RLG00000005617

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015952
Physical Location & Seq
Reverse (-)
331714 .. 333151
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005617

Sequence Viewer

Length: 1227 bp
ATGGGCGGAAGCATCAACGAGGCACTGAGAGATGACGAACTGCGATGGGTGCTGGCGAAGCTGGAGAGTCAGCGGGACAAGGAGGTGTTCGGGTTGGTGTGCAAGAGGTGGCTTCACTTGCAGAGCACTGAGAGGAGGAGGCTGTCCGCACGTGCGGGGCCTCACATGCTCCGCAAAATGGCTGCCAGGTTCTCCCGCCTTCATGAGCTCGACCTCTCCCAGTCCCTTTCCAGGTCCTTCTATCCAGGTGTCACCGACTCTGATCTCTCCGTCATTGCCAATGGCTTCAACTGCTTGAGGCTCCTCACTCTCCAAAACTGTAAAGGAGTTACGGATGCTGGAATCATTGCAATTGGATCTGGTCTTTCATCACTACAGTCTCTAGATGTATCGTATTGCAGAAAGTTAACAGACAAAGGATTATCAGCTGTTGCTCAGGGCTGCTCTGACCTTCGCGCACTCCATCTTGCCGGCTGCAGATTTATAACCGATGCACTATTACGTGCTCTTTCAAACAATTGTCACTCTTTACAACACTTGGGTCTCCAAGGCTGTACTAATATCTCTGATTCTGGACTTAGTGATCTTGTAAATGGATGTCAACAGATCGAGTTTTTAGACATCAACAAATGCAGCAACATTGGAGACATTGGCGTTTCCTGTGTCTCCAAGGCATGTTCATCTTCTCTCAAGACACTCAAGCTGTTGGACTGTTACAAAGTCGGGGACGAATCTATAATATCCTTGGCCACATTCTGCAAAAATCTTGAAACTTTAATCATTGGTGGCTGCCGGGACGTATCTGACGCATCAATAAATTTGCTGGCCTCTTCTTGTAAGGGTAGTCTCAAGAACTTACGGATGGATTGGTGTTTAAATATCACAGACTCCTCTTTGAGCTGCATTCTGGTTCAGTGCAGAAACCTCGAGGCTCTTGACATTGGGTGCTGCGAGGAGGTGTCAGATGCTGCCTTTCAGGGTTTAAATGGTGGTGAAGTTGAGCTGACCCTGACCTCCTTAAAGGTCTTAAAGGTTAGTAACTGCCCGAAAATCAGTGTGGCAGGGATAGCTATGGTGTTGGAGAAATGCGACATGCTAAAATACTTGGATGTAAGGTCATGCCCACAAATTACAAAGGGGGGCTGTGATGAGGCCGGATTGCAGTTTCCTCAATCTTGTAAAGTCAACTTCACCGGGAGTTTAGGGGAGCCTGATGTCCTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

409

Amino Acids

44.03

Weight (kDa)

