Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003823

Physical Location & Seq

Genomic Coordinates Reverse (-)

46930765 .. 46934780

Gene Structure 4016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G576300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGCAGACCTTCAGCACTCAAACGGAAACAGCCAGACTCTAATTCCCCGTCGGAGTCTTTGACAGAGCACGAGAAAATCGTATATAATGTGATCCGAAGCAAGCAAGATATGGGAATTTGGACACGAGACATGAAGAAGGAAGCGAACCTCCCTGACAATCTGGTTGGCAAATCCATAAAATCACTCCAAGCCAAGAACCTGATAAAAGAGGTTGTAAATGTCCAAAGCAAGGGGAGAAAGCATTATATGGCTTCAGAGTTTGAGCCCTCCAAGGAGTTAACCGGTGGGGATTGGTATTCTAATGGGACCCTCGATAAATATTACATAACCTGTGTAAAAGACGGGTTTGCAAAGATCATATATCAGCTCAAGGTTGCTACCTTGGAGGGAATTTCTGATGAAGTTAAAAAGAGTGGAATATTCAAAACTTCGTTCACAAGACCGCAAATTGAGGAGATTCTGAGGGTTCTGGTTTTGGACAAACGGGTCACGGAGGTGAAGAGCACTGGGATGGGGGAGTTTGCTTCATTTCCAGTTGGGAAAGTTTGCTATAAATCCATAAGCAAGGGAGGTACTAAACGGGAACCCAAAGTAGGGGCCATGGCTTCCATTCCATGTGGAGTTTGTCCGCGGATAAGTCAATGTACGCCAGATGGTATTATTTCCCCAAGGACGTGTGTCTACTTCACCAAATGGTTGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0008150 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc34

Protein Analysis

237

Amino Acids

26.43

Weight (kDa)

