Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003823

Physical Location & Seq

Genomic Coordinates Forward (+)

23153283 .. 23155827

Gene Structure 2545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGCAGATCACAACAGCCTTCAGCCCTTAAACGGAAGCGCTTGGACTCGCAGTCTGGGTCTTTGACAGAGCATGAAAGCAAACTCTATGATGCCATCCGCAGCAAGACAGATATGGGCATGTCTGTACAAGACTTGAGGCGTGAAACAGGACTTCAGACCAATTTATTTACCAAGGCCATCAAAACACTTCAAGCCAAACAACTGATAAAAGAGGTTAAAAATTTTGATAACAAGACAAGGAAGCATTACATGGCTACAGAGTTTGAGCCCTCAAAGGAGATAACCGGTGGTGCTTGGTATGATAATGGACAGTTTGATACTGATTTTATAAAGGTCGTAAAAAGAGAGTTGGTGAAGGTCATTTATGATCAGAAGATTGCTACCTTGGAGGGAATTTCAAATGCAATTAGTAAGAAAAAGTTTTTAACTGTTAACTTATCCACACAGGAATTAAAGCAGATTCTGGAGGCTTTGGTTTTGGACAATGAGGTCCTGAAGGTGGTGAGCACTGGGATGGGGGAGTTTGTTGGTATCAAAGCTGGCAAAGACTGTTATAAGTGCTGCAAGAGAGGTGTTAGAGGGGAACCGAACTTGGCGTCCATGGCTTCCATTCCATGTGGAGTCTGTCCGCGTATTAATCAATGTACCCCAGATGGCATTATTTCCCCAATCACTTGTGAATACTTCAAGAAATGGTTGGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0008150 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc34

Protein Analysis

237

Amino Acids

26.6

Weight (kDa)