6.59

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 62 - 171 7.3e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_At5g56370 PF24758 123 - 238 7e-09 FBD-associated F-box protein At5g56370, LRR repeats
DUF7885 PF25372 170 - 382 2.2e-15 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23340
fragaria_vesca FvH4_4g37160
prunus_persica Prupe.1G349400_v2.0.a1
pyrus_communis pycom13g00250
rosa_chinensis RchiOBHm_Chr4g0446961
rosa_laevigata RLG00000005617
rosa_multiflora Rmu_sc0001753.1_g000005 Rmu_sc0011539.1_g000001
rosa_roxburghii Rroxscaffold_5G00387290
rosa_rugosa Rorug04G0376500
rosa_samantha Rh4AG438000 Rh4BG446900 Rh4CG464200 Rh4DG445700
rosa_wichuraiana Rw4G037460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AbsI CCTCGAGG 1 cut(s) 926
AccII CGCG 1 cut(s) 456
AciI CCGC 6 cut(s) 6, 73, 147, 155, 172, 196
AclWI GGATC 1 cut(s) 364
AcoI YGGCCR 1 cut(s) 747
AcsI RAATTY 1 cut(s) 817
AcvI CACGTG 1 cut(s) 152
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 2 cut(s) 178, 231
AgsI TTSAA 3 cut(s) 289, 513, 770
AjnI CCWGG 3 cut(s) 185, 230, 244
AluBI AGCT 7 cut(s) 61, 208, 428, 703, 900, 1003, 1070
AluI AGCT 7 cut(s) 61, 208, 428, 703, 900, 1003, 1070
Alw21I GWGCWC 3 cut(s) 128, 210, 508
Alw26I GTCTC 5 cut(s) 384, 548, 639, 670, 851
AlwI GGATC 1 cut(s) 364
AlwNI CAGNNNCTG 1 cut(s) 968
Ama87I CYCGRG 1 cut(s) 926
AoxI GGCC 4 cut(s) 158, 747, 825, 1152
ApeKI GCWGC 8 cut(s) 182, 441, 474, 633, 789, 900, 948, 968
ApoI RAATTY 1 cut(s) 817
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 2 cut(s) 158, 234
AsuC2I CCSGG 2 cut(s) 794, 1195
AsuHPI GGTGA 3 cut(s) 244, 1004, 1183
AvaI CYCGRG 1 cut(s) 926
AvaII GGWCC 1 cut(s) 234
BalI TGGCCA 1 cut(s) 749
BanII GRGCYC 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 152
Bbv12I GWGCWC 3 cut(s) 128, 210, 508
BbvI GCAGC 8 cut(s) 169, 428, 461, 645, 776, 887, 935, 955
BccI CCATC 3 cut(s) 39, 471, 856
BcgI CGANNNNNNTGC 2 cut(s) 907, 941
BciT130I CCWGG 3 cut(s) 187, 232, 246
BcnI CCSGG 2 cut(s) 794, 1195
BcoDI GTCTC 5 cut(s) 384, 548, 639, 670, 851
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 2 cut(s) 374, 475
BisI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 901, 949, 969
BlsI GCNGC 8 cut(s) 184, 443, 476, 635, 791, 902, 950, 970
Bme1390I CCNGG 5 cut(s) 187, 232, 246, 794, 1195
Bme18I GGWCC 1 cut(s) 234
BmeT110I CYCGRG 1 cut(s) 926
BmgT120I GGNCC 2 cut(s) 158, 234
BmiI GGNNCC 3 cut(s) 159, 302, 1209
BmrFI CCNGG 5 cut(s) 187, 232, 246, 794, 1195
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 5 cut(s) 21, 325, 481, 818, 955
BmuI ACTGGG 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 4 cut(s) 316, 674, 683, 833
BpuMI CCSGG 2 cut(s) 794, 1195
BsaAI YACGTR 2 cut(s) 152, 503
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 3 cut(s) 547, 669, 744
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 231
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 273, 345
