Rh7DG173100

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016080
Physical Location & Seq
Reverse (-)
15784485 .. 15793747
9263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG173100.1

Sequence Viewer

Length: 426 bp
ATGAACTATGTCTTCGTTGATGAAGAGAAGAGTGTGATCCCAGTGTCTGAAGAGAAGGCATCATCAGCTGGTGATCCTCTAGCAATTGTCAAAGATGTAATGTATGCAAAAATCGAAACAGAGAAAAGGCTGGCCTTAATCAAAGCATGGGAAGAAAGTGAAAAGACAAAAGCGGAGAACAGGCTGGGGAAGATTAGAGAGCACTTATTGAAGCCAGACAAAGAGAAGAGTCCCTCAAGGTGGAGGAGACAGCTTCAAAGTTTCGTGAATCCGGATCTACGCCTAGTAGATTGTTCGGATGCTAGAAATGGTGCAATATATGGCCCTTGGCATTCAAGTAAATGGACCCCTGGTTCACATTCTTGTTGTGAGAATTGTGAGTTTGATAATGCAAAAACAGTTGGCCACACTGACTTAGGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

141

Amino Acids

16.01

Weight (kDa)

6.52

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23750 AT5G23750 AT5G23750
fragaria_vesca FvH4_5g02000 FvH4_5g02000
malus_domestica MD14G1099200.v1.1
prunus_persica Prupe.5G096200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198371
rosa_laevigata RLG00000003872
rosa_rugosa Rorug07G0047400 Rorug07G0047500
rosa_samantha Rh7AG170800 Rh7CG180500 Rh7DG173100
rosa_wichuraiana Rw7G014940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 271
AciI CCGC 1 cut(s) 173
AclWI GGATC 3 cut(s) 31, 68, 282
AcoI YGGCCR 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 3 cut(s) 211, 257, 336
AjnI CCWGG 1 cut(s) 349
AloI GAACNNNNNNTCC 2 cut(s) 337, 369
AluBI AGCT 2 cut(s) 68, 253
AluI AGCT 2 cut(s) 68, 253
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 3 cut(s) 31, 68, 282
AlwNI CAGNNNCTG 1 cut(s) 47
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 3 cut(s) 132, 322, 403
AspS9I GGNCC 2 cut(s) 323, 345
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 345
BalI TGGCCA 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 3 cut(s) 80, 284, 303
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 345
BmgT120I GGNCC 2 cut(s) 323, 345
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 351
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 2 cut(s) 68, 289
BmuI ACTGGG 1 cut(s) 35
BoxI GACNNNNGTC 1 cut(s) 417
BpiI GAAGAC 1 cut(s) 4
BpuEI CTTGAG 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 326, 349
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 41
BseAI TCCGGA 1 cut(s) 271
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 326, 349
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 259
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 3 cut(s) 134, 324, 405
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 3 cut(s) 134, 324, 405
Bsp1286I GDGCHC 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 3 cut(s) 36, 73, 274
BspACI CCGC 1 cut(s) 173
BspANI GGCC 3 cut(s) 134, 324, 405
BspEI TCCGGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 347
BspPI GGATC 3 cut(s) 31, 68, 282
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 326, 349
BssMI GATC 3 cut(s) 36, 73, 274
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 4 cut(s) 18, 23, 45, 221
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 415
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 3 cut(s) 39, 76, 277
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 3 cut(s) 36, 73, 274
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 351
BstPAI GACNNNNGTC 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 349
BstV2I GAAGAC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 3 cut(s) 134, 324, 405
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 3 cut(s) 48, 408, 421
Cac8I GCNNGC 1 cut(s) 132
CaiI CAGNNNCTG 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 323, 345
CviAII CATG 1 cut(s) 147
CviJI RGCY 8 cut(s) 68, 130, 134, 184, 214, 253, 324, 405
CviKI_1 RGCY 8 cut(s) 68, 130, 134, 184, 214, 253, 324, 405
DdeI CTNAG 1 cut(s) 415
DpnI GATC 3 cut(s) 38, 75, 276
DpnII GATC 3 cut(s) 36, 73, 274
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 4 cut(s) 18, 23, 45, 221
EarI CTCTTC 4 cut(s) 18, 23, 45, 221
Eco130I CCWWGG 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 1 cut(s) 150
FaiI YATR 5 cut(s) 9, 105, 148, 319, 321
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 146
FokI GGATG 1 cut(s) 311
FspBI CTAG 3 cut(s) 80, 284, 303
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 3 cut(s) 134, 324, 405
HapII CCGG 1 cut(s) 272
Hin1II CATG 1 cut(s) 150
HinfI GANTC 2 cut(s) 229, 268
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 2 cut(s) 49, 298
Hpy188III TCNNGA 2 cut(s) 265, 272
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4V TGCA 3 cut(s) 107, 314, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 415
Hsp92II CATG 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 271
Kzo9I GATC 3 cut(s) 36, 73, 274
LpnPI CCDG 9 cut(s) 54, 54, 116, 166, 170, 228, 285, 336, 363
LweI GCATC 2 cut(s) 68, 289
MaeI CTAG 3 cut(s) 80, 284, 303
MaeIII GTNAC 1 cut(s) 419
MalI GATC 3 cut(s) 38, 75, 276
MboI GATC 3 cut(s) 36, 73, 274
MboII GAAGA 7 cut(s) 4, 35, 40, 62, 164, 202, 238
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 204
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 2 cut(s) 84, 373
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 3 cut(s) 87, 237, 244
Mox20I TGGCCA 1 cut(s) 405
MroI TCCGGA 1 cut(s) 271
MscI TGGCCA 1 cut(s) 405
MseI TTAA 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 351
MunI CAATTG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 3 cut(s) 36, 73, 274
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 1 cut(s) 419
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 268
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PshAI GACNNNNGTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 2 cut(s) 323, 345
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 137
Sau3AI GATC 3 cut(s) 36, 73, 274
Sau96I GGNCC 2 cut(s) 323, 345
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 204
SetI ASST 4 cut(s) 70, 242, 255, 421
SfaNI GCATC 2 cut(s) 68, 289
SinI GGWCC 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 2 cut(s) 84, 373
SsiI CCGC 1 cut(s) 173
SspMI CTAG 3 cut(s) 80, 284, 303
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 1 cut(s) 400
TaqI TCGA 1 cut(s) 114
TasI AATT 2 cut(s) 84, 373
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 2 cut(s) 48, 415
TseFI GTSAC 1 cut(s) 419
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 2 cut(s) 17, 36
TspRI CASTG 2 cut(s) 48, 415
VpaK11BI GGWCC 1 cut(s) 345
XspI CTAG 3 cut(s) 80, 284, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.