Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003823

Physical Location & Seq

Genomic Coordinates Reverse (-)

7996338 .. 7997505

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGTAAACGAAAACGTCCGGATCCGAAATCATCGGGAGGTGATCTAAACGAGCCACACGAGAAGAAGCTTCTGGATCTGATTCGAATAAACCAAGGAAGAGGCGCAACTATGTTCGAATTGAAACGCGAGAAAACGATCCCAGCAACTATAGTTACTCGATTGATCGCTTCTCTACGGAAGAAGAATCTCATCAAAGAAGTAGCAAACATGAACAACAAAGGTGTCAAACATTATCTTGCAATGGAGTTTGAGCCTTGTAGTGAACTTACTGGTGGTGAATGGTACACTGATGGAGCTCTTGACCTGTCGAAAATCGAAGATTTGAAAGCCAAGTGTGTGATGATTTTGGAGAGGCATAGGCAGAGGGTTGTTACTTTGGAGGTTTTGTGTGGGTATTTTGTTAAAGAGGAGAAGCTGAGTGTTGATCAGACTAAGGAGATACTTAAGAACTTGATTTTGGATAATTTGATCATGGAGGTGAAGAGTAATGGAATGAATGAGTTTGCTTCTACGAGAATCGGAGAAGTTTGCTACAGGTTGACCGGGAAAAAGTTCGGTAATGGCGAACCGAGAGCTGGAGCTTTTGCTTCGATTCCTTGCGGGGTTTGTCCGCATATAGCGATCTGTTCACCTGATGGTGTTATCTCTCCCACTACATGTGTTTATTTTCAGAAATGGTTAGACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc34

Protein Analysis

230

Amino Acids

25.88

Weight (kDa)

