MD14G1099200.v1.1

Remorin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0016080
Physical Location & Seq
Forward (+)
15197056 .. 15197740
685 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1099200.v1.1.491

Sequence Viewer

Length: 369 bp
ATGGAGAAAAGGCTGGCCTTAATTAAAGCATGGGAAGAAAGTGAGAAGACAAAAGCAGAGAACAAGGCATACAGAAGGATGTCAATCGTAGAATTATGGGAAAACAACAAGAGAACCAATGTAGAGGCAGAACTCAGAAAAATTGAGGAAAAATATGAAAAAAAGAAGGCAGGGTATGCTGAGAAAATGAAGAACAAAGTTGCTGAAATACATAAAACAGGAGAAGAAAGGAGAGCTATCATTGAAGCCAAGGAAAAAGAGCAATCCCTGAAGGTGGAGGAAACAGCTGCAAAGTTTCGTTCGACTGGAAATACACCAAAGAAATTGCTGTTGTGGTGCTGCGTCTGTCAGCATTCTGCAGTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C Remorin_N

Protein Analysis

123

Amino Acids

14.33

Weight (kDa)

9.47

Isoelectric Point (pI)

64.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 3 - 108 2.1e-30 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23750 AT5G23750 AT5G23750
fragaria_vesca FvH4_5g02000 FvH4_5g02000
malus_domestica MD14G1099200.v1.1
prunus_persica Prupe.5G096200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198371
rosa_laevigata RLG00000003872
rosa_rugosa Rorug07G0047400 Rorug07G0047500
rosa_samantha Rh7AG170800 Rh7CG180500 Rh7DG173100
rosa_wichuraiana Rw7G014940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 1 cut(s) 245
AluBI AGCT 2 cut(s) 236, 287
AluI AGCT 2 cut(s) 236, 287
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 2 cut(s) 287, 339
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 274, 326
BfmI CTRYAG 1 cut(s) 357
BisI GCNGC 2 cut(s) 288, 340
BlsI GCNGC 2 cut(s) 289, 341
BpiI GAAGAC 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 84
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 148, 171
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 2 cut(s) 274, 326
BshFI GGCC 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 274
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 1 cut(s) 17
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 2 cut(s) 147, 172
BspMAI CTGCAG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 134, 180
BstF5I GGATG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 274, 326
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 15
CseI GACGC 1 cut(s) 331
CviAII CATG 1 cut(s) 30
CviJI RGCY 5 cut(s) 13, 17, 236, 248, 287
CviKI_1 RGCY 5 cut(s) 13, 17, 236, 248, 287
DdeI CTNAG 2 cut(s) 134, 180
Eco130I CCWWGG 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 1 cut(s) 33
FaiI YATR 6 cut(s) 31, 70, 97, 156, 177, 213
FatI CATG 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 288, 340
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 2 cut(s) 288, 340
GluI GCNGC 2 cut(s) 288, 340
HaeIII GGCC 1 cut(s) 17
HgaI GACGC 1 cut(s) 331
Hin1II CATG 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 69, 160, 265
HpyCH4V TGCA 2 cut(s) 290, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 134, 180
Hsp92II CATG 1 cut(s) 33
LpnPI CCDG 4 cut(s) 156, 204, 281, 291
Lsp1109I GCAGC 2 cut(s) 274, 326
MboII GAAGA 4 cut(s) 47, 58, 202, 236
MluCI AATT 4 cut(s) 21, 92, 141, 323
MnlI CCTC 3 cut(s) 118, 139, 271
MseI TTAA 2 cut(s) 20, 24
MspA1I CMGCKG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 176
NlaIII CATG 1 cut(s) 33
PacI TTAATTAA 1 cut(s) 24
PctI GAATGC 1 cut(s) 352
PkrI GCNGC 2 cut(s) 289, 341
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PstI CTGCAG 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 287
SaqAI TTAA 2 cut(s) 20, 24
SatI GCNGC 2 cut(s) 288, 340
SetI ASST 3 cut(s) 238, 276, 289
SfcI CTRYAG 1 cut(s) 357
SgeI CNNG 9 cut(s) 26, 42, 76, 121, 183, 231, 262, 280, 318
Sse9I AATT 4 cut(s) 21, 92, 141, 323
StyI CCWWGG 1 cut(s) 249
TaqI TCGA 1 cut(s) 302
TasI AATT 4 cut(s) 21, 92, 141, 323
Tru1I TTAA 2 cut(s) 20, 24
Tru9I TTAA 2 cut(s) 20, 24
TseI GCWGC 2 cut(s) 287, 339
TspDTI ATGAA 2 cut(s) 171, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.