Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003823

Physical Location & Seq

Genomic Coordinates Reverse (-)

53126852 .. 53128372

Gene Structure 1521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1431400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGGATTTGGACACGAGACATGAAGAAAGAGACAAACCTCCCTGACAAGGTGTTTAACGCAGCCTTAAAAACACTTCAAGCAAAGAAACTGATACAAGAGGTTGTAAATGTCCAAAGCAAGGGGAGAAAGCATTACATTGCTACAGAATTTGAGCCCTCCAAGGAGTTAACCGGTGGGGCTTGGTACTCGGAGGGGAAACTCGACAAAGATTATATAAACCTTGTAAAAGATCAGTTTGCGAAGATGATATATCAGCAGAAGGTTGCGACGTTGGAGGGAATTGCAGACGCAATCAGAAAGACTAAAATATTCAAGACCGAGTTTACAAAACAGCAAACGGAGGAGATTGTGAGGGATTTGGTTTTGGACAATCGAGTCATGGAGGTGAAGAGCACCGGGATGGGGGAGTTTGCTTCGATTCAAATTGGAAAAGTTTGCTATAAATGCAAAAGCAAGGGAGGTACTAGAGGAGAAACCAAAGTTGGCGCAATGGCTTCTATTCCATGTGGAGTTTGTCCGCGGATAAGTCAATGTACACCGGATGGGATTATTTCCCCATCAACCTGTGTCTACTTCGCCAAATGGTTGGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0008150 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc34

Protein Analysis

200

Amino Acids

22.33

Weight (kDa)

9.21

Isoelectric Point (pI)

