Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003823

Physical Location & Seq

Genomic Coordinates Forward (+)

58897699 .. 58898431

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0457600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCCACTGCTAGCCTTGTGACGAATTGTTTCTTTCTTCTTATTGCGTTCATATGGTTGCTAGGAGCGCCGCCTTGGATTTGGCTCCAGGCGGTTGCTGTCGAGGATGGCAGTTCTGGTTACCTGGTGGCTTCTCTGAGGCCAAGTTTTGACTGCTTGGGTCTGTGTTGGTCTGTATTGGTTCGATTCGACTGGGTCACTTATCGAGTTTCTGTTGAGGGTGGTGATGTCTCAAACTTCTTCGATTCTGCCTACCTTCGGTTACTACCGGCGGCAATGAAGTCTAGGAGCGTGGATTTGGTGCTTGTGGAGGGGTTTGATCTGCGATTGATCTTGAGGGATCAGAATATGGCGCTGATCTGGGTGCCTTTCGATCCTGGTGATGGTGCAGCTTGTTCGGCTGCAACCCACGACAGCAGTGGTGGCGGTTTGCTGGGCTGTGGTGGAATAATTGGGGTGCTCATAGCAATTTCACCCTACTGGGCCAGCTGGGCCTGGAGCTGGTTGGAGGGACTGACGCATGGCTGGAGGTGGGTGGGTTGGGTCCTACGATTGTTTAGGGCCTGGTGTGCCTTTGAAATGGGGGATGAGGGTAATTATTCCCTTTCTACTCCCCCTTGGAATTGGGTCGCTATGGCCCATAGTATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0008150 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc34

Protein Analysis

217

Amino Acids

23.96

Weight (kDa)

