Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003823

Physical Location & Seq

Genomic Coordinates Forward (+)

32585980 .. 32586405

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGCCGGTCATCAGAAGGGCCTTCAGCCCTTAAACGTAAACGCCAAGATTCCCAGTTGGACTCGTTGACAGAGCATGAGCGCAGAATCTATGATGCCATCCGCAGCACGAAAGATATGGGCATAAACAAACAAGCCATTAAGCGAGAAACAAACCTCACTGCGGTTCTGATAAACAAGTCCCTCAAAACACTTGAAGGCATGAAAAAGATAAAAGAGGTTAAAGGGATCCAATCCAAGGGAAGATGGGGATTATACATGGCTGTAGAATTTGAGCCCTCGAATGAGATAACCGGAGGCGCGTGGTATGAGAATGGGAACTTGGGTAGAGAGTCTGTTGACGTTGTGAAAAGGCTGTGCGTCATGTTCATAAACAAGCACGAAGTTGCTACCTTGAAAGGACAAGAATTCTCAATGAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0008150 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc34

Protein Analysis

142

Amino Acids

16.03

Weight (kDa)

9.68

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc34	PF05158	14 - 133	3e-27	RNA polymerase Rpc34 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23710
fragaria_vesca	FvH4_6g29950 FvH4_6g29950 FvH4_6g41460
malus_domestica	MD08G1239800.v1.1 MD15G1431400.v1.1
prunus_persica	Prupe.1G576300_v2.0.a1 Prupe.5G067300_v2.0.a1
pyrus_communis	pycom08g20810 pycom15g38120
rosa_chinensis	RchiOBHm_Chr2g0135951 RchiOBHm_Chr6g0271261 RchiOBHm_Chr6g0271271
rosa_laevigata	RLG00000019491 RLG00000020962
rosa_multiflora	Rmu_sc0004866.1_g000010 Rmu_ssc0000343.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108750 Rroxscaffold_7G00200610
rosa_rugosa	Rorug02G0327000 Rorug02G0457600 Rorug06G0035800 Rorug06G0036000
rosa_samantha	Rh2BG385300 Rh2CG364400 Rh2DG401600 Rh6AG179300 Rh6BG182300 Rh6CG179200 Rh6DG170900
rosa_wichuraiana	Rw2G030860 Rw2G031070 Rw2G043270 Rw6G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	302
AciI	CCGC	2 cut(s)	103, 164
AclWI	GGATC	2 cut(s)	223, 236
AcsI	RAATTY	2 cut(s)	269, 407
AcuI	CTGAAG	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	163, 238
AgsI	TTSAA	2 cut(s)	197, 397
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AlwI	GGATC	2 cut(s)	223, 236
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	2 cut(s)	269, 407
AspLEI	GCGC	2 cut(s)	84, 302
AspS9I	GGNCC	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	2 cut(s)	107, 240
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	230
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 238
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	163, 238
BseNI	ACTGG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	7, 294
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	2 cut(s)	163, 238
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	2 cut(s)	103, 164
BspANI	GGCC	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	230
BspPI	GGATC	2 cut(s)	223, 236
BsrFI	RCCGGY	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	302
BstHHI	GCGC	2 cut(s)	84, 302
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
CfoI	GCGC	2 cut(s)	84, 302
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	20
CseI	GACGC	1 cut(s)	349
CviAII	CATG	4 cut(s)	77, 202, 259, 364
CviJI	RGCY	7 cut(s)	6, 22, 29, 137, 263, 277, 355
CviKI_1	RGCY	7 cut(s)	6, 22, 29, 137, 263, 277, 355
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	4 cut(s)	80, 205, 262, 367
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	4 cut(s)	76, 201, 258, 363
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	106
GlaI	GCGC	2 cut(s)	83, 301
GluI	GCNGC	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	2 cut(s)	7, 294
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	2 cut(s)	84, 302
Hin1II	CATG	4 cut(s)	80, 205, 262, 367
Hin6I	GCGC	2 cut(s)	82, 300
HinP1I	GCGC	2 cut(s)	82, 300
HincII	GTYRAC	2 cut(s)	69, 340
HindII	GTYRAC	2 cut(s)	69, 340
HinfI	GANTC	4 cut(s)	50, 62, 87, 332
HpaII	CCGG	2 cut(s)	7, 294
Hpy166II	GTNNAC	3 cut(s)	41, 69, 340
Hpy188I	TCNGA	2 cut(s)	16, 171
Hpy8I	GTNNAC	3 cut(s)	41, 69, 340
HpyAV	CCTTC	3 cut(s)	11, 33, 191
HpyCH4IV	ACGT	2 cut(s)	37, 342
HpySE526I	ACGT	2 cut(s)	37, 342
Hsp92II	CATG	4 cut(s)	80, 205, 262, 367
HspAI	GCGC	2 cut(s)	82, 300
Kzo9I	GATC	1 cut(s)	228
LpnPI	CCDG	3 cut(s)	20, 68, 307
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	85
MaeII	ACGT	2 cut(s)	37, 342
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	1 cut(s)	255
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	3 cut(s)	269, 407, 421
MlyI	GAGTC	2 cut(s)	56, 341
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	167, 194, 211, 289, 290
MseI	TTAA	4 cut(s)	33, 141, 222, 424
MspI	CCGG	2 cut(s)	7, 294
MvnI	CGCG	1 cut(s)	302
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	4 cut(s)	80, 205, 262, 367
NlaIV	GGNNCC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	50, 87
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	2 cut(s)	56, 340
PpsI	GAGTC	2 cut(s)	56, 340
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	228
SaqAI	TTAA	4 cut(s)	33, 141, 222, 424
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	2 cut(s)	56, 341
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	5 cut(s)	40, 159, 222, 345, 395
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	264
Sse9I	AATT	3 cut(s)	269, 407, 421
SsiI	CCGC	2 cut(s)	103, 164
StyI	CCWWGG	1 cut(s)	237
TaiI	ACGT	2 cut(s)	40, 345
TaqI	TCGA	1 cut(s)	281
TasI	AATT	3 cut(s)	269, 407, 421
TfiI	GAWTC	2 cut(s)	50, 87
Tru1I	TTAA	4 cut(s)	33, 141, 222, 424
Tru9I	TTAA	4 cut(s)	33, 141, 222, 424
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	2 cut(s)	218, 358
TspRI	CASTG	1 cut(s)	166
XapI	RAATTY	2 cut(s)	269, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.