Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003823

Physical Location & Seq

Genomic Coordinates Reverse (-)

20452035 .. 20453190

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTAGTACTTTTGGGCCGGCCTTGGCGAATCGCGACAGCGGCGACAGCACCCGTCACACCACCACCATCGCTCATCGGACCACCATCGCCCAGTGGGGACTGCAACTCTGCATCTGCAAATTTCCTCTCCTCCCGTCGTGATTCGAGAGTCCCGACTCCCAATCCGGCAATCCCGCCGACCAAACGCCCAAATCCCTCCCCTCCAACCGTGCAAAACCACACCTCTTCTCCCGCGCAAGGACGACGAACGCGAATTAAATCGAGGATCAGAGCAATGAGCAAACGGAAACAGCCAGACTCTGGTTTCCCGGCGGACTCTTTGAGCCAGAATGAGCGGATTCTATACAGTGTGATCCATAGCAAGCAAGATATGGGAATTTGGACGCGGGACATGAAGAAAGAGACAAACCTCCCTGACAAGGTGTTTAACCCAACGTTGAAAACGCTTCAAGCCAAGAAAGTGATACAAGAAGTTGTAAACGTCCAAAGCAAGGGGAGAAAGCATTACATTGCGGCAGAATTCGAGCCCTCCAAGGAGTTAACCGGCGGGGCTTGGTACTCCGAGGGGAAACTCGACAAAGATTATATAAGCCTCGTGAAAGACCAGTTTGCGAAGATGATATATCAGCACAAGGTCGCTACGTTGGAGGGAATTGCAGACGCGATCAGAAAGACCAAAATATTCAAGACTGAGTTTACGAAACAGCAAACGGAGGAGATTGTGAGGGATTTGGTTCTGGACAGTCGAGTCGTGGAGGTGAAGAGCACTGGGATGGGGGAGTTTGCTTCTGTTCAAATCGGAAAAGTTTGCTATAAATGCAAAAGCAAGGGAGGTACCAGAGGGGAAACCAAAGCAGGCGCAATGGCTTCCATTCCGTGTGGAGTTTGTCCGCGGATAGTCAATGCACACCGGATGGCATTATTTCCCCATCGACCTGCGTCTACTTCGCAAAATGGTTGGATTATTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0008150 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc34

Protein Analysis

325

Amino Acids

35.76

Weight (kDa)

