AT5G23750

Remorin, N-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016080
Physical Location & Seq
Reverse (-)
8009657 .. 8011709
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23750.3

Sequence Viewer

Length: 609 bp
ATGGCTGAAGAGGAACCGAAGAAGGTGACAGAGACCGTGTCGGAACCAACTCCAACACCGGAAGTTCCGGTGGAGAAACCTGCTGCTGCTGCAGATGTTGCTCCTCAGGAGAAGCCTGTGGCTCCACCTCCCGTTCTTCCATCTCCGGCACCGGCAGAGGAGAAGCAAGAAGACTCTAAGGCTATTGTTCCCGTCGTCCCTAAAGAAGTAGAGGAAGAGAAGAAAGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAGACAGAGAAGAGGATGTCACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAACAAAGCTGAGAAGAAGCTTTCTTCAATTGGATCATGGGAGAACAACAAGAAAGCAGCTGTGGAAGCTGAGCTCAAGAAAATGGAGGAGCAATTGGAGAAGAAGAAGGCAGAGTATGTGGAGCAGATGAAGAACAAAATAGCTCAAATTCACAAGGAAGCAGAAGAGAAGAGAGCGATGATTGAAGCTAAGCGTGGAGAAGAAATTCTCAAAGCAGAGGAATTAGCAGCCAAGTACCGTGCCACTGGAACCGCTCCCAAAAAGCTTTTCGGATGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C Remorin_N

Protein Analysis

202

Amino Acids

22.45

Weight (kDa)

5.5

Isoelectric Point (pI)

