Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004866.1

Orthogroup ID

OG0003823

Physical Location & Seq

Genomic Coordinates Forward (+)

57763 .. 61221

Gene Structure 3459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004866.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggaggtcagagaggaccaaaaattgctcggagattggcggaacttagctgaagaggaagatgtcggcgaacttggccggagatggctggttccggtattgcctatggttcggctgaggtggaatacagcaaggagggttagaaacgtaaatgcagaaagcaaggtttggcatcagactttacatcttcccaaaccaaccctctctcctccgccttcttccctcgtctctctcaaaccgttcgccgcctcacaatctctcctcttcgcccgcctgtgcttatcctcctcatccgccacaattagctctgtcgatacccctctggaaattgagctagcccacgaaggaatgagcagatcacaagagccttcagcccttaaacggaagcgctcggactcgcaatccgggtctttgacagagcatgaaagcaaactctatgatgccatccgcagcaaggcagatatgggcatgtctgtacaagacttgaggcgagaaacaggactccagaacaatttatttaccaaggccatcaaaacacttcaagccaaacaactgataaaagaggttaaaaattttgaaaacaagacgaggaaacattacatggctacagagtttgagccctcgaaggagataactggtggtgcttggtatgataatggacagttggatactgagtttataaaggttgtaaaacgtggggttgtgaaggtcattcatgatcagaagattgccaccttggaggaaatttcacatgcaattaggatgaagaagttacttactgtcaacttatctgcacaggaattgaaacaggttcttggggctttggttttggacaatgaggtccagaaggtggagagcactgatacgggggactttgtcggtgctaaagctaggaaagatttttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0008150 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc34

Protein Analysis

302

Amino Acids

34.13

Weight (kDa)

9.23

Isoelectric Point (pI)