10.03

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc34	PF05158	106 - 211	2.7e-28	RNA polymerase Rpc34 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23710
fragaria_vesca	FvH4_6g29950 FvH4_6g29950 FvH4_6g41460
malus_domestica	MD08G1239800.v1.1 MD15G1431400.v1.1
prunus_persica	Prupe.1G576300_v2.0.a1 Prupe.5G067300_v2.0.a1
pyrus_communis	pycom08g20810 pycom15g38120
rosa_chinensis	RchiOBHm_Chr2g0135951 RchiOBHm_Chr6g0271261 RchiOBHm_Chr6g0271271
rosa_laevigata	RLG00000019491 RLG00000020962
rosa_multiflora	Rmu_sc0004866.1_g000010 Rmu_ssc0000343.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108750 Rroxscaffold_7G00200610
rosa_rugosa	Rorug02G0327000 Rorug02G0457600 Rorug06G0035800 Rorug06G0036000
rosa_samantha	Rh2BG385300 Rh2CG364400 Rh2DG401600 Rh6AG179300 Rh6BG182300 Rh6CG179200 Rh6DG170900
rosa_wichuraiana	Rw2G030860 Rw2G031070 Rw2G043270 Rw6G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	749
Acc36I	ACCTGC	1 cut(s)	946
Acc65I	GGTACC	1 cut(s)	836
AccB1I	GGYRCC	1 cut(s)	836
AccB7I	CCANNNNNTGG	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	944
AccII	CGCG	6 cut(s)	35, 236, 253, 388, 665, 895
AclI	AACGTT	1 cut(s)	437
AclWI	GGATC	2 cut(s)	275, 349
AcsI	RAATTY	3 cut(s)	121, 378, 521
AfaI	GTAC	3 cut(s)	9, 560, 838
AfiI	CCNNNNNNNGG	4 cut(s)	239, 302, 421, 493
AgsI	TTSAA	4 cut(s)	442, 452, 688, 797
Alw21I	GWGCWC	1 cut(s)	770
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	275, 349
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	16, 20
ApoI	RAATTY	3 cut(s)	121, 378, 521
Asp718I	GGTACC	1 cut(s)	836
AspLEI	GCGC	2 cut(s)	238, 863
AspS9I	GGNCC	2 cut(s)	16, 80
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	772
AvaII	GGWCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	836
BanII	GRGCYC	1 cut(s)	531
BauI	CACGAG	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	770
BccI	CCATC	5 cut(s)	76, 94, 769, 910, 939
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	946
BisI	GCNGC	2 cut(s)	42, 516
BlsI	GCNGC	2 cut(s)	43, 517
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	16, 80
BmiI	GGNNCC	1 cut(s)	838
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	2 cut(s)	87, 780
BmsI	GCATC	1 cut(s)	122
BmuI	ACTGGG	2 cut(s)	87, 780
BoxI	GACNNNNGTC	1 cut(s)	940
BpuMI	CCSGG	1 cut(s)	311
BsaJI	CCNNGG	4 cut(s)	23, 534, 564, 893
BsaWI	WCCGGW	1 cut(s)	912
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 302, 421, 493
Bse118I	RCCGGY	2 cut(s)	18, 545
Bse1I	ACTGG	3 cut(s)	93, 607, 775
Bse3DI	GCAATG	3 cut(s)	282, 510, 870
BseDI	CCNNGG	4 cut(s)	23, 534, 564, 893
BseGI	GGATG	2 cut(s)	780, 921
BseLI	CCNNNNNNNGG	4 cut(s)	239, 302, 421, 493
BseMI	GCAATG	3 cut(s)	282, 510, 870
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	3 cut(s)	93, 607, 775
BseRI	GAGGAG	2 cut(s)	121, 731
Bsh1236I	CGCG	6 cut(s)	35, 236, 253, 388, 665, 895
BshFI	GGCC	2 cut(s)	18, 22
BshNI	GGYRCC	1 cut(s)	836
BsiHKAI	GWGCWC	1 cut(s)	770
BsiSI	CCGG	5 cut(s)	19, 167, 311, 546, 913
BslFI	GGGAC	3 cut(s)	113, 137, 404
BslI	CCNNNNNNNGG	4 cut(s)	239, 302, 421, 493
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	3 cut(s)	113, 137, 404
BsnI	GGCC	2 cut(s)	18, 22
Bsp1286I	GDGCHC	2 cut(s)	531, 770
Bsp143I	GATC	3 cut(s)	267, 354, 666
Bsp68I	TCGCGA	1 cut(s)	35
BspANI	GGCC	2 cut(s)	18, 22