BseBI CCWGG 3 cut(s) 187, 232, 246
BseDI CCNNGG 3 cut(s) 547, 669, 744
BseGI GGATG 4 cut(s) 340, 602, 867, 1114
BseLI CCNNNNNNNGG 2 cut(s) 178, 231
BseMI GCAATG 2 cut(s) 273, 345
BseMII CTCAG 3 cut(s) 17, 120, 449
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 5 cut(s) 148, 151, 293, 880, 968
BseXI GCAGC 8 cut(s) 169, 428, 461, 645, 776, 887, 935, 955
BsgI GTGCAG 1 cut(s) 937
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 4 cut(s) 160, 749, 827, 1154
BsiHKAI GWGCWC 3 cut(s) 128, 210, 508
BsiHKCI CYCGRG 1 cut(s) 926
BsiSI CCGG 4 cut(s) 471, 793, 1155, 1194
BslFI GGGAC 4 cut(s) 89, 208, 740, 809
BslI CCNNNNNNNGG 2 cut(s) 178, 231
BsmAI GTCTC 5 cut(s) 384, 548, 639, 670, 851
BsmFI GGGAC 4 cut(s) 89, 208, 740, 809
BsmI GAATGC 1 cut(s) 903
BsnI GGCC 4 cut(s) 160, 749, 827, 1154
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 926
Bsp1286I GDGCHC 3 cut(s) 128, 210, 508
Bsp143I GATC 4 cut(s) 262, 356, 583, 606
BspACI CCGC 6 cut(s) 6, 73, 147, 155, 172, 196
BspANI GGCC 4 cut(s) 160, 749, 827, 1154
BspCNI CTCAG 3 cut(s) 18, 121, 448
BspFNI CGCG 1 cut(s) 456
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 3 cut(s) 159, 302, 1209
BspMAI CTGCAG 1 cut(s) 479
BspPI GGATC 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 273, 345
BsrFI RCCGGY 1 cut(s) 470
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 3 cut(s) 547, 669, 744
BssMI GATC 4 cut(s) 262, 356, 583, 606
BssT1I CCWWGG 3 cut(s) 547, 669, 744
Bst2UI CCWGG 3 cut(s) 187, 232, 246
Bst4CI ACNGT 3 cut(s) 320, 378, 713
Bst6I CTCTTC 1 cut(s) 835
BstBAI YACGTR 2 cut(s) 152, 503
BstC8I GCNNGC 3 cut(s) 54, 472, 825
BstDEI CTNAG 4 cut(s) 26, 129, 435, 578
BstF5I GGATG 4 cut(s) 340, 602, 867, 1114
BstFNI CGCG 1 cut(s) 456
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 4 cut(s) 265, 359, 586, 609
BstMAI GTCTC 5 cut(s) 384, 548, 639, 670, 851
BstMBI GATC 4 cut(s) 262, 356, 583, 606
BstMWI GCNNNNNNNGC 6 cut(s) 49, 58, 118, 166, 291, 1067
BstNI CCWGG 3 cut(s) 187, 232, 246
BstNSI RCATGY 3 cut(s) 169, 678, 1096
BstSCI CCNGG 5 cut(s) 185, 230, 244, 792, 1193
BstSFI CTRYAG 2 cut(s) 374, 475
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 8 cut(s) 169, 428, 461, 645, 776, 887, 935, 955
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 4 cut(s) 160, 749, 827, 1154
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 4 cut(s) 340, 602, 867, 1114
BtsIMutI CAGTG 4 cut(s) 23, 126, 920, 1060
Cac8I GCNNGC 3 cut(s) 54, 472, 825
CaiI CAGNNNCTG 1 cut(s) 968
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 2 cut(s) 158, 234
CseI GACGC 1 cut(s) 815
Csp6I GTAC 1 cut(s) 555
CviAII CATG 5 cut(s) 166, 203, 675, 1093, 1119
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 4 cut(s) 26, 129, 435, 578
DpnI GATC 4 cut(s) 264, 358, 585, 608
DpnII GATC 4 cut(s) 262, 356, 583, 606
DraI TTTAAA 2 cut(s) 876, 984
EaeI YGGCCR 1 cut(s) 747
Eam1104I CTCTTC 1 cut(s) 835
