTTAAAGGTCTTAAAGGTTAGTAACTGCCCGAAAATCAGTGTGGCAGGGATAGCTATGGTGTTGGAGAAATGCGAGATGCTAAAATACTTGGATGTAAGGTCATGCCCACAAATTACAAAGGGGGGCTGTGATGAGGCCGGATTGCAGTTTCCTCAATCTTGTAAAGTCAACTTCACCGGGAGTTTAGGGGAGCCTGATGTCTTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

407

Amino Acids

43.91

Weight (kDa)

6.4

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 62 - 171 4.8e-12 Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_At5g56370 PF24758 123 - 235 2.3e-08 FBD-associated F-box protein At5g56370, LRR repeats
DUF7885 PF25372 170 - 381 2.3e-18 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23340
fragaria_vesca FvH4_4g37160
prunus_persica Prupe.1G349400_v2.0.a1
pyrus_communis pycom13g00250
rosa_chinensis RchiOBHm_Chr4g0446961
rosa_laevigata RLG00000005617
rosa_multiflora Rmu_sc0001753.1_g000005 Rmu_sc0011539.1_g000001
rosa_roxburghii Rroxscaffold_5G00387290
rosa_rugosa Rorug04G0376500
rosa_samantha Rh4AG438000 Rh4BG446900 Rh4CG464200 Rh4DG445700
rosa_wichuraiana Rw4G037460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AbsI CCTCGAGG 1 cut(s) 926
AccII CGCG 1 cut(s) 456
AciI CCGC 7 cut(s) 6, 73, 147, 155, 172, 183, 196
AclWI GGATC 1 cut(s) 364
AcoI YGGCCR 2 cut(s) 180, 747
AcsI RAATTY 1 cut(s) 817
AcvI CACGTG 1 cut(s) 152
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 2 cut(s) 178, 231
AgsI TTSAA 3 cut(s) 289, 513, 770
AjnI CCWGG 2 cut(s) 185, 230
AluBI AGCT 9 cut(s) 40, 61, 142, 208, 428, 703, 900, 1003, 1067
AluI AGCT 9 cut(s) 40, 61, 142, 208, 428, 703, 900, 1003, 1067
Alw21I GWGCWC 2 cut(s) 128, 210
Alw26I GTCTC 4 cut(s) 384, 639, 670, 851
AlwI GGATC 1 cut(s) 364
AlwNI CAGNNNCTG 1 cut(s) 968
Ama87I CYCGRG 1 cut(s) 926
AoxI GGCC 5 cut(s) 158, 180, 747, 825, 1149
ApeKI GCWGC 7 cut(s) 441, 474, 633, 789, 900, 948, 968
ApoI RAATTY 1 cut(s) 817
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 158
AsuC2I CCSGG 2 cut(s) 794, 1192
AsuHPI GGTGA 3 cut(s) 244, 1004, 1180
AvaI CYCGRG 1 cut(s) 926
BalI TGGCCA 1 cut(s) 749
BanII GRGCYC 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 128, 210
BbvI GCAGC 7 cut(s) 428, 461, 645, 776, 887, 935, 955
BccI CCATC 1 cut(s) 856
BcgI CGANNNNNNTGC 2 cut(s) 907, 941
BciT130I CCWGG 2 cut(s) 187, 232
BcnI CCSGG 2 cut(s) 794, 1192
BcoDI GTCTC 4 cut(s) 384, 639, 670, 851
BfaI CTAG 2 cut(s) 383, 843
BfmI CTRYAG 2 cut(s) 374, 475
BisI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 901, 949, 969
BlsI GCNGC 8 cut(s) 184, 443, 476, 635, 791, 902, 950, 970
Bme1390I CCNGG 4 cut(s) 187, 232, 794, 1192
BmeT110I CYCGRG 1 cut(s) 926
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 3 cut(s) 159, 302, 1206
BmrFI CCNGG 4 cut(s) 187, 232, 794, 1192
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 7 cut(s) 21, 325, 472, 481, 818, 955, 1080
BmuI ACTGGG 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 4 cut(s) 316, 674, 683, 833
BpuMI CCSGG 2 cut(s) 794, 1192
BsaAI YACGTR 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 547, 669, 744
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 231