65.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23710
fragaria_vesca	FvH4_6g29950 FvH4_6g29950 FvH4_6g41460
malus_domestica	MD08G1239800.v1.1 MD15G1431400.v1.1
prunus_persica	Prupe.1G576300_v2.0.a1 Prupe.5G067300_v2.0.a1
pyrus_communis	pycom08g20810 pycom15g38120
rosa_chinensis	RchiOBHm_Chr2g0135951 RchiOBHm_Chr6g0271261 RchiOBHm_Chr6g0271271
rosa_laevigata	RLG00000019491 RLG00000020962
rosa_multiflora	Rmu_sc0004866.1_g000010 Rmu_ssc0000343.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108750 Rroxscaffold_7G00200610
rosa_rugosa	Rorug02G0327000 Rorug02G0457600 Rorug06G0035800 Rorug06G0036000
rosa_samantha	Rh2BG385300 Rh2CG364400 Rh2DG401600 Rh6AG179300 Rh6BG182300 Rh6CG179200 Rh6DG170900
rosa_wichuraiana	Rw2G030860 Rw2G031070 Rw2G043270 Rw6G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	680
AasI	GACNNNNNNGTC	1 cut(s)	839
AccB7I	CCANNNNNTGG	1 cut(s)	850
AciI	CCGC	6 cut(s)	40, 212, 246, 271, 294, 448
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	571, 744
AcuI	CTGAAG	2 cut(s)	72, 354
AfaI	GTAC	1 cut(s)	477
AfeI	AGCGCT	1 cut(s)	389
AfiI	CCNNNNNNNGG	3 cut(s)	381, 454, 850
AgsI	TTSAA	3 cut(s)	542, 578, 805
AluBI	AGCT	4 cut(s)	50, 306, 334, 890
AluI	AGCT	4 cut(s)	50, 306, 334, 890
Alw21I	GWGCWC	1 cut(s)	860
Alw26I	GTCTC	1 cut(s)	232
Aor51HI	AGCGCT	1 cut(s)	389
AoxI	GGCC	2 cut(s)	76, 525
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	2 cut(s)	571, 744
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	16, 841
AsuC2I	CCSGG	1 cut(s)	406
AsuNHI	GCTAGC	1 cut(s)	334
AvaII	GGWCC	2 cut(s)	16, 841
BanII	GRGCYC	1 cut(s)	621
Bbv12I	GWGCWC	1 cut(s)	860
BbvCI	CCTCAGC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	3 cut(s)	78, 452, 536
BciVI	GTATCC	1 cut(s)	661
BclI	TGATCA	1 cut(s)	718
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	335, 891
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	661
BisI	GCNGC	2 cut(s)	246, 451
BlsI	GCNGC	2 cut(s)	247, 452
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	2 cut(s)	16, 841
BmgT120I	GGNCC	2 cut(s)	16, 841
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	2 cut(s)	181, 430
BmtI	GCTAGC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	505
BpuMI	CCSGG	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	522, 735
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	4 cut(s)	190, 220, 243, 273
Bsc4I	CCNNNNNNNGG	3 cut(s)	381, 454, 850
Bse1I	ACTGG	1 cut(s)	640
BseDI	CCNNGG	2 cut(s)	522, 735
BseGI	GGATG	3 cut(s)	290, 444, 768
BseLI	CCNNNNNNNGG	3 cut(s)	381, 454, 850
BseMII	CTCAG	2 cut(s)	107, 663
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	3 cut(s)	198, 251, 277
BseXI	GCAGC	1 cut(s)	462
BsgI	GTGCAG	1 cut(s)	777
BshFI	GGCC	2 cut(s)	78, 527
BsiHKAI	GWGCWC	1 cut(s)	860
BsiSI	CCGG	3 cut(s)	79, 95, 405
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	3 cut(s)	381, 454, 850
BsmAI	GTCTC	1 cut(s)	232
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	884
BsnI	GGCC	2 cut(s)	78, 527
Bsp1286I	GDGCHC	2 cut(s)	621, 860
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	2 cut(s)	356, 718
BspACI	CCGC	6 cut(s)	40, 212, 246, 271, 294, 448
BspANI	GGCC	2 cut(s)	78, 527
BspCNI	CTCAG	2 cut(s)	108, 664
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	93
BspOI	GCTAGC	1 cut(s)	338
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	522, 735
BssMI	GATC	2 cut(s)	356, 718
BssT1I	CCWWGG	2 cut(s)	522, 735
Bst4CI	ACNGT	3 cut(s)	240, 663, 781
Bst6I	CTCTTC	2 cut(s)	48, 269
BstAUI	TGTACA	1 cut(s)	475
BstC8I	GCNNGC	2 cut(s)	271, 336
BstDEI	CTNAG	3 cut(s)	46, 116, 672
BstF5I	GGATG	3 cut(s)	290, 444, 768
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	2 cut(s)	359, 721
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	356, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	472, 755
BstSCI	CCNGG	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	2 cut(s)	78, 527
BtsCI	GGATG	3 cut(s)	290, 444, 768
BtsIMutI	CAGTG	1 cut(s)	858
Cac8I	GCNNGC	2 cut(s)	271, 336
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	2 cut(s)	16, 841
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	5 cut(s)	422, 469, 601, 716, 752