8.94

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc34	PF05158	26 - 119	5.5e-15	RNA polymerase Rpc34 subunit
RNA_pol_Rpc34	PF05158	135 - 229	7.2e-11	RNA polymerase Rpc34 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23710
fragaria_vesca	FvH4_6g29950 FvH4_6g29950 FvH4_6g41460
malus_domestica	MD08G1239800.v1.1 MD15G1431400.v1.1
prunus_persica	Prupe.1G576300_v2.0.a1 Prupe.5G067300_v2.0.a1
pyrus_communis	pycom08g20810 pycom15g38120
rosa_chinensis	RchiOBHm_Chr2g0135951 RchiOBHm_Chr6g0271261 RchiOBHm_Chr6g0271271
rosa_laevigata	RLG00000019491 RLG00000020962
rosa_multiflora	Rmu_sc0004866.1_g000010 Rmu_ssc0000343.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108750 Rroxscaffold_7G00200610
rosa_rugosa	Rorug02G0327000 Rorug02G0457600 Rorug06G0035800 Rorug06G0036000
rosa_samantha	Rh2BG385300 Rh2CG364400 Rh2DG401600 Rh6AG179300 Rh6BG182300 Rh6CG179200 Rh6DG170900
rosa_wichuraiana	Rw2G030860 Rw2G031070 Rw2G043270 Rw6G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	129
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	2 cut(s)	603, 614
AclWI	GGATC	4 cut(s)	17, 30, 84, 133
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	578
AflII	CTTAAG	1 cut(s)	446
AflIII	ACRYGT	1 cut(s)	659
AgsI	TTSAA	2 cut(s)	124, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	5 cut(s)	70, 299, 418, 578, 584
AluI	AGCT	5 cut(s)	70, 299, 418, 578, 584
Alw21I	GWGCWC	1 cut(s)	301
AlwI	GGATC	4 cut(s)	17, 30, 84, 133
Aor13HI	TCCGGA	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	4 cut(s)	53, 290, 493, 624
AsuII	TTCGAA	2 cut(s)	85, 117
BamHI	GGATCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	301
BauI	CACGAG	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	301
BccI	CCATC	2 cut(s)	287, 632
BclI	TGATCA	2 cut(s)	427, 471
BcnI	CCSGG	1 cut(s)	547
BfmI	CTRYAG	2 cut(s)	150, 535
BfrI	CTTAAG	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	547
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	600
Bpu14I	TTCGAA	2 cut(s)	85, 117
BpuMI	CCSGG	1 cut(s)	547
BsaJI	CCNNGG	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	249
BseAI	TCCGGA	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	425
BseYI	CCCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	20, 546
BslI	CCNNNNNNNGG	1 cut(s)	578
Bsp119I	TTCGAA	2 cut(s)	85, 117
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	8 cut(s)	22, 43, 76, 138, 165, 427, 471, 624
BspACI	CCGC	2 cut(s)	603, 614
BspCNI	CTCAG	1 cut(s)	411
BspEI	TCCGGA	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	24
BspPI	GGATC	4 cut(s)	17, 30, 84, 133
BspT104I	TTCGAA	2 cut(s)	85, 117
BspTI	CTTAAG	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	8 cut(s)	22, 43, 76, 138, 165, 427, 471, 624
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	59
Bst6I	CTCTTC	2 cut(s)	94, 479
BstAFI	CTTAAG	1 cut(s)	446
BstBI	TTCGAA	2 cut(s)	85, 117
BstDEI	CTNAG	2 cut(s)	419, 435
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	8 cut(s)	25, 46, 79, 141, 168, 430, 474, 627
BstMBI	GATC	8 cut(s)	22, 43, 76, 138, 165, 427, 471, 624
BstNSI	RCATGY	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	2 cut(s)	150, 535
BstUI	CGCG	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	22, 76
BstYI	RGATCY	2 cut(s)	22, 76
BtsIMutI	CAGTG	1 cut(s)	288
CfoI	GCGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	3 cut(s)	211, 475, 660
CviJI	RGCY	8 cut(s)	55, 70, 256, 299, 332, 418, 578, 584
CviKI_1	RGCY	8 cut(s)	55, 70, 256, 299, 332, 418, 578, 584
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	419, 435
DpnI	GATC	8 cut(s)	24, 45, 78, 140, 167, 429, 473, 626
DpnII	GATC	8 cut(s)	22, 43, 76, 138, 165, 427, 471, 624
Eam1104I	CTCTTC	2 cut(s)	94, 479
EarI	CTCTTC	2 cut(s)	94, 479
Ecl136II	GAGCTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	3 cut(s)	214, 478, 663
FaiI	YATR	8 cut(s)	113, 152, 212, 360, 476, 618, 620, 661
FatI	CATG	3 cut(s)	210, 474, 659
FauI	CCCGC	1 cut(s)	596
FbaI	TGATCA	2 cut(s)	427, 471
FriOI	GRGCYC	1 cut(s)	301
GlaI	GCGC	1 cut(s)	106
GsaI	CCCAGC	1 cut(s)	146
GsuI	CTGGAG	1 cut(s)	600
HapII	CCGG	2 cut(s)	20, 546
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	214, 478, 663
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	4 cut(s)	82, 187, 519, 595
HpaII	CCGG	2 cut(s)	20, 546
HphI	GGTGA	4 cut(s)	53, 290, 493, 624
Hpy166II	GTNNAC	5 cut(s)	8, 266, 288, 543, 632
Hpy188I	TCNGA	5 cut(s)	27, 81, 432, 524, 675
Hpy188III	TCNNGA	4 cut(s)	20, 36, 74, 302
Hpy8I	GTNNAC	5 cut(s)	8, 266, 288, 543, 632
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	242
HpyF3I	CTNAG	2 cut(s)	419, 435
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	3 cut(s)	214, 478, 663
HspAI	GCGC	1 cut(s)	105
Kpn2I	TCCGGA	1 cut(s)	19
Ksp22I	TGATCA	2 cut(s)	427, 471
Kzo9I	GATC	8 cut(s)	22, 43, 76, 138, 165, 427, 471, 624
LmnI	GCTCC	2 cut(s)	296, 581
LpnPI	CCDG	9 cut(s)	33, 59, 156, 258, 320, 523, 559, 564, 648
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	154, 373
MalI	GATC	8 cut(s)	24, 45, 78, 140, 167, 429, 473, 626
MboI	GATC	8 cut(s)	22, 43, 76, 138, 165, 427, 471, 624
MboII	GAAGA	6 cut(s)	76, 111, 193, 196, 332, 496
MflI	RGATCY	2 cut(s)	22, 76
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	2 cut(s)	119, 466
MnlI	CCTC	7 cut(s)	32, 95, 348, 360, 376, 403, 472
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	2 cut(s)	405, 447
MslI	CAYNNNNRTG	1 cut(s)	479
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	2 cut(s)	20, 546
MspR9I	CCNGG	1 cut(s)	547
MvnI	CGCG	1 cut(s)	129
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	8 cut(s)	22, 43, 76, 138, 165, 427, 471, 624
NlaIII	CATG	3 cut(s)	214, 478, 663
NlaIV	GGNNCC	1 cut(s)	24
NspI	RCATGY	1 cut(s)	663
NspV	TTCGAA	2 cut(s)	85, 117
PciI	ACATGT	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 564
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	4 cut(s)	82, 187, 519, 595
PscI	ACATGT	1 cut(s)	659
Psp124BI	GAGCTC	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	22, 76
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	479
SacI	GAGCTC	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	405, 447
Sau3AI	GATC	8 cut(s)	22, 43, 76, 138, 165, 427, 471, 624
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	1 cut(s)	301
SfcI	CTRYAG	2 cut(s)	150, 535
SfuI	TTCGAA	2 cut(s)	85, 117
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	2 cut(s)	119, 466
SsiI	CCGC	2 cut(s)	603, 614
SstI	GAGCTC	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	6 cut(s)	85, 117, 160, 311, 318, 593
TasI	AATT	2 cut(s)	119, 466
TfiI	GAWTC	4 cut(s)	82, 187, 519, 595
Tru1I	TTAA	2 cut(s)	405, 447
Tru9I	TTAA	2 cut(s)	405, 447
TscAI	CASTG	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	227, 512
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	295
Vha464I	CTTAAG	1 cut(s)	446
XceI	RCATGY	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.