4.73

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23710
fragaria_vesca	FvH4_6g29950 FvH4_6g29950 FvH4_6g41460
malus_domestica	MD08G1239800.v1.1 MD15G1431400.v1.1
prunus_persica	Prupe.1G576300_v2.0.a1 Prupe.5G067300_v2.0.a1
pyrus_communis	pycom08g20810 pycom15g38120
rosa_chinensis	RchiOBHm_Chr2g0135951 RchiOBHm_Chr6g0271261 RchiOBHm_Chr6g0271271
rosa_laevigata	RLG00000019491 RLG00000020962
rosa_multiflora	Rmu_sc0004866.1_g000010 Rmu_ssc0000343.1_g000019
rosa_roxburghii	Rroxscaffold_2G00108750 Rroxscaffold_7G00200610
rosa_rugosa	Rorug02G0327000 Rorug02G0457600 Rorug06G0035800 Rorug06G0036000
rosa_samantha	Rh2BG385300 Rh2CG364400 Rh2DG401600 Rh6AG179300 Rh6BG182300 Rh6CG179200 Rh6DG170900
rosa_wichuraiana	Rw2G030860 Rw2G031070 Rw2G043270 Rw6G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	364
AciI	CCGC	4 cut(s)	71, 92, 272, 426
AclWI	GGATC	2 cut(s)	348, 368
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	3 cut(s)	258, 383, 501
AgsI	TTSAA	1 cut(s)	578
AjnI	CCWGG	5 cut(s)	87, 123, 376, 494, 563
AluBI	AGCT	3 cut(s)	392, 489, 501
AluI	AGCT	3 cut(s)	392, 489, 501
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	348, 368
AoxI	GGCC	6 cut(s)	3, 140, 483, 492, 561, 636
ApeKI	GCWGC	2 cut(s)	389, 401
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	2 cut(s)	70, 355
AspS9I	GGNCC	5 cut(s)	483, 492, 544, 561, 637
AsuHPI	GGTGA	3 cut(s)	236, 392, 465
AsuNHI	GCTAGC	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	388, 401
BccI	CCATC	2 cut(s)	101, 377
BcgI	CGANNNNNNTGC	2 cut(s)	378, 412
BciT130I	CCWGG	5 cut(s)	89, 125, 378, 496, 565
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	3 cut(s)	12, 62, 285
BfoI	RGCGCY	2 cut(s)	71, 356
BglI	GCCNNNNNGGC	1 cut(s)	491
BisI	GCNGC	4 cut(s)	71, 273, 390, 402
BlsI	GCNGC	4 cut(s)	72, 274, 391, 403
Bme1390I	CCNGG	5 cut(s)	89, 125, 378, 496, 565
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	5 cut(s)	483, 492, 544, 561, 637
BmiI	GGNNCC	3 cut(s)	86, 366, 545
BmrFI	CCNGG	5 cut(s)	89, 125, 378, 496, 565
BmrI	ACTGGG	2 cut(s)	202, 490
BmtI	GCTAGC	1 cut(s)	15
BmuI	ACTGGG	2 cut(s)	202, 490
BpmI	CTGGAG	3 cut(s)	71, 517, 547
BpuEI	CTTGAG	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	74, 617
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 383, 501
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	197, 485
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	5 cut(s)	89, 125, 378, 496, 565
BseDI	CCNNGG	2 cut(s)	74, 617
BseGI	GGATG	2 cut(s)	112, 592
BseLI	CCNNNNNNNGG	3 cut(s)	258, 383, 501
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	197, 485
BseXI	GCAGC	2 cut(s)	388, 401
BseYI	CCCAGC	2 cut(s)	433, 489
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	6 cut(s)	5, 142, 485, 494, 563, 638
BshNI	GGYRCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	3 cut(s)	258, 383, 501
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	525
BsnI	GGCC	6 cut(s)	5, 142, 485, 494, 563, 638
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	5 cut(s)	319, 330, 340, 357, 373
BspACI	CCGC	4 cut(s)	71, 92, 272, 426
BspANI	GGCC	6 cut(s)	5, 142, 485, 494, 563, 638
BspCNI	CTCAG	1 cut(s)	129
BspLI	GGNNCC	3 cut(s)	86, 366, 545
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	348, 368
BspT107I	GGYRCC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	197, 485
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	74, 617
BssMI	GATC	5 cut(s)	319, 330, 340, 357, 373
BssT1I	CCWWGG	2 cut(s)	74, 617
Bst2UI	CCWGG	5 cut(s)	89, 125, 378, 496, 565
BstC8I	GCNNGC	2 cut(s)	13, 487
BstDEI	CTNAG	1 cut(s)	137
BstEII	GGTNACC	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	112, 592
BstH2I	RGCGCY	2 cut(s)	71, 356
BstHHI	GCGC	2 cut(s)	70, 355
BstKTI	GATC	5 cut(s)	322, 333, 343, 360, 376
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	5 cut(s)	319, 330, 340, 357, 373
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 398, 423, 491, 569
BstNI	CCWGG	5 cut(s)	89, 125, 378, 496, 565
BstPI	GGTNACC	1 cut(s)	119
BstSCI	CCNGG	5 cut(s)	87, 123, 376, 494, 563
BstV1I	GCAGC	2 cut(s)	388, 401
BsuRI	GGCC	6 cut(s)	5, 142, 485, 494, 563, 638
BtsCI	GGATG	2 cut(s)	112, 592
BtsI	GCAGTG	2 cut(s)	6, 424
BtsIMutI	CAGTG	2 cut(s)	6, 424
Cac8I	GCNNGC	2 cut(s)	13, 487
CfoI	GCGC	2 cut(s)	70, 355
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	5 cut(s)	483, 492, 544, 561, 637