9.21

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc34	PF05158	18 - 124	2.8e-28	RNA polymerase Rpc34 subunit
RNA_pol_Rpc34	PF05158	126 - 235	3.3e-13	RNA polymerase Rpc34 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23710
fragaria_vesca	FvH4_6g29950 FvH4_6g29950 FvH4_6g41460
malus_domestica	MD08G1239800.v1.1 MD15G1431400.v1.1
prunus_persica	Prupe.1G576300_v2.0.a1 Prupe.5G067300_v2.0.a1
pyrus_communis	pycom08g20810 pycom15g38120
rosa_chinensis	RchiOBHm_Chr2g0135951 RchiOBHm_Chr6g0271261 RchiOBHm_Chr6g0271271
rosa_laevigata	RLG00000019491 RLG00000020962
rosa_multiflora	Rmu_sc0004866.1_g000010 Rmu_ssc0000343.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108750 Rroxscaffold_7G00200610
rosa_rugosa	Rorug02G0327000 Rorug02G0457600 Rorug06G0035800 Rorug06G0036000
rosa_samantha	Rh2BG385300 Rh2CG364400 Rh2DG401600 Rh6AG179300 Rh6BG182300 Rh6CG179200 Rh6DG170900
rosa_wichuraiana	Rw2G030860 Rw2G031070 Rw2G043270 Rw6G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	332, 558
AasI	GACNNNNNNGTC	1 cut(s)	491
AccII	CGCG	1 cut(s)	634
AciI	CCGC	2 cut(s)	100, 632
AcsI	RAATTY	2 cut(s)	223, 396
AcuI	CTGAAG	3 cut(s)	6, 140, 518
AcyI	GRCGYC	1 cut(s)	599
AfaI	GTAC	2 cut(s)	129, 649
AfeI	AGCGCT	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	33, 502
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	194, 402, 691
AhdI	GACNNNNNGTC	1 cut(s)	52
AloI	GAACNNNNNNTCC	2 cut(s)	584, 616
AluBI	AGCT	1 cut(s)	542
AluI	AGCT	1 cut(s)	542
Alw21I	GWGCWC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	466
Aor51HI	AGCGCT	1 cut(s)	41
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	102, 564
ApoI	RAATTY	2 cut(s)	223, 396
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
AseI	ATTAAT	1 cut(s)	639
AsiGI	ACCGGT	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	2 cut(s)	367, 517
AvaII	GGWCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	114, 551
BccI	CCATC	4 cut(s)	104, 188, 511, 650
BclI	TGATCA	1 cut(s)	370
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	43
BisI	GCNGC	2 cut(s)	103, 565
BlsI	GCNGC	2 cut(s)	104, 566
Bme18I	GGWCC	1 cut(s)	493
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	588
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	599
BsaJI	CCNNGG	3 cut(s)	174, 387, 603
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 502
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	517
BseDI	CCNNGG	3 cut(s)	174, 387, 603
BseGI	GGATG	2 cut(s)	96, 522
BseLI	CCNNNNNNNGG	2 cut(s)	33, 502
BseNI	ACTGG	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	114, 551
Bsh1236I	CGCG	1 cut(s)	634
BshFI	GGCC	1 cut(s)	179
BshTI	ACCGGT	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	512
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	33, 502
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	273, 512
Bsp1407I	TGTACA	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	8, 370
Bsp19I	CCATGG	1 cut(s)	603
BspACI	CCGC	2 cut(s)	100, 632
BspANI	GGCC	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	174, 387, 603
BssMI	GATC	2 cut(s)	8, 370
BssNI	GRCGYC	1 cut(s)	599
BssT1I	CCWWGG	3 cut(s)	174, 387, 603
Bst4CI	ACNGT	3 cut(s)	315, 433, 554
BstACI	GRCGYC	1 cut(s)	599
BstAUI	TGTACA	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	544
BstDSI	CCRYGG	1 cut(s)	603
BstF5I	GGATG	2 cut(s)	96, 522
BstFNI	CGCG	1 cut(s)	634
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	2 cut(s)	11, 373
BstMBI	GATC	2 cut(s)	8, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNSI	RCATGY	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	634
BstV1I	GCAGC	2 cut(s)	114, 551
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	96, 522
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	544
CaiI	CAGNNNCTG	1 cut(s)	466
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	493
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	2 cut(s)	128, 648
CspAI	ACCGGT	1 cut(s)	287
CviAII	CATG	5 cut(s)	74, 121, 253, 604, 618
CviJI	RGCY	9 cut(s)	19, 26, 179, 197, 257, 271, 473, 542, 608
CviKI_1	RGCY	9 cut(s)	19, 26, 179, 197, 257, 271, 473, 542, 608
CviQI	GTAC	2 cut(s)	128, 648
DpnI	GATC	2 cut(s)	10, 372
DpnII	GATC	2 cut(s)	8, 370
DrdI	GACNNNNNNGTC	1 cut(s)	491
DriI	GACNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	491
Eam1105I	GACNNNNNGTC	1 cut(s)	52
Eco130I	CCWWGG	3 cut(s)	174, 387, 603
Eco24I	GRGCYC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	493
Eco47III	AGCGCT	1 cut(s)	41
Eco57I	CTGAAG	3 cut(s)	6, 140, 518
EcoO109I	RGGNCCY	1 cut(s)	493
EcoT14I	CCWWGG	3 cut(s)	174, 387, 603
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	3 cut(s)	174, 387, 603
FaeI	CATG	5 cut(s)	77, 124, 256, 607, 621
FatI	CATG	5 cut(s)	73, 120, 252, 603, 617
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	103, 565
FokI	GGATG	2 cut(s)	83, 529
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	2 cut(s)	103, 565
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	2 cut(s)	103, 565
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	588
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	599
Hin1II	CATG	5 cut(s)	77, 124, 256, 607, 621
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	3 cut(s)	47, 463, 624
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	367, 517
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	3 cut(s)	159, 375, 710
Hpy188III	TCNNGA	3 cut(s)	467, 496, 691
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	3 cut(s)	30, 352, 493
HpyCH4III	ACNGT	3 cut(s)	315, 433, 554
HpyCH4V	TGCA	2 cut(s)	407, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
Hsp92I	GRCGYC	1 cut(s)	599
Hsp92II	CATG	5 cut(s)	77, 124, 256, 607, 621
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	8, 370
LpnPI	CCDG	9 cut(s)	42, 135, 301, 434, 452, 498, 509, 528, 666
Lsp1109I	GCAGC	2 cut(s)	114, 551
LweI	GCATC	1 cut(s)	82
MalI	GATC	2 cut(s)	10, 372
MboI	GATC	2 cut(s)	8, 370
MboII	GAAGA	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	273, 512
MluCI	AATT	5 cut(s)	163, 223, 396, 408, 452
MlyI	GAGTC	2 cut(s)	41, 633
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	8 cut(s)	132, 208, 283, 385, 463, 484, 566, 575
MseI	TTAA	6 cut(s)	30, 219, 428, 435, 455, 639
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	634
MwoI	GCNNNNNNNGC	1 cut(s)	605
NcoI	CCATGG	1 cut(s)	603
NdeII	GATC	2 cut(s)	8, 370
NlaIII	CATG	5 cut(s)	77, 124, 256, 607, 621
NlaIV	GGNNCC	1 cut(s)	588
NspI	RCATGY	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	463
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	104, 566
PleI	GAGTC	2 cut(s)	41, 632
PpsI	GAGTC	2 cut(s)	41, 632
PpuMI	RGGWCCY	1 cut(s)	493
PshBI	ATTAAT	1 cut(s)	639
PsiI	TTATAA	2 cut(s)	332, 558
Psp5II	RGGWCCY	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	588
PspPI	GGNCC	1 cut(s)	493
PspPPI	RGGWCCY	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	466
RsaI	GTAC	2 cut(s)	129, 649
RsaNI	GTAC	2 cut(s)	128, 648
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	6 cut(s)	30, 219, 428, 435, 455, 639
SatI	GCNGC	2 cut(s)	103, 565
Sau3AI	GATC	2 cut(s)	8, 370
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	2 cut(s)	41, 633
SduI	GDGCHC	2 cut(s)	273, 512
SetI	ASST	8 cut(s)	219, 339, 363, 389, 495, 504, 544, 577
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	5 cut(s)	163, 223, 396, 408, 452
SsiI	CCGC	2 cut(s)	100, 632
StyI	CCWWGG	3 cut(s)	174, 387, 603
TaaI	ACNGT	3 cut(s)	315, 433, 554
TasI	AATT	5 cut(s)	163, 223, 396, 408, 452
TatI	WGTACW	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	6 cut(s)	30, 219, 428, 435, 455, 639
Tru9I	TTAA	6 cut(s)	30, 219, 428, 435, 455, 639
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	2 cut(s)	102, 564
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	493
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	2 cut(s)	223, 396
XceI	RCATGY	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.