BspCNI	CTCAG	1 cut(s)	685
BspFNI	CGCG	6 cut(s)	35, 236, 253, 388, 665, 895
BspLI	GGNNCC	1 cut(s)	838
BspMI	ACCTGC	1 cut(s)	946
BspPI	GGATC	2 cut(s)	275, 349
BspQI	GCTCTTC	1 cut(s)	758
BspT107I	GGYRCC	1 cut(s)	836
BsrBI	CCGCTC	1 cut(s)	337
BsrDI	GCAATG	3 cut(s)	282, 510, 870
BsrFI	RCCGGY	2 cut(s)	18, 545
BsrI	ACTGG	3 cut(s)	93, 607, 775
BssAI	RCCGGY	2 cut(s)	18, 545
BssECI	CCNNGG	4 cut(s)	23, 534, 564, 893
BssMI	GATC	3 cut(s)	267, 354, 666
BssSI	CACGAG	1 cut(s)	596
BssT1I	CCWWGG	2 cut(s)	23, 534
Bst2BI	CACGAG	1 cut(s)	596
Bst4CI	ACNGT	3 cut(s)	211, 350, 746
Bst6I	CTCTTC	2 cut(s)	232, 758
BstC8I	GCNNGC	3 cut(s)	20, 365, 859
BstDEI	CTNAG	1 cut(s)	693
BstDSI	CCRYGG	1 cut(s)	893
BstF5I	GGATG	2 cut(s)	780, 921
BstFNI	CGCG	6 cut(s)	35, 236, 253, 388, 665, 895
BstHHI	GCGC	2 cut(s)	238, 863
BstKTI	GATC	3 cut(s)	270, 357, 669
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	3 cut(s)	267, 354, 666
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 47, 819
BstPAI	GACNNNNGTC	1 cut(s)	940
BstSCI	CCNGG	1 cut(s)	309
BstUI	CGCG	6 cut(s)	35, 236, 253, 388, 665, 895
BsuRI	GGCC	2 cut(s)	18, 22
BtgI	CCRYGG	1 cut(s)	893
BtgZI	GCGATG	2 cut(s)	54, 72
BtsCI	GGATG	2 cut(s)	780, 921
BtsIMutI	CAGTG	3 cut(s)	100, 355, 768
BtuMI	TCGCGA	1 cut(s)	35
BveI	ACCTGC	1 cut(s)	946
Cac8I	GCNNGC	3 cut(s)	20, 365, 859
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	2 cut(s)	238, 863
Cfr10I	RCCGGY	2 cut(s)	18, 545
Cfr13I	GGNCC	2 cut(s)	16, 80
Cfr42I	CCGCGG	1 cut(s)	896
CseI	GACGC	3 cut(s)	394, 671, 930
Csp6I	GTAC	3 cut(s)	8, 559, 837
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	9 cut(s)	18, 22, 295, 327, 455, 529, 554, 594, 869
CviKI_1	RGCY	9 cut(s)	18, 22, 295, 327, 455, 529, 554, 594, 869
CviQI	GTAC	3 cut(s)	8, 559, 837
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	3 cut(s)	269, 356, 668
DpnII	GATC	3 cut(s)	267, 354, 666
DrdI	GACNNNNNNGTC	1 cut(s)	749
DseDI	GACNNNNNNGTC	1 cut(s)	749
Eam1104I	CTCTTC	2 cut(s)	232, 758
EarI	CTCTTC	2 cut(s)	232, 758
EciI	GGCGGA	1 cut(s)	329
Eco130I	CCWWGG	2 cut(s)	23, 534
Eco24I	GRGCYC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	521
EcoT14I	CCWWGG	2 cut(s)	23, 534
EcoT38I	GRGCYC	1 cut(s)	531
ErhI	CCWWGG	2 cut(s)	23, 534
FaeI	CATG	1 cut(s)	397
FaiI	YATR	8 cut(s)	346, 360, 374, 395, 588, 590, 625, 816
FaqI	GGGAC	3 cut(s)	113, 137, 404
FatI	CATG	1 cut(s)	393
FauI	CCCGC	4 cut(s)	183, 241, 381, 542
FblI	GTMKAC	1 cut(s)	944
Fnu4HI	GCNGC	2 cut(s)	42, 516
FokI	GGATG	2 cut(s)	787, 928
FriOI	GRGCYC	1 cut(s)	531
FseI	GGCCGGCC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	42, 516
GlaI	GCGC	2 cut(s)	237, 862
GluI	GCNGC	2 cut(s)	42, 516
HaeIII	GGCC	2 cut(s)	18, 22
HapII	CCGG	5 cut(s)	19, 167, 311, 546, 913
HgaI	GACGC	3 cut(s)	394, 671, 930
HhaI	GCGC	2 cut(s)	238, 863
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	2 cut(s)	236, 861
HinP1I	GCGC	2 cut(s)	236, 861
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	8 cut(s)	30, 143, 150, 157, 299, 317, 340, 750
HpaI	GTTAAC	1 cut(s)	543
HpaII	CCGG	5 cut(s)	19, 167, 311, 546, 913
HphI	GGTGA	1 cut(s)	772
Hpy166II	GTNNAC	4 cut(s)	481, 543, 699, 945
Hpy188I	TCNGA	5 cut(s)	80, 272, 565, 671, 803
Hpy188III	TCNNGA	7 cut(s)	34, 140, 147, 154, 598, 688, 740
Hpy8I	GTNNAC	4 cut(s)	481, 543, 699, 945
Hpy99I	CGWCG	2 cut(s)	141, 249
