Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003823

Physical Location & Seq

Genomic Coordinates Forward (+)

8155474 .. 8157539

Gene Structure 2066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G067300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGCAGACCTTCAGCACTCAAACGGAAACAGCCAGACTCTAGTTCTCCGTCGGAGTCTTTGACAGAGCATGAGAAAATCGTATATAGTGTAATCCGAAGCAAGCAAGATATGGGAATTTGGACACGAGACATGAAGAAAGAAGCGAACCTCCCCGACAATCTGGTTGGCAAATCCATAAAATCACTCCAAGCCAAGAACCTGATAAAAGAGGTTGTGAATGTCCAAAGCAAGGGGAGAAAGCATTATATGGCTGCAGAGTTTGAGCCCTCCAAGGAGTTAACTGGCGGGGATTGGTATTCTAATGGGACCCTCGATAAATATTACATATCCTGTGTAAAAGATGGGTTTGCAAAGATCATATATCAGCTCAAGGTTGCTACCTTGGAGGGAATTTCAGATGAAGTTAAAAAGAGCGGAATATTCAAAACTTCGTTCACAAAACAGCAAATTGAGGAGATTTTGAGGGTTTTGGTTTTGGACAAACGGGTCACGGAAGTGAAGAGCACTGGGATGGGGGAGTTTGGTTCGTTTCCAGTTGGGAAAGTTTGCTATAAATCCACAAGCAAGGGAGGTAGCAAACGGGAACCCAAAGTAGGGGCCATGGCTTCCATTCCATGTGGGGTTTGTCCACGGATAAGTCAATGTACACCAGATGGTATTATTTCCCCAAGGACTTGTGTCTACTTCACCAAATGGTTGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0008150 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc34

Protein Analysis

237

Amino Acids

26.31

Weight (kDa)