CseI	GACGC	1 cut(s)	526
CsiI	ACCWGGT	1 cut(s)	123
CviAII	CATG	1 cut(s)	521
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	5 cut(s)	321, 332, 342, 359, 375
DpnII	GATC	5 cut(s)	319, 330, 340, 357, 373
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	74, 617
Eco47I	GGWCC	1 cut(s)	544
Eco91I	GGTNACC	1 cut(s)	119
EcoO109I	RGGNCCY	2 cut(s)	544, 561
EcoO65I	GGTNACC	1 cut(s)	119
EcoRII	CCWGG	5 cut(s)	87, 123, 376, 494, 563
EcoT14I	CCWWGG	2 cut(s)	74, 617
ErhI	CCWWGG	2 cut(s)	74, 617
FaeI	CATG	1 cut(s)	524
FaiI	YATR	7 cut(s)	53, 55, 350, 464, 522, 635, 642
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	1 cut(s)	520
FauNDI	CATATG	1 cut(s)	53
Fnu4HI	GCNGC	4 cut(s)	71, 273, 390, 402
FokI	GGATG	2 cut(s)	119, 599
Fsp4HI	GCNGC	4 cut(s)	71, 273, 390, 402
FspBI	CTAG	3 cut(s)	12, 62, 285
GlaI	GCGC	2 cut(s)	69, 354
GluI	GCNGC	4 cut(s)	71, 273, 390, 402
GsaI	CCCAGC	2 cut(s)	437, 493
GsuI	CTGGAG	3 cut(s)	71, 517, 547
HaeII	RGCGCY	2 cut(s)	71, 356
HaeIII	GGCC	6 cut(s)	5, 142, 485, 494, 563, 638
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	526
HhaI	GCGC	2 cut(s)	70, 355
Hin1II	CATG	1 cut(s)	524
Hin6I	GCGC	2 cut(s)	68, 353
HinP1I	GCGC	2 cut(s)	68, 353
HinfI	GANTC	2 cut(s)	186, 245
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	3 cut(s)	236, 392, 465
Hpy188I	TCNGA	2 cut(s)	138, 345
Hpy188III	TCNNGA	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	389, 404
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 398, 423, 491, 569
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	524
HspAI	GCGC	2 cut(s)	68, 353
Kzo9I	GATC	5 cut(s)	319, 330, 340, 357, 373
LmnI	GCTCC	4 cut(s)	65, 90, 288, 498
Lsp1109I	GCAGC	2 cut(s)	388, 401
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	3 cut(s)	12, 62, 285
MaeIII	GTNAC	4 cut(s)	19, 119, 196, 261
MalI	GATC	5 cut(s)	321, 332, 342, 359, 375
MboI	GATC	5 cut(s)	319, 330, 340, 357, 373
MboII	GAAGA	2 cut(s)	29, 232
MhlI	GDGCHC	1 cut(s)	462
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	25, 450, 468, 595, 622
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	8 cut(s)	97, 132, 211, 304, 330, 502, 522, 583
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	652
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	489
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	5 cut(s)	89, 125, 378, 496, 565
MvaI	CCWGG	5 cut(s)	89, 125, 378, 496, 565
MwoI	GCNNNNNNNGC	5 cut(s)	67, 398, 423, 491, 569
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	5 cut(s)	319, 330, 340, 357, 373
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	3 cut(s)	86, 366, 545
NmuCI	GTSAC	2 cut(s)	19, 196
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	186, 245
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	4 cut(s)	72, 274, 391, 403
PpuMI	RGGWCCY	1 cut(s)	544
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	5 cut(s)	87, 123, 376, 494, 563
PspEI	GGTNACC	1 cut(s)	119
PspFI	CCCAGC	2 cut(s)	433, 489
PspGI	CCWGG	5 cut(s)	87, 123, 376, 494, 563
PspN4I	GGNNCC	3 cut(s)	86, 366, 545
PspPI	GGNCC	5 cut(s)	483, 492, 544, 561, 637
PspPPI	RGGWCCY	1 cut(s)	544
PsyI	GACNNNGTC	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	489
SaqAI	TTAA	1 cut(s)	652
SatI	GCNGC	4 cut(s)	71, 273, 390, 402
Sau3AI	GATC	5 cut(s)	319, 330, 340, 357, 373
Sau96I	GGNCC	5 cut(s)	483, 492, 544, 561, 637
ScrFI	CCNGG	5 cut(s)	89, 125, 378, 496, 565
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	6 cut(s)	126, 258, 394, 491, 503, 533
SexAI	ACCWGGT	1 cut(s)	123
SfiI	GGCCNNNNNGGCC	1 cut(s)	491
SinI	GGWCC	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	5 cut(s)	25, 450, 468, 595, 622
SsiI	CCGC	4 cut(s)	71, 92, 272, 426
SspMI	CTAG	3 cut(s)	12, 62, 285
StyD4I	CCNGG	5 cut(s)	87, 123, 376, 494, 563
StyI	CCWWGG	2 cut(s)	74, 617
TaqI	TCGA	6 cut(s)	102, 184, 189, 205, 243, 372
TasI	AATT	5 cut(s)	25, 450, 468, 595, 622
TauI	GCSGC	2 cut(s)	73, 275
TfiI	GAWTC	2 cut(s)	186, 245
Tru1I	TTAA	1 cut(s)	652
Tru9I	TTAA	1 cut(s)	652
TscAI	CASTG	2 cut(s)	13, 424
TseFI	GTSAC	2 cut(s)	19, 196
TseI	GCWGC	2 cut(s)	389, 401
Tsp45I	GTSAC	2 cut(s)	19, 196
TspDTI	ATGAA	2 cut(s)	40, 293
TspRI	CASTG	2 cut(s)	13, 424
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	3 cut(s)	12, 62, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.