Rorug07G0047500

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016080
Physical Location & Seq
Forward (+)
3449500 .. 3449940
441 bp
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UTR
Exon/CDS
Intron
Rorug07G0047500.1

Sequence Viewer

Length: 441 bp
ATGATAATAGAAAGTCACCTTCTATCTGATATTACCTACACCCATCAGGCTGAGAATATAAATCTAGACATCAACAGGGTGGTGGGTTATCGTCACTGGTGCAACAAACTGTGGAATGCAGTAAGGTTTGCTATGCTCAAACTCGGGGATGGTTATGTTCCACCTCCGAGTGAAATTAATCTGAATGAGCTTCCATTCATTTGCCAGTGGATCCTCTCAGTACTAAACAAAGCAATTGACAAAACTGTTTCGTCAATGGAGTCCTATAAGCTGTCAGATGCAGCCAAGGCTGTGTATGGTTGGTGGCAGAATCAGTTGTGTGATATTTTCATCGAAGCCATCAAGCCATACTTTGCTGGAATGCTGGTAATGATCCAAAGTTTGCAGCAGAAAGGGAGTTTGCGAAACACACTCTTTGGCTATGTCTTGACACTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

146

Amino Acids

16.77

Weight (kDa)

6.27

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Anticodon_1 PF08264 69 - 120 2e-11 Anticodon-binding domain of tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23750 AT5G23750 AT5G23750
fragaria_vesca FvH4_5g02000 FvH4_5g02000
malus_domestica MD14G1099200.v1.1
prunus_persica Prupe.5G096200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198371
rosa_laevigata RLG00000003872
rosa_rugosa Rorug07G0047400 Rorug07G0047500
rosa_samantha Rh7AG170800 Rh7CG180500 Rh7DG173100
rosa_wichuraiana Rw7G014940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 205, 218, 367
AfaI GTAC 1 cut(s) 222
AluBI AGCT 2 cut(s) 190, 271
AluI AGCT 2 cut(s) 190, 271
AlwI GGATC 3 cut(s) 205, 218, 367
Ama87I CYCGRG 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 281, 385
AseI ATTAAT 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 143
BamHI GGATCC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 293, 397
BccI CCATC 3 cut(s) 51, 143, 347
BfaI CTAG 1 cut(s) 65
BisI GCNGC 2 cut(s) 282, 386
BlsI GCNGC 2 cut(s) 283, 387
BmcAI AGTACT 1 cut(s) 222
BmeT110I CYCGRG 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 212
BmsI GCATC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 285
Bse1I ACTGG 3 cut(s) 101, 205, 438
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 42, 231
BseNI ACTGG 3 cut(s) 101, 205, 438
BseXI GCAGC 2 cut(s) 293, 397
BsiHKCI CYCGRG 1 cut(s) 143
BsmI GAATGC 2 cut(s) 121, 366
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 2 cut(s) 210, 372
BspCNI CTCAG 2 cut(s) 43, 230
BspLI GGNNCC 1 cut(s) 212
BspPI GGATC 3 cut(s) 205, 218, 367
BsrI ACTGG 3 cut(s) 101, 205, 438
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 2 cut(s) 210, 372
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 111, 247
BstDEI CTNAG 2 cut(s) 51, 217
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 2 cut(s) 213, 375
BstMBI GATC 2 cut(s) 210, 372
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstV1I GCAGC 2 cut(s) 293, 397
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 3 cut(s) 94, 212, 431
Csp6I GTAC 1 cut(s) 221
CviJI RGCY 8 cut(s) 50, 190, 271, 284, 290, 338, 346, 420
CviKI_1 RGCY 8 cut(s) 50, 190, 271, 284, 290, 338, 346, 420
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 2 cut(s) 51, 217
DpnI GATC 2 cut(s) 212, 374
DpnII GATC 2 cut(s) 210, 372
Eco130I CCWWGG 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaiI YATR 7 cut(s) 59, 134, 156, 267, 297, 349, 423
FalI AAGNNNNNCTT 2 cut(s) 335, 367
Fnu4HI GCNGC 2 cut(s) 282, 386
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 2 cut(s) 282, 386
FspBI CTAG 1 cut(s) 65
GluI GCNGC 2 cut(s) 282, 386
HinfI GANTC 2 cut(s) 260, 310
HphI GGTGA 1 cut(s) 8
Hpy188I TCNGA 4 cut(s) 28, 168, 183, 277
Hpy188III TCNNGA 2 cut(s) 65, 427
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 111, 247
HpyCH4V TGCA 4 cut(s) 102, 119, 281, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 51, 217
Kzo9I GATC 2 cut(s) 210, 372
LpnPI CCDG 7 cut(s) 32, 61, 82, 218, 342, 350, 419
Lsp1109I GCAGC 2 cut(s) 293, 397
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 14, 92
MalI GATC 2 cut(s) 212, 374
MboI GATC 2 cut(s) 210, 372
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 1 cut(s) 210
MluCI AATT 2 cut(s) 174, 234
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 2 cut(s) 174, 224
MseI TTAA 2 cut(s) 177, 439
MunI CAATTG 1 cut(s) 234
Mva1269I GAATGC 2 cut(s) 121, 366
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 2 cut(s) 210, 372
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 2 cut(s) 14, 92
PctI GAATGC 2 cut(s) 121, 366
PfeI GAWTC 1 cut(s) 310
PkrI GCNGC 2 cut(s) 283, 387
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PshBI ATTAAT 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 210
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 177, 439
SatI GCNGC 2 cut(s) 282, 386
Sau3AI GATC 2 cut(s) 210, 372
ScaI AGTACT 1 cut(s) 222
SchI GAGTC 1 cut(s) 269
SetI ASST 6 cut(s) 21, 38, 128, 166, 192, 273
SfaNI GCATC 1 cut(s) 268
Sse9I AATT 2 cut(s) 174, 234
SspMI CTAG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 111, 247
TaqI TCGA 1 cut(s) 333
TasI AATT 2 cut(s) 174, 234
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 177, 439
Tru9I TTAA 2 cut(s) 177, 439
TscAI CASTG 3 cut(s) 101, 212, 438
TseFI GTSAC 2 cut(s) 14, 92
TseI GCWGC 2 cut(s) 281, 385
Tsp45I GTSAC 2 cut(s) 14, 92
TspDTI ATGAA 2 cut(s) 187, 319
TspRI CASTG 3 cut(s) 101, 212, 438
VspI ATTAAT 1 cut(s) 177
XbaI TCTAGA 1 cut(s) 64
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.