EarI CTCTTC 1 cut(s) 835
EciI GGCGGA 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 3 cut(s) 547, 669, 744
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 208
Eco72I CACGTG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 926
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 2 cut(s) 158, 234
EcoRII CCWGG 3 cut(s) 185, 230, 244
EcoT14I CCWWGG 3 cut(s) 547, 669, 744
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 3 cut(s) 547, 669, 744
FaeI CATG 5 cut(s) 169, 206, 678, 1096, 1122
FaiI YATR 8 cut(s) 167, 204, 485, 676, 737, 1073, 1094, 1120
FaqI GGGAC 4 cut(s) 89, 208, 740, 809
FatI CATG 5 cut(s) 165, 202, 674, 1092, 1118
FauI CCCGC 3 cut(s) 66, 148, 203
Fnu4HI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 901, 949, 969
FokI GGATG 4 cut(s) 347, 609, 874, 1121
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 901, 949, 969
FspBI CTAG 1 cut(s) 383
GlaI GCGC 1 cut(s) 457
GluI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 901, 949, 969
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 4 cut(s) 160, 749, 827, 1154
HapII CCGG 4 cut(s) 471, 793, 1155, 1194
HgaI GACGC 1 cut(s) 815
HhaI GCGC 1 cut(s) 458
Hin1II CATG 5 cut(s) 169, 206, 678, 1096, 1122
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 3 cut(s) 408, 602, 1186
HindII GTYRAC 3 cut(s) 408, 602, 1186
HinfI GANTC 6 cut(s) 67, 257, 342, 569, 731, 887
HpaI GTTAAC 1 cut(s) 408
HpaII CCGG 4 cut(s) 471, 793, 1155, 1194
HphI GGTGA 3 cut(s) 244, 1004, 1183
Hpy166II GTNNAC 3 cut(s) 408, 602, 1186
Hpy188I TCNGA 5 cut(s) 262, 448, 568, 805, 964
Hpy188III TCNNGA 7 cut(s) 203, 383, 573, 691, 767, 850, 935
Hpy8I GTNNAC 3 cut(s) 408, 602, 1186
HpyAV CCTTC 3 cut(s) 209, 247, 461
HpyCH4III ACNGT 3 cut(s) 320, 378, 713
HpyCH4IV ACGT 3 cut(s) 151, 502, 798
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 58, 118, 166, 291, 1067
HpyF3I CTNAG 4 cut(s) 26, 129, 435, 578
HpySE526I ACGT 3 cut(s) 151, 502, 798
Hsp92II CATG 5 cut(s) 169, 206, 678, 1096, 1122
HspAI GCGC 1 cut(s) 456
KroI GCCGGC 1 cut(s) 470
KroNI GCCGGC 1 cut(s) 472
KspAI GTTAAC 1 cut(s) 408
Kzo9I GATC 4 cut(s) 262, 356, 583, 606
LmnI GCTCC 3 cut(s) 174, 306, 1207
Lsp1109I GCAGC 8 cut(s) 169, 428, 461, 645, 776, 887, 935, 955
LweI GCATC 5 cut(s) 21, 325, 481, 818, 955
MaeI CTAG 1 cut(s) 383
MaeII ACGT 3 cut(s) 151, 502, 798
MaeIII GTNAC 5 cut(s) 250, 328, 521, 713, 1037
MalI GATC 4 cut(s) 264, 358, 585, 608
MboI GATC 4 cut(s) 262, 356, 583, 606
MboII GAAGA 2 cut(s) 675, 822
MfeI CAATTG 2 cut(s) 351, 517
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 3 cut(s) 128, 210, 508
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 4 cut(s) 351, 517, 817, 1128
MluNI TGGCCA 1 cut(s) 749
MlyI GAGTC 3 cut(s) 76, 251, 881
MmeI TCCRAC 2 cut(s) 687, 1059
Mox20I TGGCCA 1 cut(s) 749
MroNI GCCGGC 1 cut(s) 470
MscI TGGCCA 1 cut(s) 749
MseI TTAA 6 cut(s) 407, 776, 875, 983, 1019, 1028
Msp20I TGGCCA 1 cut(s) 749