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 2 cut(s) 220, 660
Bse3DI GCAATG 2 cut(s) 273, 345
BseBI CCWGG 2 cut(s) 187, 232
BseDI CCNNGG 3 cut(s) 547, 669, 744
BseGI GGATG 5 cut(s) 340, 602, 733, 867, 1111
BseLI CCNNNNNNNGG 2 cut(s) 178, 231
BseMI GCAATG 2 cut(s) 273, 345
BseMII CTCAG 3 cut(s) 17, 120, 449
BseNI ACTGG 2 cut(s) 220, 660
BseRI GAGGAG 3 cut(s) 148, 293, 968
BseXI GCAGC 7 cut(s) 428, 461, 645, 776, 887, 935, 955
BsgI GTGCAG 1 cut(s) 937
Bsh1236I CGCG 1 cut(s) 456
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 5 cut(s) 160, 182, 749, 827, 1151
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 2 cut(s) 128, 210
BsiHKCI CYCGRG 1 cut(s) 926
BsiSI CCGG 4 cut(s) 471, 793, 1152, 1191
BslFI GGGAC 3 cut(s) 89, 208, 809
BslI CCNNNNNNNGG 2 cut(s) 178, 231
BsmAI GTCTC 4 cut(s) 384, 639, 670, 851
BsmFI GGGAC 3 cut(s) 89, 208, 809
BsmI GAATGC 1 cut(s) 903
BsnI GGCC 5 cut(s) 160, 182, 749, 827, 1151
BsoBI CYCGRG 1 cut(s) 926
Bsp1286I GDGCHC 2 cut(s) 128, 210
Bsp143I GATC 5 cut(s) 44, 262, 356, 583, 606
BspACI CCGC 7 cut(s) 6, 73, 147, 155, 172, 183, 196
BspANI GGCC 5 cut(s) 160, 182, 749, 827, 1151
BspCNI CTCAG 3 cut(s) 18, 121, 448
BspFNI CGCG 1 cut(s) 456
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 3 cut(s) 159, 302, 1206
BspMAI CTGCAG 1 cut(s) 479
BspPI GGATC 1 cut(s) 364
BsrDI GCAATG 2 cut(s) 273, 345
BsrFI RCCGGY 1 cut(s) 470
BsrI ACTGG 2 cut(s) 220, 660
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 3 cut(s) 547, 669, 744
BssMI GATC 5 cut(s) 44, 262, 356, 583, 606
BssT1I CCWWGG 3 cut(s) 547, 669, 744
Bst2UI CCWGG 2 cut(s) 187, 232
Bst4CI ACNGT 3 cut(s) 320, 378, 713
Bst6I CTCTTC 2 cut(s) 835, 895
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 54, 472, 825
BstDEI CTNAG 4 cut(s) 26, 129, 435, 578
BstF5I GGATG 5 cut(s) 340, 602, 733, 867, 1111
BstFNI CGCG 1 cut(s) 456
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 5 cut(s) 47, 265, 359, 586, 609
BstMAI GTCTC 4 cut(s) 384, 639, 670, 851
BstMBI GATC 5 cut(s) 44, 262, 356, 583, 606
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 5 cut(s) 58, 118, 166, 291, 1064
BstNI CCWGG 2 cut(s) 187, 232
BstNSI RCATGY 3 cut(s) 169, 506, 678
BstSCI CCNGG 4 cut(s) 185, 230, 792, 1190
BstSFI CTRYAG 2 cut(s) 374, 475
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 7 cut(s) 428, 461, 645, 776, 887, 935, 955
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 5 cut(s) 160, 182, 749, 827, 1151
BtsCI GGATG 5 cut(s) 340, 602, 733, 867, 1111
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 6 cut(s) 23, 126, 458, 667, 920, 1057
Cac8I GCNNGC 3 cut(s) 54, 472, 825
CaiI CAGNNNCTG 1 cut(s) 968
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 815
Csp6I GTAC 1 cut(s) 555
CviAII CATG 5 cut(s) 166, 203, 503, 675, 1116
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 4 cut(s) 26, 129, 435, 578
DpnI GATC 5 cut(s) 46, 264, 358, 585, 608
DpnII GATC 5 cut(s) 44, 262, 356, 583, 606
DraI TTTAAA 2 cut(s) 876, 984