HpyCH4III	ACNGT	3 cut(s)	211, 350, 746
HpyCH4IV	ACGT	3 cut(s)	437, 483, 644
HpyCH4V	TGCA	7 cut(s)	105, 113, 119, 214, 659, 822, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 47, 819
HpyF3I	CTNAG	1 cut(s)	693
HpySE526I	ACGT	3 cut(s)	437, 483, 644
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	2 cut(s)	236, 861
KpnI	GGTACC	1 cut(s)	840
KroI	GCCGGC	1 cut(s)	18
KroNI	GCCGGC	1 cut(s)	20
KspAI	GTTAAC	1 cut(s)	543
KspI	CCGCGG	1 cut(s)	896
Kzo9I	GATC	3 cut(s)	267, 354, 666
LguI	GCTCTTC	1 cut(s)	758
LweI	GCATC	1 cut(s)	122
MaeII	ACGT	3 cut(s)	437, 483, 644
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	269, 356, 668
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	3 cut(s)	267, 354, 666
MboII	GAAGA	4 cut(s)	219, 409, 628, 775
MhlI	GDGCHC	2 cut(s)	531, 770
MluCI	AATT	5 cut(s)	121, 255, 378, 521, 654
MlyI	GAGTC	5 cut(s)	151, 159, 293, 311, 759
MmeI	TCCRAC	3 cut(s)	230, 627, 941
MroNI	GCCGGC	1 cut(s)	18
MseI	TTAA	4 cut(s)	258, 429, 542, 973
MslI	CAYNNNNRTG	1 cut(s)	773
MspA1I	CMGCKG	2 cut(s)	41, 895
MspI	CCGG	5 cut(s)	19, 167, 311, 546, 913
MspR9I	CCNGG	1 cut(s)	311
MvnI	CGCG	6 cut(s)	35, 236, 253, 388, 665, 895
MwoI	GCNNNNNNNGC	3 cut(s)	41, 47, 819
NaeI	GCCGGC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	3 cut(s)	267, 354, 666
NgoMIV	GCCGGC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	1 cut(s)	838
NmuCI	GTSAC	1 cut(s)	55
NruI	TCGCGA	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	2 cut(s)	152, 250
PdiI	GCCGGC	1 cut(s)	20
PfeI	GAWTC	3 cut(s)	30, 143, 340
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	43, 517
PleI	GAGTC	5 cut(s)	151, 158, 293, 311, 758
PpsI	GAGTC	5 cut(s)	151, 158, 293, 311, 758
PshAI	GACNNNNGTC	1 cut(s)	940
Psp1406I	AACGTT	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	838
PspPI	GGNCC	2 cut(s)	16, 80
PstNI	CAGNNNCTG	1 cut(s)	302
RigI	GGCCGGCC	1 cut(s)	22
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	3 cut(s)	9, 560, 838
RsaNI	GTAC	3 cut(s)	8, 559, 837
RseI	CAYNNNNRTG	1 cut(s)	773
SacII	CCGCGG	1 cut(s)	896
SapI	GCTCTTC	1 cut(s)	758
SaqAI	TTAA	4 cut(s)	258, 429, 542, 973
SatI	GCNGC	2 cut(s)	42, 516
Sau3AI	GATC	3 cut(s)	267, 354, 666
Sau96I	GGNCC	2 cut(s)	16, 80
ScaI	AGTACT	1 cut(s)	9
SchI	GAGTC	5 cut(s)	151, 159, 293, 311, 759
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	531, 770
SfaNI	GCATC	1 cut(s)	122
Sfr303I	CCGCGG	1 cut(s)	896
SgrBI	CCGCGG	1 cut(s)	896
SinI	GGWCC	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	773
Sse9I	AATT	5 cut(s)	121, 255, 378, 521, 654
SspI	AATATT	1 cut(s)	684
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	2 cut(s)	23, 534
TaaI	ACNGT	3 cut(s)	211, 350, 746
TaiI	ACGT	3 cut(s)	440, 486, 647
TaqI	TCGA	6 cut(s)	146, 263, 525, 576, 748, 934
TasI	AATT	5 cut(s)	121, 255, 378, 521, 654
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	2 cut(s)	44, 518
TfiI	GAWTC	3 cut(s)	30, 143, 340
Tru1I	TTAA	4 cut(s)	258, 429, 542, 973
Tru9I	TTAA	4 cut(s)	258, 429, 542, 973
TscAI	CASTG	3 cut(s)	100, 355, 775
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	3 cut(s)	301, 728, 867
TspRI	CASTG	3 cut(s)	100, 355, 775
Van91I	CCANNNNNTGG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	3 cut(s)	121, 378, 521
XmiI	GTMKAC	1 cut(s)	944
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.