FvH4_5g02000

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016080
Physical Location & Seq
Forward (+)
1244154 .. 1245633
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02000.t2

Sequence Viewer

Length: 564 bp
ATGGAAGAGGAGACCAAGAAAGAACCACCAATGAACTATGTCTTCGTCGATACAGAGAAGAGTGTGATCCCAGTTTCTGAAGAGAAGGCATCATCAGCTGGTGAACCTCTTGCAATTGTCAAAGAGAATGTAGATCATCCTGCTGCAAAGAAAGGTATAAGAAGTTCAACTGAGAAAGATGTAATGTATGCAGAAATTGAAACCGAGAAAAGGCTGGCCTTAATCAAAGCATGGGAAGAAAGTGAAAAGACAAAAGTAGAGAACAGGGCATATAAAAGGATGTCTGCAGTAGGATTATGGGAAGAAAACAAAAAATCTTCTGTTGAAGCAAAACTCAGAAAAATTGAGGAGAAGTTCGAAAGAAAGAAGGCAGAATATGTTGAGAAAATGAAGAATAAAGTGGCTGAAATTCACAAGGCTAGTGAAGAAAAGAGAGCACTTATTGAAGCCACACAAAGAGAAGAGTCTCTCAAGGTGGCGGAGGCAGCTTCAAAGTTTCGTGAATCCAGATCTACGCCTAAGAGACTGTTTGTGTGCTTCACATGTGCTAACAGTGTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

188

Amino Acids

21.43

Weight (kDa)

8.66

Isoelectric Point (pI)