9.42

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23710
fragaria_vesca	FvH4_6g29950 FvH4_6g29950 FvH4_6g41460
malus_domestica	MD08G1239800.v1.1 MD15G1431400.v1.1
prunus_persica	Prupe.1G576300_v2.0.a1 Prupe.5G067300_v2.0.a1
pyrus_communis	pycom08g20810 pycom15g38120
rosa_chinensis	RchiOBHm_Chr2g0135951 RchiOBHm_Chr6g0271261 RchiOBHm_Chr6g0271271
rosa_laevigata	RLG00000019491 RLG00000020962
rosa_multiflora	Rmu_sc0004866.1_g000010 Rmu_ssc0000343.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108750 Rroxscaffold_7G00200610
rosa_rugosa	Rorug02G0327000 Rorug02G0457600 Rorug06G0035800 Rorug06G0036000
rosa_samantha	Rh2BG385300 Rh2CG364400 Rh2DG401600 Rh6AG179300 Rh6BG182300 Rh6CG179200 Rh6DG170900
rosa_wichuraiana	Rw2G030860 Rw2G031070 Rw2G043270 Rw6G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	684
AciI	CCGC	2 cut(s)	288, 417
AcsI	RAATTY	2 cut(s)	117, 393
AfaI	GTAC	1 cut(s)	649
AfiI	CCNNNNNNNGG	3 cut(s)	232, 596, 597
AgsI	TTSAA	1 cut(s)	427
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	600
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	117, 393
AspS9I	GGNCC	2 cut(s)	309, 600
AsuHPI	GGTGA	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	3 cut(s)	338, 508, 650
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	309
BmgT120I	GGNCC	2 cut(s)	309, 600
BmiI	GGNNCC	4 cut(s)	310, 311, 588, 601
BmrI	ACTGGG	1 cut(s)	519
BmuI	ACTGGG	1 cut(s)	519
BoxI	GACNNNNGTC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	356
BsaJI	CCNNGG	5 cut(s)	273, 384, 603, 632, 671
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 596, 597
Bse1I	ACTGG	3 cut(s)	289, 514, 536
BseDI	CCNNGG	5 cut(s)	273, 384, 603, 632, 671
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	3 cut(s)	232, 596, 597
BseNI	ACTGG	3 cut(s)	289, 514, 536
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	602
BsiHKAI	GWGCWC	1 cut(s)	509
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	232, 596, 597
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	270, 509
Bsp1407I	TGTACA	1 cut(s)	647
Bsp143I	GATC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	603
BspACI	CCGC	2 cut(s)	288, 417
BspANI	GGCC	1 cut(s)	602
BspLI	GGNNCC	4 cut(s)	310, 311, 588, 601
BspMAI	CTGCAG	1 cut(s)	259
BspQI	GCTCTTC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	417
BsrGI	TGTACA	1 cut(s)	647
BsrI	ACTGG	3 cut(s)	289, 514, 536
BssECI	CCNNGG	5 cut(s)	273, 384, 603, 632, 671
BssMI	GATC	1 cut(s)	357
BssSI	CACGAG	1 cut(s)	126
BssT1I	CCWWGG	4 cut(s)	273, 384, 603, 671
Bst2BI	CACGAG	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	104
BstDSI	CCRYGG	2 cut(s)	603, 632
BstF5I	GGATG	1 cut(s)	519
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	357
BstPAI	GACNNNNGTC	1 cut(s)	680
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	602
BtgI	CCRYGG	2 cut(s)	603, 632
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	309, 600
Csp6I	GTAC	1 cut(s)	648
CviAII	CATG	4 cut(s)	71, 133, 604, 618
CviJI	RGCY	7 cut(s)	34, 194, 254, 268, 370, 602, 608
CviKI_1	RGCY	7 cut(s)	34, 194, 254, 268, 370, 602, 608
CviQI	GTAC	1 cut(s)	648
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
DrdI	GACNNNNNNGTC	1 cut(s)	488
DseDI	GACNNNNNNGTC	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	4 cut(s)	273, 384, 603, 671
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	309
EcoT14I	CCWWGG	4 cut(s)	273, 384, 603, 671
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	4 cut(s)	273, 384, 603, 671
FaeI	CATG	4 cut(s)	74, 136, 607, 621
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	4 cut(s)	70, 132, 603, 617
FauI	CCCGC	1 cut(s)	281
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	526
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	602
Hin1II	CATG	4 cut(s)	74, 136, 607, 621
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	38, 56
HpaI	GTTAAC	1 cut(s)	282
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	5 cut(s)	282, 438, 632, 650, 685
Hpy188I	TCNGA	4 cut(s)	55, 98, 400, 710
Hpy8I	GTNNAC	5 cut(s)	282, 438, 632, 650, 685
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	257, 353
Hsp92II	CATG	4 cut(s)	74, 136, 607, 621
KflI	GGGWCCC	1 cut(s)	309
KspAI	GTTAAC	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	357
LguI	GCTCTTC	1 cut(s)	497
LpnPI	CCDG	8 cut(s)	48, 149, 215, 270, 346, 495, 549, 666
Lsp1109I	GCAGC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	1 cut(s)	359
MbiI	CCGCTC	1 cut(s)	417
MboI	GATC	1 cut(s)	357
MboII	GAAGA	2 cut(s)	148, 514
MhlI	GDGCHC	2 cut(s)	270, 509
MluCI	AATT	3 cut(s)	117, 393, 450
MlyI	GAGTC	2 cut(s)	32, 65
MmeI	TCCRAC	2 cut(s)	33, 681
MnlI	CCTC	8 cut(s)	161, 205, 280, 323, 382, 448, 459, 566
MseI	TTAA	2 cut(s)	281, 408
MslI	CAYNNNNRTG	2 cut(s)	497, 512
NcoI	CCATGG	1 cut(s)	603
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	4 cut(s)	74, 136, 607, 621
NlaIV	GGNNCC	4 cut(s)	310, 311, 588, 601
NmuCI	GTSAC	1 cut(s)	490
OliI	CACNNNNGTG	1 cut(s)	497
PciSI	GCTCTTC	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	2 cut(s)	32, 64
PpsI	GAGTC	2 cut(s)	32, 64
PpuMI	RGGWCCY	1 cut(s)	309
PshAI	GACNNNNGTC	1 cut(s)	680
Psp5II	RGGWCCY	1 cut(s)	309
PspN4I	GGNNCC	4 cut(s)	310, 311, 588, 601
PspPI	GGNCC	2 cut(s)	309, 600
PspPPI	RGGWCCY	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	649
RsaNI	GTAC	1 cut(s)	648
RseI	CAYNNNNRTG	2 cut(s)	497, 512
SapI	GCTCTTC	1 cut(s)	497
SaqAI	TTAA	2 cut(s)	281, 408
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	2 cut(s)	309, 600
SchI	GAGTC	2 cut(s)	32, 65
SduI	GDGCHC	2 cut(s)	270, 509
SetI	ASST	8 cut(s)	13, 153, 204, 216, 372, 378, 386, 577
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	309
SmiMI	CAYNNNNRTG	2 cut(s)	497, 512
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	3 cut(s)	117, 393, 450
SsiI	CCGC	2 cut(s)	288, 417
SspI	AATATT	2 cut(s)	323, 423
SspMI	CTAG	1 cut(s)	42
StyI	CCWWGG	4 cut(s)	273, 384, 603, 671
TaqI	TCGA	1 cut(s)	315
TasI	AATT	3 cut(s)	117, 393, 450
TatI	WGTACW	1 cut(s)	647
Tru1I	TTAA	2 cut(s)	281, 408
Tru9I	TTAA	2 cut(s)	281, 408
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	149, 417
TspGWI	ACGGA	4 cut(s)	39, 40, 509, 649
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	309
XapI	RAATTY	2 cut(s)	117, 393
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.