MspA1I CMGCKG 2 cut(s) 73, 428
MspI CCGG 4 cut(s) 471, 793, 1155, 1194
MspR9I CCNGG 5 cut(s) 187, 232, 246, 794, 1195
MunI CAATTG 2 cut(s) 351, 517
Mva1269I GAATGC 1 cut(s) 903
MvaI CCWGG 3 cut(s) 187, 232, 246
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 6 cut(s) 49, 58, 118, 166, 291, 1067
NaeI GCCGGC 1 cut(s) 472
NciI CCSGG 2 cut(s) 794, 1195
NdeII GATC 4 cut(s) 262, 356, 583, 606
NgoMIV GCCGGC 1 cut(s) 470
NlaIII CATG 5 cut(s) 169, 206, 678, 1096, 1122
NlaIV GGNNCC 3 cut(s) 159, 302, 1209
NmuCI GTSAC 2 cut(s) 250, 521
NspI RCATGY 3 cut(s) 169, 678, 1096
PaeR7I CTCGAG 1 cut(s) 926
PagI TCATGA 1 cut(s) 202
PctI GAATGC 1 cut(s) 903
PdiI GCCGGC 1 cut(s) 472
PfeI GAWTC 3 cut(s) 342, 569, 731
PkrI GCNGC 8 cut(s) 184, 443, 476, 635, 791, 902, 950, 970
PleI GAGTC 3 cut(s) 75, 251, 881
PmaCI CACGTG 1 cut(s) 152
PmlI CACGTG 1 cut(s) 152
PpsI GAGTC 3 cut(s) 75, 251, 881
Ppu21I YACGTR 2 cut(s) 152, 503
PpuMI RGGWCCY 1 cut(s) 234
PsiI TTATAA 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 234
Psp6I CCWGG 3 cut(s) 185, 230, 244
PspCI CACGTG 1 cut(s) 152
PspGI CCWGG 3 cut(s) 185, 230, 244
PspN4I GGNNCC 3 cut(s) 159, 302, 1209
PspPI GGNCC 2 cut(s) 158, 234
PspPPI RGGWCCY 1 cut(s) 234
PspXI VCTCGAGB 1 cut(s) 926
PstI CTGCAG 1 cut(s) 479
PstNI CAGNNNCTG 1 cut(s) 968
PsuI RGATCY 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 6 cut(s) 407, 776, 875, 983, 1019, 1028
SatI GCNGC 8 cut(s) 183, 442, 475, 634, 790, 901, 949, 969
Sau3AI GATC 4 cut(s) 262, 356, 583, 606
Sau96I GGNCC 2 cut(s) 158, 234
SchI GAGTC 3 cut(s) 76, 251, 881
ScrFI CCNGG 5 cut(s) 187, 232, 246, 794, 1195
SduI GDGCHC 3 cut(s) 128, 210, 508
SfaNI GCATC 5 cut(s) 21, 325, 481, 818, 955
SfcI CTRYAG 2 cut(s) 374, 475
Sfr274I CTCGAG 1 cut(s) 926
SinI GGWCC 1 cut(s) 234
SlaI CTCGAG 1 cut(s) 926
SmlI CTYRAG 5 cut(s) 295, 689, 698, 848, 926
SmoI CTYRAG 5 cut(s) 295, 689, 698, 848, 926
Sse9I AATT 4 cut(s) 351, 517, 817, 1128
SsiI CCGC 6 cut(s) 6, 73, 147, 155, 172, 196
SspMI CTAG 1 cut(s) 383
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 5 cut(s) 185, 230, 244, 792, 1193
StyI CCWWGG 3 cut(s) 547, 669, 744
TaaI ACNGT 3 cut(s) 320, 378, 713
TaiI ACGT 3 cut(s) 154, 505, 801
TaqI TCGA 3 cut(s) 210, 609, 927
TasI AATT 4 cut(s) 351, 517, 817, 1128
TatI WGTACW 1 cut(s) 554
TfiI GAWTC 3 cut(s) 342, 569, 731
Tru1I TTAA 6 cut(s) 407, 776, 875, 983, 1019, 1028
Tru9I TTAA 6 cut(s) 407, 776, 875, 983, 1019, 1028
TscAI CASTG 4 cut(s) 30, 133, 920, 1060
TseFI GTSAC 2 cut(s) 250, 521
TseI GCWGC 8 cut(s) 182, 441, 474, 633, 789, 900, 948, 968
Tsp45I GTSAC 2 cut(s) 250, 521
TspDTI ATGAA 3 cut(s) 191, 357, 669
TspGWI ACGGA 3 cut(s) 259, 347, 874
TspRI CASTG 4 cut(s) 30, 133, 920, 1060
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 817
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 3 cut(s) 169, 678, 1096
XhoI CTCGAG 1 cut(s) 926
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.