RchiOBHm_Chr7g0198371

Remorin, C-terminal region

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
16207127 .. 16207483
357 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17748

Sequence Viewer

Length: 165 bp
ATGTCTGCAGAAATCGAAACAGAGAAAAGGCTGGCCTTAATCAAAGCATGGGAAGAAAGTGAAAAGACAAAAGCGGAGAACAGGGCATATAAAAGGATGTCTGCAGTAGGTTTAATGGGAAGACAACAAGAAAACATACGTAGAGGCACAACTCAGAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

54

Amino Acids

6.27

Weight (kDa)

9.86

Isoelectric Point (pI)

88.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23750 AT5G23750 AT5G23750
fragaria_vesca FvH4_5g02000 FvH4_5g02000
malus_domestica MD14G1099200.v1.1
prunus_persica Prupe.5G096200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198371
rosa_laevigata RLG00000003872
rosa_rugosa Rorug07G0047400 Rorug07G0047500
rosa_samantha Rh7AG170800 Rh7CG180500 Rh7DG173100
rosa_wichuraiana Rw7G014940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AoxI GGCC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 127
BfmI CTRYAG 2 cut(s) 6, 102
BpiI GAAGAC 1 cut(s) 127
BsaAI YACGTR 1 cut(s) 140
BseGI GGATG 1 cut(s) 102
BshFI GGCC 1 cut(s) 35
BsnI GGCC 1 cut(s) 35
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 35
BspMAI CTGCAG 2 cut(s) 10, 106
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 102
BstSFI CTRYAG 2 cut(s) 6, 102
BstSNI TACGTA 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 33
CviAII CATG 1 cut(s) 48
CviJI RGCY 2 cut(s) 31, 35
CviKI_1 RGCY 2 cut(s) 31, 35
DdeI CTNAG 1 cut(s) 153
Eco105I TACGTA 1 cut(s) 140
FaeI CATG 1 cut(s) 51
FaiI YATR 4 cut(s) 49, 88, 90, 137
FatI CATG 1 cut(s) 47
FokI GGATG 1 cut(s) 109
HaeIII GGCC 1 cut(s) 35
Hin1II CATG 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 8, 104
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 1 cut(s) 51
LpnPI CCDG 2 cut(s) 17, 67
MaeII ACGT 1 cut(s) 139
MboII GAAGA 2 cut(s) 65, 132
MluCI AATT 1 cut(s) 160
MnlI CCTC 1 cut(s) 137
MseI TTAA 2 cut(s) 38, 113
NlaIII CATG 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 140
PstI CTGCAG 2 cut(s) 10, 106
SaqAI TTAA 2 cut(s) 38, 113
SetI ASST 2 cut(s) 112, 142
SfcI CTRYAG 2 cut(s) 6, 102
SgeI CNNG 4 cut(s) 44, 60, 94, 140
SnaBI TACGTA 1 cut(s) 140
Sse9I AATT 1 cut(s) 160
SsiI CCGC 1 cut(s) 74
TaiI ACGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 15
TasI AATT 1 cut(s) 160
Tru1I TTAA 2 cut(s) 38, 113
Tru9I TTAA 2 cut(s) 38, 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.