67.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 71 - 175 6.7e-29 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23750 AT5G23750 AT5G23750
fragaria_vesca FvH4_5g02000 FvH4_5g02000
malus_domestica MD14G1099200.v1.1
prunus_persica Prupe.5G096200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198371
rosa_laevigata RLG00000003872
rosa_rugosa Rorug07G0047400 Rorug07G0047500
rosa_samantha Rh7AG170800 Rh7CG180500 Rh7DG173100
rosa_wichuraiana Rw7G014940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 479
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 542
AgsI TTSAA 5 cut(s) 168, 200, 326, 446, 492
AluBI AGCT 2 cut(s) 98, 488
AluI AGCT 2 cut(s) 98, 488
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 3 cut(s) 5, 471, 517
AlwI GGATC 1 cut(s) 61
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 2 cut(s) 143, 485
ApoI RAATTY 1 cut(s) 408
AsuHPI GGTGA 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 2 cut(s) 130, 497
BcoDI GTCTC 3 cut(s) 5, 471, 517
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 2 cut(s) 285, 560
BglII AGATCT 1 cut(s) 509
BisI GCNGC 2 cut(s) 144, 486
BlsI GCNGC 2 cut(s) 145, 487
BmrI ACTGGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 455
BsaI GGTCTC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 71
BseGI GGATG 2 cut(s) 136, 285
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 162, 349
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 2 cut(s) 23, 362
BseXI GCAGC 2 cut(s) 130, 497
BshFI GGCC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 3 cut(s) 5, 471, 517
BsnI GGCC 1 cut(s) 218
Bso31I GGTCTC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 3 cut(s) 66, 133, 509
BspACI CCGC 1 cut(s) 479
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 2 cut(s) 163, 348
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 1 cut(s) 61
BspT104I TTCGAA 1 cut(s) 357
BspTNI GGTCTC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 71
BssMI GATC 3 cut(s) 66, 133, 509
Bst4CI ACNGT 2 cut(s) 528, 554
Bst6I CTCTTC 3 cut(s) 53, 75, 456
BstBI TTCGAA 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 3 cut(s) 171, 335, 519
BstF5I GGATG 2 cut(s) 136, 285
BstKTI GATC 3 cut(s) 69, 136, 512
BstMAI GTCTC 3 cut(s) 5, 471, 517
BstMBI GATC 3 cut(s) 66, 133, 509
BstMWI GCNNNNNNNGC 2 cut(s) 95, 485
BstNSI RCATGY 1 cut(s) 546
BstSFI CTRYAG 2 cut(s) 285, 560
BstV1I GCAGC 2 cut(s) 130, 497
BstV2I GAAGAC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
BsuRI GGCC 1 cut(s) 218
BtsCI GGATG 2 cut(s) 136, 285
BtsIMutI CAGTG 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 216
CaiI CAGNNNCTG 1 cut(s) 77
CviAII CATG 2 cut(s) 231, 543
CviJI RGCY 7 cut(s) 98, 214, 218, 404, 419, 449, 488
CviKI_1 RGCY 7 cut(s) 98, 214, 218, 404, 419, 449, 488
DdeI CTNAG 3 cut(s) 171, 335, 519
DpnI GATC 3 cut(s) 68, 135, 511
DpnII GATC 3 cut(s) 66, 133, 509
Eam1104I CTCTTC 3 cut(s) 53, 75, 456
EarI CTCTTC 3 cut(s) 53, 75, 456
EciI GGCGGA 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 99
FaeI CATG 2 cut(s) 234, 546
FatI CATG 2 cut(s) 230, 542
Fnu4HI GCNGC 2 cut(s) 144, 486
FokI GGATG 2 cut(s) 123, 292
Fsp4HI GCNGC 2 cut(s) 144, 486
FspBI CTAG 1 cut(s) 420
GluI GCNGC 2 cut(s) 144, 486
HaeIII GGCC 1 cut(s) 218
Hin1II CATG 2 cut(s) 234, 546
HinfI GANTC 2 cut(s) 464, 503
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 79, 338
Hpy188III TCNNGA 2 cut(s) 500, 507
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 79, 361
HpyCH4III ACNGT 2 cut(s) 528, 554
HpyCH4V TGCA 4 cut(s) 113, 146, 191, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 485
HpyF3I CTNAG 3 cut(s) 171, 335, 519
Hsp92II CATG 2 cut(s) 234, 546
Kzo9I GATC 3 cut(s) 66, 133, 509
LpnPI CCDG 6 cut(s) 84, 84, 153, 200, 250, 520
Lsp1109I GCAGC 2 cut(s) 130, 497
LweI GCATC 1 cut(s) 98
MaeI CTAG 1 cut(s) 420
MalI GATC 3 cut(s) 68, 135, 511
MboI GATC 3 cut(s) 66, 133, 509
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 4 cut(s) 114, 195, 342, 408
MlyI GAGTC 1 cut(s) 473
MnlI CCTC 3 cut(s) 117, 340, 475
MseI TTAA 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 98
MunI CAATTG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 95, 485
NdeII GATC 3 cut(s) 66, 133, 509
NlaIII CATG 2 cut(s) 234, 546
NspI RCATGY 1 cut(s) 546
NspV TTCGAA 1 cut(s) 357
PciI ACATGT 1 cut(s) 542
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 2 cut(s) 145, 487
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PscI ACATGT 1 cut(s) 542
PsrI GAACNNNNNNTAC 2 cut(s) 148, 180
PstI CTGCAG 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 2 cut(s) 144, 486
Sau3AI GATC 3 cut(s) 66, 133, 509
SchI GAGTC 1 cut(s) 473
SduI GDGCHC 1 cut(s) 439
SetI ASST 5 cut(s) 100, 109, 157, 477, 490
SfaNI GCATC 1 cut(s) 98
SfcI CTRYAG 2 cut(s) 285, 560
SfuI TTCGAA 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 4 cut(s) 114, 195, 342, 408
SsiI CCGC 1 cut(s) 479
SspMI CTAG 1 cut(s) 420
TaaI ACNGT 2 cut(s) 528, 554
TaqI TCGA 2 cut(s) 48, 357
TasI AATT 4 cut(s) 114, 195, 342, 408
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 559
TseI GCWGC 2 cut(s) 143, 485
TspDTI ATGAA 2 cut(s) 47, 404
TspRI CASTG 1 cut(s) 559
XapI RAATTY 1 cut(s) 408
XceI RCATGY 1 cut(s) 546
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.