Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003823

Physical Location & Seq

Genomic Coordinates Reverse (-)

30618275 .. 30618604

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1239800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGATATATCAGCACAAGGTCGCTACGTTGGAGGGAATTGCAGACGCGATCAGAAAGACCAAAATATTCAAGACTGAGTTTACGAAACAGCAAACGGAGGAGATTGTGAGGGATTTGGTTCTGGACAATCGAGTCGTGGAGGTGAAGAGCACTGGGATGGCGGAGTTTGCTTCTATTCAAATCGGAAAAGTTTGCTATAAATGCAAAAGCAAAGTAGGCGCAATGGCTTCCATTCCGTGTGGAGTTTGTCCGCGGATAAGTCAATGTACACCGGATGGCATTATTTCCCCATCGACCTGCGTCTACTTCGCAAAATGGTTGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0008150 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc34

Protein Analysis

110

Amino Acids

12.13

Weight (kDa)

8.77

Isoelectric Point (pI)

23.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc34	PF05158	6 - 108	7.4e-14	RNA polymerase Rpc34 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23710
fragaria_vesca	FvH4_6g29950 FvH4_6g29950 FvH4_6g41460
malus_domestica	MD08G1239800.v1.1 MD15G1431400.v1.1
prunus_persica	Prupe.1G576300_v2.0.a1 Prupe.5G067300_v2.0.a1
pyrus_communis	pycom08g20810 pycom15g38120
rosa_chinensis	RchiOBHm_Chr2g0135951 RchiOBHm_Chr6g0271261 RchiOBHm_Chr6g0271271
rosa_laevigata	RLG00000019491 RLG00000020962
rosa_multiflora	Rmu_sc0004866.1_g000010 Rmu_ssc0000343.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108750 Rroxscaffold_7G00200610
rosa_rugosa	Rorug02G0327000 Rorug02G0457600 Rorug06G0035800 Rorug06G0036000
rosa_samantha	Rh2BG385300 Rh2CG364400 Rh2DG401600 Rh6AG179300 Rh6BG182300 Rh6CG179200 Rh6DG170900
rosa_wichuraiana	Rw2G030860 Rw2G031070 Rw2G043270 Rw6G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	2 cut(s)	47, 253
AciI	CCGC	3 cut(s)	161, 251, 253
AfaI	GTAC	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	70, 179
Alw21I	GWGCWC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	152
BccI	CCATC	3 cut(s)	151, 269, 298
BfuAI	ACCTGC	1 cut(s)	305
BmrI	ACTGGG	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	162
BoxI	GACNNNNGTC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	251
BsaWI	WCCGGW	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	2 cut(s)	162, 280
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	47, 253
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp1407I	TGTACA	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	3 cut(s)	161, 251, 253
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	2 cut(s)	47, 253
BspMI	ACCTGC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	140
BstAUI	TGTACA	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	162, 280
BstFNI	CGCG	2 cut(s)	47, 253
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 201, 216
BstPAI	GACNNNNGTC	1 cut(s)	299
BstUI	CGCG	2 cut(s)	47, 253
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	162, 280
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	305
CfoI	GCGC	1 cut(s)	221
Cfr42I	CCGCGG	1 cut(s)	254
CseI	GACGC	2 cut(s)	53, 289
Csp6I	GTAC	1 cut(s)	267
CviJI	RGCY	1 cut(s)	227
CviKI_1	RGCY	1 cut(s)	227
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	1 cut(s)	176
FaiI	YATR	2 cut(s)	7, 198
FblI	GTMKAC	1 cut(s)	303
FokI	GGATG	2 cut(s)	169, 287
GlaI	GCGC	1 cut(s)	220
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	2 cut(s)	53, 289
HhaI	GCGC	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	3 cut(s)	81, 269, 304
Hpy188I	TCNGA	3 cut(s)	53, 185, 329
Hpy188III	TCNNGA	2 cut(s)	70, 122
Hpy8I	GTNNAC	3 cut(s)	81, 269, 304
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	41, 204
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 201, 216
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	26
HspAI	GCGC	1 cut(s)	219
KspI	CCGCGG	1 cut(s)	254
Kzo9I	GATC	1 cut(s)	48
LguI	GCTCTTC	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	107, 138, 285, 310
MaeII	ACGT	1 cut(s)	26
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	2 cut(s)	9, 300
MnlI	CCTC	4 cut(s)	25, 91, 102, 133
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	1 cut(s)	272
MvnI	CGCG	2 cut(s)	47, 253
MwoI	GCNNNNNNNGC	3 cut(s)	167, 201, 216
NdeII	GATC	1 cut(s)	48
PciSI	GCTCTTC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PshAI	GACNNNNGTC	1 cut(s)	299
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	155
SacII	CCGCGG	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	4 cut(s)	21, 29, 144, 299
Sfr303I	CCGCGG	1 cut(s)	254
SgrBI	CCGCGG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	3 cut(s)	161, 251, 253
SspI	AATATT	1 cut(s)	66
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	130, 293
TasI	AATT	1 cut(s)	36
TatI	WGTACW	1 cut(s)	266
TscAI	CASTG	1 cut(s)	157
TspGWI	ACGGA	2 cut(s)	110, 225
TspRI	CASTG	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.