EaeI YGGCCR 2 cut(s) 180, 747
Eam1104I CTCTTC 2 cut(s) 835, 895
EarI CTCTTC 2 cut(s) 835, 895
EciI GGCGGA 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 3 cut(s) 547, 669, 744
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco72I CACGTG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 926
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 185, 230
EcoT14I CCWWGG 3 cut(s) 547, 669, 744
EcoT22I ATGCAT 1 cut(s) 496
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 3 cut(s) 547, 669, 744
FaeI CATG 5 cut(s) 169, 206, 506, 678, 1119
FaiI YATR 9 cut(s) 167, 204, 485, 504, 676, 737, 800, 1070, 1117
FaqI GGGAC 3 cut(s) 89, 208, 809
FatI CATG 5 cut(s) 165, 202, 502, 674, 1115
FauI CCCGC 3 cut(s) 66, 148, 203
Fnu4HI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 901, 949, 969
FokI GGATG 5 cut(s) 347, 609, 740, 874, 1118
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 901, 949, 969
FspBI CTAG 2 cut(s) 383, 843
GlaI GCGC 1 cut(s) 457
GluI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 901, 949, 969
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 5 cut(s) 160, 182, 749, 827, 1151
HapII CCGG 4 cut(s) 471, 793, 1152, 1191
HgaI GACGC 1 cut(s) 815
HhaI GCGC 1 cut(s) 458
Hin1II CATG 5 cut(s) 169, 206, 506, 678, 1119
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 3 cut(s) 408, 602, 1183
HindII GTYRAC 3 cut(s) 408, 602, 1183
HinfI GANTC 6 cut(s) 67, 257, 342, 569, 731, 887
HpaI GTTAAC 1 cut(s) 408
HpaII CCGG 4 cut(s) 471, 793, 1152, 1191
HphI GGTGA 3 cut(s) 244, 1004, 1180
Hpy166II GTNNAC 3 cut(s) 408, 602, 1183
Hpy188I TCNGA 5 cut(s) 262, 448, 568, 805, 964
Hpy188III TCNNGA 8 cut(s) 203, 245, 383, 573, 691, 767, 850, 935
Hpy8I GTNNAC 3 cut(s) 408, 602, 1183
HpyAV CCTTC 2 cut(s) 209, 461
HpyCH4III ACNGT 3 cut(s) 320, 378, 713
HpyCH4IV ACGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 118, 166, 291, 1064
HpyF3I CTNAG 4 cut(s) 26, 129, 435, 578
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 5 cut(s) 169, 206, 506, 678, 1119
HspAI GCGC 1 cut(s) 456
KroI GCCGGC 1 cut(s) 470
KroNI GCCGGC 1 cut(s) 472
KspAI GTTAAC 1 cut(s) 408
Kzo9I GATC 5 cut(s) 44, 262, 356, 583, 606
LmnI GCTCC 3 cut(s) 174, 306, 1204
Lsp1109I GCAGC 7 cut(s) 428, 461, 645, 776, 887, 935, 955
LweI GCATC 7 cut(s) 21, 325, 472, 481, 818, 955, 1080
MaeI CTAG 2 cut(s) 383, 843
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 5 cut(s) 250, 328, 521, 713, 1034
MalI GATC 5 cut(s) 46, 264, 358, 585, 608
MboI GATC 5 cut(s) 44, 262, 356, 583, 606
MboII GAAGA 3 cut(s) 675, 822, 882
MfeI CAATTG 2 cut(s) 351, 517
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 2 cut(s) 128, 210
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 4 cut(s) 351, 517, 817, 1125
MluNI TGGCCA 1 cut(s) 749
MlyI GAGTC 4 cut(s) 76, 251, 740, 881
MmeI TCCRAC 1 cut(s) 1056
Mox20I TGGCCA 1 cut(s) 749
Mph1103I ATGCAT 1 cut(s) 496
MroNI GCCGGC 1 cut(s) 470
MscI TGGCCA 1 cut(s) 749
MseI TTAA 6 cut(s) 407, 776, 875, 983, 1016, 1025
Msp20I TGGCCA 1 cut(s) 749
