Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0016080

Physical Location & Seq

Genomic Coordinates Reverse (-)

14787823 .. 14800543

Gene Structure 12721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G014940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAAGAGGAGGCTAAGAAAGAACAAGCAATGAACTATGTCTTCGTTGATGAAGACAAGAGTGTGATCCCAGTGTCTGAAGAGAAGGCATCATCAGCTGGTGATCCTCTAGCAATTGTCAAAGAAAAGTGCCCTTCTTTGGTCTTGAGAAGAAGAAGCCATGGGGCTGTGAAAAAGAATATGAAGATAAATTTGACAACGAAAGATGTAACGTATGCAGAAATCGAAACAGAGAAAAGGCTGGCCTTAATCAAAAAAACATACATAGAGGCACAACTCAGAAAAATTGAGACAGCACTTGTTGAAGCCAGACAAAGAGAAGAGTCCCTCAAGGTGGAGGAGACAGCTTCAAAGTTTCATGAATCCGGATCTACGCCTAGTAGATTGTTCGGGTGCTTCACCTGTTCTAACAATGTTCTATATATAGTTCTGGAAACCATCAAAACTGAAAAAGAGTTTGTTGTAAACTTTGATTTTATAGTATTTAGTGAACAAATTTTTATATCACGTACTCATATTACTCCACGGTTTTTCAGTATTTACAATAACTTGGCTCATAACAATTCAAAATTTTCAAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

194

Amino Acids

22.25

Weight (kDa)

7.69

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23750 AT5G23750 AT5G23750
fragaria_vesca	FvH4_5g02000 FvH4_5g02000
malus_domestica	MD14G1099200.v1.1
prunus_persica	Prupe.5G096200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0198371
rosa_laevigata	RLG00000003872
rosa_rugosa	Rorug07G0047400 Rorug07G0047500
rosa_samantha	Rh7AG170800 Rh7CG180500 Rh7DG173100
rosa_wichuraiana	Rw7G014940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	365
AclWI	GGATC	3 cut(s)	61, 98, 376
AcsI	RAATTY	3 cut(s)	190, 495, 569
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	2 cut(s)	139, 334
AgsI	TTSAA	4 cut(s)	305, 351, 567, 576
AluBI	AGCT	2 cut(s)	98, 347
AluI	AGCT	2 cut(s)	98, 347
Alw26I	GTCTC	2 cut(s)	284, 335
AlwI	GGATC	3 cut(s)	61, 98, 376
AlwNI	CAGNNNCTG	1 cut(s)	77
Aor13HI	TCCGGA	1 cut(s)	365
AoxI	GGCC	1 cut(s)	243
ApoI	RAATTY	3 cut(s)	190, 495, 569
AsuHPI	GGTGA	2 cut(s)	113, 391
BaeGI	GKGCMC	1 cut(s)	134
BbsI	GAAGAC	2 cut(s)	34, 60
BccI	CCATC	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	284, 335
BfaI	CTAG	2 cut(s)	110, 378
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	2 cut(s)	34, 60
BpuEI	CTTGAG	2 cut(s)	166, 314
BsaAI	YACGTR	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	160, 524
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 334
Bse1I	ACTGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	36
BseAI	TCCGGA	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	160, 524
BseLI	CCNNNNNNNGG	2 cut(s)	139, 334
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	292
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	2 cut(s)	23, 353
BseSI	GKGCMC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	139, 334
BsmAI	GTCTC	2 cut(s)	284, 335
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp13I	TCCGGA	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	66, 103, 368
Bsp19I	CCATGG	1 cut(s)	160
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	291
BspEI	TCCGGA	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	358
BspPI	GGATC	3 cut(s)	61, 98, 376
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	160, 524
BssMI	GATC	3 cut(s)	66, 103, 368
BssT1I	CCWWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	528
Bst6I	CTCTTC	2 cut(s)	75, 315
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	15, 278
BstDSI	CCRYGG	2 cut(s)	160, 524
BstKTI	GATC	3 cut(s)	69, 106, 371
BstMAI	GTCTC	2 cut(s)	284, 335
BstMBI	GATC	3 cut(s)	66, 103, 368
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSLI	GKGCMC	1 cut(s)	134
BstV2I	GAAGAC	2 cut(s)	34, 60
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	2 cut(s)	160, 524
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	77
CciI	TCATGA	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	510
CviAII	CATG	2 cut(s)	161, 359
CviJI	RGCY	9 cut(s)	14, 98, 159, 167, 241, 245, 308, 347, 554
CviKI_1	RGCY	9 cut(s)	14, 98, 159, 167, 241, 245, 308, 347, 554
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	2 cut(s)	15, 278
DpnI	GATC	3 cut(s)	68, 105, 370
DpnII	GATC	3 cut(s)	66, 103, 368
Eam1104I	CTCTTC	2 cut(s)	75, 315
EarI	CTCTTC	2 cut(s)	75, 315
Eco130I	CCWWGG	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	2 cut(s)	164, 362
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	2 cut(s)	160, 358
FspBI	CTAG	2 cut(s)	110, 378
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	2 cut(s)	164, 362
HinfI	GANTC	2 cut(s)	323, 362
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	113, 391
Hpy166II	GTNNAC	2 cut(s)	466, 491
Hpy188I	TCNGA	2 cut(s)	79, 281
Hpy188III	TCNNGA	4 cut(s)	145, 359, 366, 431
Hpy8I	GTNNAC	2 cut(s)	466, 491
HpyAV	CCTTC	2 cut(s)	79, 144
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4IV	ACGT	2 cut(s)	212, 508
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	15, 278
HpySE526I	ACGT	2 cut(s)	212, 508
Hsp92II	CATG	2 cut(s)	164, 362
Kpn2I	TCCGGA	1 cut(s)	365
Kzo9I	GATC	3 cut(s)	66, 103, 368
LpnPI	CCDG	7 cut(s)	84, 84, 227, 322, 379, 415, 416
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	110, 378
MaeII	ACGT	2 cut(s)	212, 508
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	68, 105, 370
MboI	GATC	3 cut(s)	66, 103, 368
MboII	GAAGA	8 cut(s)	17, 34, 65, 92, 162, 165, 196, 332
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	6 cut(s)	114, 190, 285, 495, 562, 569
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	5 cut(s)	4, 117, 262, 331, 338
MroI	TCCGGA	1 cut(s)	365
MseI	TTAA	2 cut(s)	248, 583
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	3 cut(s)	66, 103, 368
NlaIII	CATG	2 cut(s)	164, 362
PagI	TCATGA	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	362
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	509
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	248, 583
Sau3AI	GATC	3 cut(s)	66, 103, 368
SchI	GAGTC	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	6 cut(s)	100, 215, 336, 349, 404, 511
SfaNI	GCATC	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	145, 329
SmoI	CTYRAG	2 cut(s)	145, 329
Sse9I	AATT	6 cut(s)	114, 190, 285, 495, 562, 569
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	2 cut(s)	110, 378
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	528
TaiI	ACGT	2 cut(s)	215, 511
TaqI	TCGA	1 cut(s)	225
TasI	AATT	6 cut(s)	114, 190, 285, 495, 562, 569
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	2 cut(s)	248, 583
Tru9I	TTAA	2 cut(s)	248, 583
TscAI	CASTG	1 cut(s)	78
TspDTI	ATGAA	5 cut(s)	47, 66, 197, 347, 375
TspRI	CASTG	1 cut(s)	78
XapI	RAATTY	3 cut(s)	190, 495, 569
XspI	CTAG	2 cut(s)	110, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.