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	3 cut(s)	46, 116, 672
DpnI	GATC	2 cut(s)	358, 720
DpnII	GATC	2 cut(s)	356, 718
DrdI	GACNNNNNNGTC	1 cut(s)	839
DseDI	GACNNNNNNGTC	1 cut(s)	839
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	48, 269
EarI	CTCTTC	2 cut(s)	48, 269
EciI	GGCGGA	3 cut(s)	55, 201, 283
Eco130I	CCWWGG	2 cut(s)	522, 735
Eco24I	GRGCYC	1 cut(s)	621
Eco47I	GGWCC	2 cut(s)	16, 841
Eco47III	AGCGCT	1 cut(s)	389
Eco57I	CTGAAG	2 cut(s)	72, 354
EcoT14I	CCWWGG	2 cut(s)	522, 735
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	2 cut(s)	522, 735
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	5 cut(s)	425, 472, 604, 719, 755
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	5 cut(s)	421, 468, 600, 715, 751
FauI	CCCGC	1 cut(s)	278
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	2 cut(s)	246, 451
FokI	GGATG	3 cut(s)	277, 431, 775
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	2 cut(s)	246, 451
FspBI	CTAG	2 cut(s)	335, 891
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	2 cut(s)	246, 451
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	2 cut(s)	78, 527
HapII	CCGG	3 cut(s)	79, 95, 405
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	5 cut(s)	425, 472, 604, 719, 755
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HinfI	GANTC	2 cut(s)	395, 501
HpaII	CCGG	3 cut(s)	79, 95, 405
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	5 cut(s)	11, 32, 177, 394, 723
Hpy188III	TCNNGA	4 cut(s)	323, 505, 716, 844
Hpy8I	GTNNAC	1 cut(s)	784
HpyAV	CCTTC	6 cut(s)	225, 338, 378, 619, 700, 841
HpyCH4III	ACNGT	3 cut(s)	240, 663, 781
HpyCH4IV	ACGT	2 cut(s)	147, 694
HpyCH4V	TGCA	3 cut(s)	155, 755, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	3 cut(s)	46, 116, 672
HpySE526I	ACGT	2 cut(s)	147, 694
Hsp92II	CATG	5 cut(s)	425, 472, 604, 719, 755
HspAI	GCGC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	2 cut(s)	356, 718
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	2 cut(s)	181, 430
MaeI	CTAG	2 cut(s)	335, 891
MaeII	ACGT	2 cut(s)	147, 694
MaeIII	GTNAC	1 cut(s)	771
MalI	GATC	2 cut(s)	358, 720
MboI	GATC	2 cut(s)	356, 718
MboII	GAAGA	7 cut(s)	65, 71, 179, 210, 256, 736, 778
MhlI	GDGCHC	2 cut(s)	621, 860
MluCI	AATT	8 cut(s)	23, 300, 327, 511, 571, 744, 756, 800
MlyI	GAGTC	2 cut(s)	389, 495
MmeI	TCCRAC	1 cut(s)	645
MseI	TTAA	2 cut(s)	378, 567
MspI	CCGG	3 cut(s)	79, 95, 405
MspR9I	CCNGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	2 cut(s)	356, 718
NheI	GCTAGC	1 cut(s)	334
NlaIII	CATG	5 cut(s)	425, 472, 604, 719, 755
NlaIV	GGNNCC	1 cut(s)	93
NspI	RCATGY	2 cut(s)	472, 755
PagI	TCATGA	1 cut(s)	715
PflFI	GACNNNGTC	1 cut(s)	875
PflMI	CCANNNNNTGG	1 cut(s)	850
PkrI	GCNGC	2 cut(s)	247, 452
PleI	GAGTC	2 cut(s)	389, 495
PpsI	GAGTC	2 cut(s)	389, 495
PsiI	TTATAA	1 cut(s)	680
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	16, 841
PsyI	GACNNNGTC	1 cut(s)	875
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	378, 567
SatI	GCNGC	2 cut(s)	246, 451
Sau3AI	GATC	2 cut(s)	356, 718
Sau96I	GGNCC	2 cut(s)	16, 841
SchI	GAGTC	2 cut(s)	389, 495
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	2 cut(s)	621, 860
SfaNI	GCATC	2 cut(s)	181, 430
SfcI	CTRYAG	1 cut(s)	606
SinI	GGWCC	2 cut(s)	16, 841
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	8 cut(s)	23, 300, 327, 511, 571, 744, 756, 800
SsiI	CCGC	6 cut(s)	40, 212, 246, 271, 294, 448
SspMI	CTAG	2 cut(s)	335, 891
StyD4I	CCNGG	1 cut(s)	404
StyI	CCWWGG	2 cut(s)	522, 735
TaaI	ACNGT	3 cut(s)	240, 663, 781
TaiI	ACGT	2 cut(s)	150, 697
TaqI	TCGA	2 cut(s)	312, 623
TasI	AATT	8 cut(s)	23, 300, 327, 511, 571, 744, 756, 800
TatI	WGTACW	1 cut(s)	475
TauI	GCSGC	1 cut(s)	248
Tru1I	TTAA	2 cut(s)	378, 567
Tru9I	TTAA	2 cut(s)	378, 567
TscAI	CASTG	1 cut(s)	865
TseI	GCWGC	1 cut(s)	450
TspDTI	ATGAA	3 cut(s)	438, 704, 779
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	1 cut(s)	865
Tth111I	GACNNNGTC	1 cut(s)	875
Van91I	CCANNNNNTGG	1 cut(s)	850
VpaK11BI	GGWCC	2 cut(s)	16, 841
XapI	RAATTY	2 cut(s)	571, 744
XceI	RCATGY	2 cut(s)	472, 755
XspI	CTAG	2 cut(s)	335, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.