22.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc34	PF05158	2 - 89	4.4e-24	RNA polymerase Rpc34 subunit
RNA_pol_Rpc34	PF05158	87 - 198	1.2e-13	RNA polymerase Rpc34 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23710
fragaria_vesca	FvH4_6g29950 FvH4_6g29950 FvH4_6g41460
malus_domestica	MD08G1239800.v1.1 MD15G1431400.v1.1
prunus_persica	Prupe.1G576300_v2.0.a1 Prupe.5G067300_v2.0.a1
pyrus_communis	pycom08g20810 pycom15g38120
rosa_chinensis	RchiOBHm_Chr2g0135951 RchiOBHm_Chr6g0271261 RchiOBHm_Chr6g0271271
rosa_laevigata	RLG00000019491 RLG00000020962
rosa_multiflora	Rmu_sc0004866.1_g000010 Rmu_ssc0000343.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108750 Rroxscaffold_7G00200610
rosa_rugosa	Rorug02G0327000 Rorug02G0457600 Rorug06G0035800 Rorug06G0036000
rosa_samantha	Rh2BG385300 Rh2CG364400 Rh2DG401600 Rh6AG179300 Rh6BG182300 Rh6CG179200 Rh6DG170900
rosa_wichuraiana	Rw2G030860 Rw2G031070 Rw2G043270 Rw6G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	1 cut(s)	523
AciI	CCGC	2 cut(s)	521, 523
AcsI	RAATTY	1 cut(s)	149
AfaI	GTAC	3 cut(s)	188, 466, 538
AfiI	CCNNNNNNNGG	3 cut(s)	49, 121, 405
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	80, 316, 425
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	2 cut(s)	12, 26
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	149
AsiGI	ACCGGT	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	491
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	3 cut(s)	397, 539, 568
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	12, 26
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	400
BpuMI	CCSGG	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	162, 521
BsaWI	WCCGGW	2 cut(s)	173, 541
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 121, 405
Bse118I	RCCGGY	1 cut(s)	173
Bse3DI	GCAATG	2 cut(s)	138, 498
BseDI	CCNNGG	2 cut(s)	162, 521
BseGI	GGATG	2 cut(s)	408, 550
BseLI	CCNNNNNNNGG	3 cut(s)	49, 121, 405
BseMI	GCAATG	2 cut(s)	138, 498
BseRI	GAGGAG	2 cut(s)	359, 486
BseXI	GCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	523
BshTI	ACCGGT	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	3 cut(s)	174, 399, 542
BslI	CCNNNNNNNGG	3 cut(s)	49, 121, 405
BsmAI	GTCTC	2 cut(s)	12, 26
Bsp1286I	GDGCHC	2 cut(s)	159, 398
Bsp1407I	TGTACA	1 cut(s)	536
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	2 cut(s)	521, 523
BspFNI	CGCG	1 cut(s)	523
BspQI	GCTCTTC	1 cut(s)	386
BsrDI	GCAATG	2 cut(s)	138, 498
BsrFI	RCCGGY	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	536
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	162, 521
BssMI	GATC	1 cut(s)	232
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	386
BstAUI	TGTACA	1 cut(s)	536
BstDSI	CCRYGG	1 cut(s)	521
BstF5I	GGATG	2 cut(s)	408, 550
BstFNI	CGCG	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	2 cut(s)	12, 26
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	1 cut(s)	74
BstXI	CCANNNNNNTGG	1 cut(s)	589
BtgI	CCRYGG	1 cut(s)	521
BtsCI	GGATG	2 cut(s)	408, 550
CfoI	GCGC	1 cut(s)	491
Cfr10I	RCCGGY	1 cut(s)	173
Cfr42I	CCGCGG	1 cut(s)	524
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	3 cut(s)	187, 465, 537
CspAI	ACCGGT	1 cut(s)	173
CviAII	CATG	3 cut(s)	22, 382, 507
CviJI	RGCY	4 cut(s)	65, 157, 182, 497
CviKI_1	RGCY	4 cut(s)	65, 157, 182, 497
CviQI	GTAC	3 cut(s)	187, 465, 537
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	3 cut(s)	25, 385, 510
FaiI	YATR	7 cut(s)	23, 216, 218, 253, 383, 444, 508
FatI	CATG	3 cut(s)	21, 381, 506
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	415, 557
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	1 cut(s)	63
HapII	CCGG	3 cut(s)	174, 399, 542
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	491
Hin1II	CATG	3 cut(s)	25, 385, 510
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HinfI	GANTC	2 cut(s)	378, 421
HpaI	GTTAAC	1 cut(s)	171
HpaII	CCGG	3 cut(s)	174, 399, 542
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	4 cut(s)	171, 327, 539, 574
Hpy188I	TCNGA	3 cut(s)	193, 299, 599
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	4 cut(s)	171, 327, 539, 574
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	2 cut(s)	287, 450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	3 cut(s)	25, 385, 510
HspAI	GCGC	1 cut(s)	489
KspAI	GTTAAC	1 cut(s)	171
KspI	CCGCGG	1 cut(s)	524
Kzo9I	GATC	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	386
LpnPI	CCDG	5 cut(s)	57, 187, 412, 555, 580
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	272
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	37, 256, 403
MhlI	GDGCHC	2 cut(s)	159, 398
MluCI	AATT	3 cut(s)	149, 282, 426
MlyI	GAGTC	1 cut(s)	387
MmeI	TCCRAC	2 cut(s)	255, 570
MseI	TTAA	3 cut(s)	57, 68, 170
MslI	CAYNNNNRTG	2 cut(s)	386, 401
MspA1I	CMGCKG	1 cut(s)	523
MspI	CCGG	3 cut(s)	174, 399, 542
MspR9I	CCNGG	1 cut(s)	400
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	3 cut(s)	25, 385, 510
PciSI	GCTCTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	421
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
RsaI	GTAC	3 cut(s)	188, 466, 538
RsaNI	GTAC	3 cut(s)	187, 465, 537
RseI	CAYNNNNRTG	2 cut(s)	386, 401
SacII	CCGCGG	1 cut(s)	524
SapI	GCTCTTC	1 cut(s)	386
SaqAI	TTAA	3 cut(s)	57, 68, 170
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	2 cut(s)	159, 398
SetI	ASST	9 cut(s)	42, 54, 105, 225, 267, 275, 390, 466, 569
SfcI	CTRYAG	1 cut(s)	144
Sfr303I	CCGCGG	1 cut(s)	524
SgrBI	CCGCGG	1 cut(s)	524
SmiMI	CAYNNNNRTG	2 cut(s)	386, 401
Sse9I	AATT	3 cut(s)	149, 282, 426
SsiI	CCGC	2 cut(s)	521, 523
SspI	AATATT	1 cut(s)	312
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	162
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	3 cut(s)	204, 376, 419
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	3 cut(s)	149, 282, 426
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	3 cut(s)	57, 68, 170
Tru9I	TTAA	3 cut(s)	57, 68, 170
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	356
XapI	RAATTY	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.