Rh7CG180500

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016080
Physical Location & Seq
Forward (+)
15542539 .. 15544751
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG180500.1

Sequence Viewer

Length: 396 bp
ATGGCCTACTTTATGGAAGAGGAGGATAAGAAAGAACAAGCAATGAACTATGTCTTCGCTGATGAAGAGAAGAGTGTGATCCCAGTGTCTGAAGAGAAGGCATCATCAGTTGGTGATCCTCTAGCAATTGTCAAAGATGTAATGTATGCAGAAATCGAAACAGAGAAAAGACTGGCCTTAATCAAAGCATGGGAAGAAAGTGAAAAGACAAAAGCGGAGAACAGGGCACATAAAAGGACGTCTGCAGTAGGTTTAATGGGAATTGAAGACAACAAGAAAACATACGTAGAGGCACAACTCAGAAAAATTGAGGAGACGTTTGAAAGAAATAAGGCAGAATATGCTGAGAAAATGAAGAATAAAGTGGCTGAAATTCCCAAGGCTGGGGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

131

Amino Acids

15.02

Weight (kDa)

5.0

Isoelectric Point (pI)

69.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 56 - 129 7.6e-15 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23750 AT5G23750 AT5G23750
fragaria_vesca FvH4_5g02000 FvH4_5g02000
malus_domestica MD14G1099200.v1.1
prunus_persica Prupe.5G096200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198371
rosa_laevigata RLG00000003872
rosa_rugosa Rorug07G0047400 Rorug07G0047500
rosa_samantha Rh7AG170800 Rh7CG180500 Rh7DG173100
rosa_wichuraiana Rw7G014940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
AciI CCGC 1 cut(s) 215
AclWI GGATC 2 cut(s) 73, 110
AcsI RAATTY 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 383, 384
AgsI TTSAA 2 cut(s) 266, 323
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 2 cut(s) 73, 110
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 2 cut(s) 3, 174
ApoI RAATTY 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 229
BbsI GAAGAC 2 cut(s) 46, 273
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 243
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 2 cut(s) 46, 273
BsaAI YACGTR 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 384
Bse1I ACTGG 2 cut(s) 83, 177
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 378
BseLI CCNNNNNNNGG 2 cut(s) 383, 384
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 313, 336
BseNI ACTGG 2 cut(s) 83, 177
BseRI GAGGAG 2 cut(s) 35, 326
BseSI GKGCMC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 383
BshFI GGCC 2 cut(s) 5, 176
BslI CCNNNNNNNGG 2 cut(s) 383, 384
BsmAI GTCTC 1 cut(s) 308
BsmBI CGTCTC 1 cut(s) 308
BsnI GGCC 2 cut(s) 5, 176
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 2 cut(s) 78, 115
BspACI CCGC 1 cut(s) 215
BspANI GGCC 2 cut(s) 5, 176
BspCNI CTCAG 2 cut(s) 312, 337
BspMAI CTGCAG 1 cut(s) 247
BspPI GGATC 2 cut(s) 73, 110
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 2 cut(s) 83, 177
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 2 cut(s) 78, 115
BssNI GRCGYC 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 378
Bst6I CTCTTC 4 cut(s) 12, 60, 65, 87
BstACI GRCGYC 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 299, 345
BstKTI GATC 2 cut(s) 81, 118
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 2 cut(s) 78, 115
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 229
BstSNI TACGTA 1 cut(s) 286
BstV2I GAAGAC 2 cut(s) 46, 273
BsuRI GGCC 2 cut(s) 5, 176
BtsIMutI CAGTG 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 89
CviAII CATG 1 cut(s) 189
CviJI RGCY 4 cut(s) 5, 176, 368, 383
CviKI_1 RGCY 4 cut(s) 5, 176, 368, 383
DdeI CTNAG 2 cut(s) 299, 345
DpnI GATC 2 cut(s) 80, 117
DpnII GATC 2 cut(s) 78, 115
Eam1104I CTCTTC 4 cut(s) 12, 60, 65, 87
EarI CTCTTC 4 cut(s) 12, 60, 65, 87
Eco105I TACGTA 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 1 cut(s) 192
FaiI YATR 7 cut(s) 14, 51, 147, 190, 231, 283, 342
FatI CATG 1 cut(s) 188
FspBI CTAG 1 cut(s) 122
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 2 cut(s) 5, 176
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 1 cut(s) 192
HphI GGTGA 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 91, 302
HpyAV CCTTC 1 cut(s) 91
HpyCH4IV ACGT 3 cut(s) 239, 285, 317
HpyCH4V TGCA 2 cut(s) 149, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 2 cut(s) 299, 345
HpySE526I ACGT 3 cut(s) 239, 285, 317
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 1 cut(s) 192
Kzo9I GATC 2 cut(s) 78, 115
LpnPI CCDG 4 cut(s) 96, 158, 208, 369
LweI GCATC 1 cut(s) 110
MaeI CTAG 1 cut(s) 122
MaeII ACGT 3 cut(s) 239, 285, 317
MalI GATC 2 cut(s) 80, 117
MboI GATC 2 cut(s) 78, 115
MboII GAAGA 8 cut(s) 29, 46, 77, 82, 104, 206, 278, 367
MfeI CAATTG 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 4 cut(s) 126, 261, 306, 372
MnlI CCTC 5 cut(s) 13, 16, 129, 283, 304
MseI TTAA 2 cut(s) 179, 254
MunI CAATTG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeII GATC 2 cut(s) 78, 115
NlaIII CATG 1 cut(s) 192
Ppu21I YACGTR 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 383
PstI CTGCAG 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 89
SaqAI TTAA 2 cut(s) 179, 254
Sau3AI GATC 2 cut(s) 78, 115
SduI GDGCHC 1 cut(s) 229
SetI ASST 4 cut(s) 242, 253, 288, 320
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 1 cut(s) 243
SgeI CNNG 8 cut(s) 50, 95, 134, 185, 201, 235, 286, 391
SnaBI TACGTA 1 cut(s) 286
Sse9I AATT 4 cut(s) 126, 261, 306, 372
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 122
StyI CCWWGG 1 cut(s) 378
TaiI ACGT 3 cut(s) 242, 288, 320
TaqI TCGA 1 cut(s) 156
TasI AATT 4 cut(s) 126, 261, 306, 372
Tru1I TTAA 2 cut(s) 179, 254
Tru9I TTAA 2 cut(s) 179, 254
TscAI CASTG 1 cut(s) 90
TspDTI ATGAA 3 cut(s) 59, 78, 368
TspRI CASTG 1 cut(s) 90
XapI RAATTY 1 cut(s) 372
XspI CTAG 1 cut(s) 122
ZraI GACGTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.