MspA1I CMGCKG 2 cut(s) 73, 428
MspI CCGG 4 cut(s) 471, 793, 1152, 1191
MspR9I CCNGG 4 cut(s) 187, 232, 794, 1192
MunI CAATTG 2 cut(s) 351, 517
Mva1269I GAATGC 1 cut(s) 903
MvaI CCWGG 2 cut(s) 187, 232
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 5 cut(s) 58, 118, 166, 291, 1064
NaeI GCCGGC 1 cut(s) 472
NciI CCSGG 2 cut(s) 794, 1192
NdeII GATC 5 cut(s) 44, 262, 356, 583, 606
NgoMIV GCCGGC 1 cut(s) 470
NlaIII CATG 5 cut(s) 169, 206, 506, 678, 1119
NlaIV GGNNCC 3 cut(s) 159, 302, 1206
NmuCI GTSAC 2 cut(s) 250, 521
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 3 cut(s) 169, 506, 678
PaeR7I CTCGAG 1 cut(s) 926
PagI TCATGA 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PctI GAATGC 1 cut(s) 903
PdiI GCCGGC 1 cut(s) 472
PfeI GAWTC 2 cut(s) 342, 569
PkrI GCNGC 8 cut(s) 184, 443, 476, 635, 791, 902, 950, 970
Ple19I CGATCG 1 cut(s) 47
PleI GAGTC 4 cut(s) 75, 251, 739, 881
PmaCI CACGTG 1 cut(s) 152
PmlI CACGTG 1 cut(s) 152
PpsI GAGTC 4 cut(s) 75, 251, 739, 881
Ppu21I YACGTR 1 cut(s) 152
PsiI TTATAA 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 185, 230
PspCI CACGTG 1 cut(s) 152
PspGI CCWGG 2 cut(s) 185, 230
PspN4I GGNNCC 3 cut(s) 159, 302, 1206
PspPI GGNCC 1 cut(s) 158
PspXI VCTCGAGB 1 cut(s) 926
PstI CTGCAG 1 cut(s) 479
PstNI CAGNNNCTG 1 cut(s) 968
PsuI RGATCY 1 cut(s) 356
PvuI CGATCG 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 6 cut(s) 407, 776, 875, 983, 1016, 1025
SatI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 901, 949, 969
Sau3AI GATC 5 cut(s) 44, 262, 356, 583, 606
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 4 cut(s) 76, 251, 740, 881
ScrFI CCNGG 4 cut(s) 187, 232, 794, 1192
SduI GDGCHC 2 cut(s) 128, 210
SfaNI GCATC 7 cut(s) 21, 325, 472, 481, 818, 955, 1080
SfcI CTRYAG 2 cut(s) 374, 475
Sfr274I CTCGAG 1 cut(s) 926
SlaI CTCGAG 1 cut(s) 926
SmlI CTYRAG 5 cut(s) 295, 689, 698, 848, 926
SmoI CTYRAG 5 cut(s) 295, 689, 698, 848, 926
Sse9I AATT 4 cut(s) 351, 517, 817, 1125
SsiI CCGC 7 cut(s) 6, 73, 147, 155, 172, 183, 196
SspMI CTAG 2 cut(s) 383, 843
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 4 cut(s) 185, 230, 792, 1190
StyI CCWWGG 3 cut(s) 547, 669, 744
TaaI ACNGT 3 cut(s) 320, 378, 713
TaiI ACGT 1 cut(s) 154
TaqI TCGA 4 cut(s) 43, 210, 609, 927
TasI AATT 4 cut(s) 351, 517, 817, 1125
TatI WGTACW 1 cut(s) 554
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 2 cut(s) 342, 569
Tru1I TTAA 6 cut(s) 407, 776, 875, 983, 1016, 1025
Tru9I TTAA 6 cut(s) 407, 776, 875, 983, 1016, 1025
TscAI CASTG 6 cut(s) 30, 133, 465, 667, 920, 1057
TseFI GTSAC 2 cut(s) 250, 521
TseI GCWGC 7 cut(s) 441, 474, 633, 789, 900, 948, 968
Tsp45I GTSAC 2 cut(s) 250, 521
TspDTI ATGAA 3 cut(s) 191, 357, 669
TspGWI ACGGA 3 cut(s) 259, 347, 874
TspRI CASTG 6 cut(s) 30, 133, 465, 667, 920, 1057
XapI RAATTY 1 cut(s) 817
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 3 cut(s) 169, 506, 678
XhoI CTCGAG 1 cut(s) 926
XspI CTAG 2 cut(s) 383, 843
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.