72.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_N PF03766 58 - 115 1.9e-14 Remorin, N-terminal region
Remorin_C PF03763 119 - 224 1.1e-35 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23750 AT5G23750 AT5G23750
fragaria_vesca FvH4_5g02000 FvH4_5g02000
malus_domestica MD14G1099200.v1.1
prunus_persica Prupe.5G096200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198371
rosa_laevigata RLG00000003872
rosa_rugosa Rorug07G0047400 Rorug07G0047500
rosa_samantha Rh7AG170800 Rh7CG180500 Rh7DG173100
rosa_wichuraiana Rw7G014940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 148
AccBSI CCGCTC 1 cut(s) 581
AciI CCGC 1 cut(s) 579
AclWI GGATC 2 cut(s) 238, 367
AcsI RAATTY 2 cut(s) 474, 531
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 1 cut(s) 563
AgsI TTSAA 2 cut(s) 354, 512
AjuI GAANNNNNNNTTGG 1 cut(s) 578
AluBI AGCT 9 cut(s) 296, 335, 346, 386, 395, 400, 470, 515, 592
AluI AGCT 9 cut(s) 296, 335, 346, 386, 395, 400, 470, 515, 592
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 2 cut(s) 26, 260
AlwI GGATC 2 cut(s) 238, 367
ApeKI GCWGC 5 cut(s) 83, 86, 89, 383, 554
ApoI RAATTY 2 cut(s) 474, 531
Asp700I GAANNNNTTC 1 cut(s) 531
AsuHPI GGTGA 1 cut(s) 37
AxyI CCTNAGG 1 cut(s) 105
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 5 cut(s) 70, 73, 76, 395, 566
BccI CCATC 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 26, 260
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 5 cut(s) 84, 87, 90, 384, 555
BlpI GCTNAGC 2 cut(s) 396, 516
BlsI GCNGC 5 cut(s) 85, 88, 91, 385, 556
BmiI GGNNCC 5 cut(s) 15, 45, 123, 150, 577
BmsI GCATC 2 cut(s) 235, 590
BpiI GAAGAC 1 cut(s) 177
Bpu1102I GCTNAGC 2 cut(s) 396, 516
BpuEI CTTGAG 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 26
BsaWI WCCGGW 2 cut(s) 58, 67
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 577
Bse21I CCTNAGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 285, 605
BseMII CTCAG 4 cut(s) 119, 300, 327, 387
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 3 cut(s) 93, 173, 428
BseXI GCAGC 5 cut(s) 70, 73, 76, 395, 566
BshNI GGYRCC 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 4 cut(s) 59, 68, 146, 152
BslFI GGGAC 1 cut(s) 182
BsmAI GTCTC 2 cut(s) 26, 260
BsmFI GGGAC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 2 cut(s) 230, 359
Bsp1720I GCTNAGC 2 cut(s) 396, 516
BspACI CCGC 1 cut(s) 579
BspCNI CTCAG 4 cut(s) 118, 301, 328, 388
BspLI GGNNCC 5 cut(s) 15, 45, 123, 150, 577
BspMAI CTGCAG 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 2 cut(s) 238, 367
BspT107I GGYRCC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 581
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 1 cut(s) 151
BssMI GATC 2 cut(s) 230, 359
Bst4CI ACNGT 2 cut(s) 37, 566
Bst6I CTCTTC 6 cut(s) 3, 210, 269, 297, 486, 491
BstAPI GCANNNNNTGC 1 cut(s) 98
BstDEI CTNAG 6 cut(s) 105, 177, 309, 336, 396, 516
BstF5I GGATG 2 cut(s) 285, 605
BstKTI GATC 2 cut(s) 233, 362
BstMAI GTCTC 2 cut(s) 26, 260
BstMBI GATC 2 cut(s) 230, 359
BstMWI GCNNNNNNNGC 4 cut(s) 89, 98, 254, 392
BstNSI RCATGY 1 cut(s) 607
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 5 cut(s) 70, 73, 76, 395, 566
BstV2I GAAGAC 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 518
BtsCI GGATG 2 cut(s) 285, 605
BtsIMutI CAGTG 1 cut(s) 570
BveI ACCTGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 151
Csp6I GTAC 1 cut(s) 562
CviAII CATG 2 cut(s) 363, 604
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 6 cut(s) 105, 177, 309, 336, 396, 516
DpnI GATC 2 cut(s) 232, 361
DpnII GATC 2 cut(s) 230, 359
Eam1104I CTCTTC 6 cut(s) 3, 210, 269, 297, 486, 491
EarI CTCTTC 6 cut(s) 3, 210, 269, 297, 486, 491
Ecl136II GAGCTC 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 27
Eco81I CCTNAGG 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 605
EcoT38I GRGCYC 1 cut(s) 402
FaeI CATG 2 cut(s) 366, 607
FaiI YATR 3 cut(s) 364, 444, 605
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 362, 603
Fnu4HI GCNGC 5 cut(s) 84, 87, 90, 384, 555
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 5 cut(s) 84, 87, 90, 384, 555
FspBI CTAG 1 cut(s) 258
GluI GCNGC 5 cut(s) 84, 87, 90, 384, 555
HapII CCGG 4 cut(s) 59, 68, 146, 152
Hin1II CATG 2 cut(s) 366, 607
HindIII AAGCTT 3 cut(s) 294, 344, 590
HinfI GANTC 1 cut(s) 173
HpaII CCGG 4 cut(s) 59, 68, 146, 152
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 43, 599
Hpy188III TCNNGA 3 cut(s) 107, 242, 403
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 16, 221, 427
HpyCH4III ACNGT 2 cut(s) 37, 566
HpyCH4V TGCA 3 cut(s) 92, 318, 603
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 98, 254, 392
HpyF3I CTNAG 6 cut(s) 105, 177, 309, 336, 396, 516
Hsp92II CATG 2 cut(s) 366, 607
Kzo9I GATC 2 cut(s) 230, 359
LmnI GCTCC 5 cut(s) 106, 127, 415, 448, 586
LpnPI CCDG 9 cut(s) 72, 81, 92, 93, 129, 159, 165, 239, 558
Lsp1109I GCAGC 5 cut(s) 70, 73, 76, 395, 566
LweI GCATC 2 cut(s) 235, 590
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 25, 282
MalI GATC 2 cut(s) 232, 361
MbiI CCGCTC 1 cut(s) 581
MboI GATC 2 cut(s) 230, 359
MfeI CAATTG 2 cut(s) 354, 419
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 5 cut(s) 354, 419, 474, 531, 548
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 2 cut(s) 21, 77
MnlI CCTC 9 cut(s) 4, 114, 138, 151, 205, 270, 298, 406, 538
Mph1103I ATGCAT 1 cut(s) 605
MroXI GAANNNNTTC 1 cut(s) 531
MseI TTAA 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 4 cut(s) 59, 68, 146, 152
MunI CAATTG 2 cut(s) 354, 419
MwoI GCNNNNNNNGC 4 cut(s) 89, 98, 254, 392
NdeII GATC 2 cut(s) 230, 359
NlaIII CATG 2 cut(s) 366, 607
NlaIV GGNNCC 5 cut(s) 15, 45, 123, 150, 577
NmuCI GTSAC 2 cut(s) 25, 282
NsiI ATGCAT 1 cut(s) 605
NspI RCATGY 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 531
PflFI GACNNNGTC 1 cut(s) 37
PkrI GCNGC 5 cut(s) 85, 88, 91, 385, 556
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 402
PspN4I GGNNCC 5 cut(s) 15, 45, 123, 150, 577
PstI CTGCAG 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
SacI GAGCTC 1 cut(s) 402
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 5 cut(s) 84, 87, 90, 384, 555
Sau3AI GATC 2 cut(s) 230, 359
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 402
SfaNI GCATC 2 cut(s) 235, 590
SfcI CTRYAG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 5 cut(s) 354, 419, 474, 531, 548
SsiI CCGC 1 cut(s) 579
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 402
TaaI ACNGT 2 cut(s) 37, 566
TaqI TCGA 1 cut(s) 241
TasI AATT 5 cut(s) 354, 419, 474, 531, 548
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 2 cut(s) 25, 282
TseI GCWGC 5 cut(s) 83, 86, 89, 383, 554
Tsp45I GTSAC 2 cut(s) 25, 282
TspDTI ATGAA 1 cut(s) 470
TspRI CASTG 1 cut(s) 577
Tth111I GACNNNGTC 1 cut(s) 37
XapI RAATTY 2 cut(s) 474, 531
XceI RCATGY 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 1 cut(s) 258
Zsp2I ATGCAT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.