9.43

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23710
fragaria_vesca	FvH4_6g29950 FvH4_6g29950 FvH4_6g41460
malus_domestica	MD08G1239800.v1.1 MD15G1431400.v1.1
prunus_persica	Prupe.1G576300_v2.0.a1 Prupe.5G067300_v2.0.a1
pyrus_communis	pycom08g20810 pycom15g38120
rosa_chinensis	RchiOBHm_Chr2g0135951 RchiOBHm_Chr6g0271261 RchiOBHm_Chr6g0271271
rosa_laevigata	RLG00000019491 RLG00000020962
rosa_multiflora	Rmu_sc0004866.1_g000010 Rmu_ssc0000343.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108750 Rroxscaffold_7G00200610
rosa_rugosa	Rorug02G0327000 Rorug02G0457600 Rorug06G0035800 Rorug06G0036000
rosa_samantha	Rh2BG385300 Rh2CG364400 Rh2DG401600 Rh6AG179300 Rh6BG182300 Rh6CG179200 Rh6DG170900
rosa_wichuraiana	Rw2G030860 Rw2G031070 Rw2G043270 Rw6G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	684
AccII	CGCG	1 cut(s)	634
AciI	CCGC	3 cut(s)	446, 632, 634
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	117, 393
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	577, 649
AfiI	CCNNNNNNNGG	3 cut(s)	232, 596, 597
AflIII	ACRYGT	1 cut(s)	677
AgeI	ACCGGT	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	427
AjiI	CACGTC	1 cut(s)	678
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw21I	GWGCWC	2 cut(s)	72, 509
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	88
AoxI	GGCC	1 cut(s)	600
ApoI	RAATTY	2 cut(s)	117, 393
AsiGI	ACCGGT	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	309, 600
AsuHPI	GGTGA	2 cut(s)	511, 682
AvaII	GGWCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	2 cut(s)	71, 126
Bbv12I	GWGCWC	2 cut(s)	72, 509
BccI	CCATC	2 cut(s)	508, 650
BcoDI	GTCTC	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	309
BmgBI	CACGTC	1 cut(s)	678
BmgT120I	GGNCC	2 cut(s)	309, 600
BmiI	GGNNCC	4 cut(s)	310, 311, 588, 601
BmrI	ACTGGG	1 cut(s)	519
BmuI	ACTGGG	1 cut(s)	519
BoxI	GACNNNNGTC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	356
BsaJI	CCNNGG	5 cut(s)	273, 384, 603, 632, 671
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 596, 597
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	514, 536
BseDI	CCNNGG	5 cut(s)	273, 384, 603, 632, 671
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	3 cut(s)	232, 596, 597
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	2 cut(s)	514, 536
BseRI	GAGGAG	1 cut(s)	470
Bsh1236I	CGCG	1 cut(s)	634
BshFI	GGCC	1 cut(s)	602
BshTI	ACCGGT	1 cut(s)	284
BsiHKAI	GWGCWC	2 cut(s)	72, 509
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	232, 596, 597
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	602
Bsp1286I	GDGCHC	3 cut(s)	72, 270, 509
Bsp143I	GATC	2 cut(s)	93, 357
Bsp19I	CCATGG	1 cut(s)	603
BspACI	CCGC	3 cut(s)	446, 632, 634
BspANI	GGCC	1 cut(s)	602
BspCNI	CTCAG	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	634
BspLI	GGNNCC	4 cut(s)	310, 311, 588, 601
BspPI	GGATC	1 cut(s)	88
BspQI	GCTCTTC	1 cut(s)	497
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	514, 536
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	5 cut(s)	273, 384, 603, 632, 671
BssMI	GATC	2 cut(s)	93, 357
BssSI	CACGAG	2 cut(s)	71, 126
BssT1I	CCWWGG	4 cut(s)	273, 384, 603, 671
Bst2BI	CACGAG	2 cut(s)	71, 126
Bst6I	CTCTTC	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	464
BstDSI	CCRYGG	2 cut(s)	603, 632
BstF5I	GGATG	1 cut(s)	519
BstFNI	CGCG	1 cut(s)	634
BstKTI	GATC	2 cut(s)	96, 360
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	93, 357
BstPAI	GACNNNNGTC	1 cut(s)	680
BstUI	CGCG	1 cut(s)	634
BstXI	CCANNNNNNTGG	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	602
BtgI	CCRYGG	2 cut(s)	603, 632
BtrI	CACGTC	1 cut(s)	678
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	309, 600
Cfr42I	CCGCGG	1 cut(s)	635
Csp6I	GTAC	2 cut(s)	576, 648
CspAI	ACCGGT	1 cut(s)	284
CviAII	CATG	3 cut(s)	133, 604, 618
CviJI	RGCY	7 cut(s)	34, 194, 254, 268, 370, 602, 608
CviKI_1	RGCY	7 cut(s)	34, 194, 254, 268, 370, 602, 608
CviQI	GTAC	2 cut(s)	576, 648
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	2 cut(s)	95, 359
DpnII	GATC	2 cut(s)	93, 357
DrdI	GACNNNNNNGTC	1 cut(s)	488
DseDI	GACNNNNNNGTC	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	4 cut(s)	273, 384, 603, 671
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	309
EcoT14I	CCWWGG	4 cut(s)	273, 384, 603, 671
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	4 cut(s)	273, 384, 603, 671
FaeI	CATG	3 cut(s)	136, 607, 621
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	132, 603, 617
FblI	GTMKAC	1 cut(s)	684
FokI	GGATG	1 cut(s)	526
FriOI	GRGCYC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	602
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	3 cut(s)	136, 607, 621
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	3 cut(s)	38, 56, 460
HpaI	GTTAAC	1 cut(s)	282
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	511, 682
Hpy166II	GTNNAC	3 cut(s)	282, 438, 685
Hpy188I	TCNGA	6 cut(s)	55, 98, 259, 400, 465, 710
Hpy8I	GTNNAC	3 cut(s)	282, 438, 685
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	21, 133
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	464
HpySE526I	ACGT	1 cut(s)	677
Hsp92II	CATG	3 cut(s)	136, 607, 621
KflI	GGGWCCC	1 cut(s)	309
KspAI	GTTAAC	1 cut(s)	282
KspI	CCGCGG	1 cut(s)	635
Kzo9I	GATC	2 cut(s)	93, 357
LguI	GCTCTTC	1 cut(s)	497
MaeII	ACGT	1 cut(s)	677
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	2 cut(s)	95, 359
MboI	GATC	2 cut(s)	93, 357
MboII	GAAGA	2 cut(s)	148, 514
MhlI	GDGCHC	3 cut(s)	72, 270, 509
MluCI	AATT	4 cut(s)	43, 117, 393, 450
MlyI	GAGTC	2 cut(s)	32, 65
MmeI	TCCRAC	2 cut(s)	33, 681
MnlI	CCTC	9 cut(s)	161, 205, 280, 323, 382, 448, 459, 490, 566
MseI	TTAA	2 cut(s)	281, 408
MslI	CAYNNNNRTG	2 cut(s)	497, 512
MspA1I	CMGCKG	1 cut(s)	634
MspI	CCGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	634
NcoI	CCATGG	1 cut(s)	603
NdeII	GATC	2 cut(s)	93, 357
NlaIII	CATG	3 cut(s)	136, 607, 621
NlaIV	GGNNCC	4 cut(s)	310, 311, 588, 601
NmuCI	GTSAC	1 cut(s)	490
OliI	CACNNNNGTG	1 cut(s)	497
PciSI	GCTCTTC	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	460
PinAI	ACCGGT	1 cut(s)	284
PleI	GAGTC	2 cut(s)	32, 64
PpsI	GAGTC	2 cut(s)	32, 64
PpuMI	RGGWCCY	1 cut(s)	309
PshAI	GACNNNNGTC	1 cut(s)	680
Psp5II	RGGWCCY	1 cut(s)	309
PspN4I	GGNNCC	4 cut(s)	310, 311, 588, 601
PspPI	GGNCC	2 cut(s)	309, 600
PspPPI	RGGWCCY	1 cut(s)	309
RsaI	GTAC	2 cut(s)	577, 649
RsaNI	GTAC	2 cut(s)	576, 648
RseI	CAYNNNNRTG	2 cut(s)	497, 512
SacII	CCGCGG	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	497
SaqAI	TTAA	2 cut(s)	281, 408
Sau3AI	GATC	2 cut(s)	93, 357
Sau96I	GGNCC	2 cut(s)	309, 600
SchI	GAGTC	2 cut(s)	32, 65
SduI	GDGCHC	3 cut(s)	72, 270, 509
Sfr303I	CCGCGG	1 cut(s)	635
SgrBI	CCGCGG	1 cut(s)	635
SinI	GGWCC	1 cut(s)	309
SmiMI	CAYNNNNRTG	2 cut(s)	497, 512
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	4 cut(s)	43, 117, 393, 450
SsiI	CCGC	3 cut(s)	446, 632, 634
SspI	AATATT	2 cut(s)	323, 423
StyI	CCWWGG	4 cut(s)	273, 384, 603, 671
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	1 cut(s)	315
TasI	AATT	4 cut(s)	43, 117, 393, 450
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	2 cut(s)	281, 408
Tru9I	TTAA	2 cut(s)	281, 408
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	3 cut(s)	149, 417, 519
TspGWI	ACGGA	2 cut(s)	40, 509
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	309
XapI	RAATTY	2 cut(s)	117, 393
XmiI	GTMKAC	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.