RLG00000003872

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016080
Physical Location & Seq
Forward (+)
53796228 .. 53801856
5629 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003872

Sequence Viewer

Length: 843 bp
ATGGTGGCGACGGCGATCGGGAAGACAGAGCTGCACTCTGGCTGGCTCGGCGCCCAGGACAGGGATGTCACCATCACCGGTGAGCAGCTCACCAGCTCTCCTGGGGTTGAGGCCCCCACCCAGGAGCCTCCAGGAGGCTTTGCTGGACCAGTGATTCATGGCGACGTGAAGCCCAACAAGGTGCTGCTAGACTCGAATTGCAATGTAAAGATTGGGGATTTCGGGCCTGCGAGGGTTAATTTGGAACTCTGGCTAAGTTCATGGACTACTTATATGGAAGAGGAGGCTAAGAAAGAACCAGCAATGAACTATGTCTTCGTTGATGAAGAGAAGAGTATGATCCCAGTGTCTGAAGATAAGGCATCATCAGCTGGTGATCCTCTAGCAATTGTCAAAGCAGAGATTGCAGATCCTGCTGCAAAGAAAGGTATAAGTTCAATTGAAGGACATGTAATGTATACAGAAATCGAAACAGAGAAAAGGCTGGCCTTAATCAAAGCATGGGAAGAAGGTGAAAAGACAAAAGCGGAGAACAGGATGTCTGCAGTAGGTTTATGGGAAGACAACCAGAAAACATACGTAGAGGCACAACTCAGAAAAATTGAGGAGAAGTTTGAAAGAAAGAAGGCAGAATATGCTGAGAAAATGAAGAATAAGTGGCTGAAATTCACAAGGCTGGAGAAGATTAGAGAGCACTTGTTGAAGCCAGACAAAGAGAAGAGTCCCTCAAGGTGGAGGAGACAGCTTCAAAGTTTCGTGAATCCGGATCTACGCCTAGTAGATTGTTTGGGTGCTTCACCTGTTCTAAAAATGTTCTATAGTTCTGGCAACCATCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

281

Amino Acids

31.47

Weight (kDa)

6.07

Isoelectric Point (pI)

58.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 160 - 220 1.2e-12 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016080)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23750 AT5G23750 AT5G23750
fragaria_vesca FvH4_5g02000 FvH4_5g02000
malus_domestica MD14G1099200.v1.1
prunus_persica Prupe.5G096200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0198371
rosa_laevigata RLG00000003872
rosa_rugosa Rorug07G0047400 Rorug07G0047500
rosa_samantha Rh7AG170800 Rh7CG180500 Rh7DG173100
rosa_wichuraiana Rw7G014940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 458
AccIII TCCGGA 1 cut(s) 763
AciI CCGC 1 cut(s) 527
AclWI GGATC 4 cut(s) 334, 371, 404, 774
AcsI RAATTY 1 cut(s) 665
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 51
AfiI CCNNNNNNNGG 5 cut(s) 60, 61, 121, 134, 732
AflIII ACRYGT 1 cut(s) 448
AgeI ACCGGT 1 cut(s) 77
AgsI TTSAA 5 cut(s) 438, 443, 617, 703, 749
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 4 cut(s) 54, 100, 120, 130
AluBI AGCT 5 cut(s) 31, 88, 96, 371, 745
AluI AGCT 5 cut(s) 31, 88, 96, 371, 745
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 1 cut(s) 733
AlwI GGATC 4 cut(s) 334, 371, 404, 774
AlwNI CAGNNNCTG 2 cut(s) 350, 413
Aor13HI TCCGGA 1 cut(s) 763
AoxI GGCC 3 cut(s) 111, 224, 486
ApeKI GCWGC 4 cut(s) 31, 85, 184, 416
ApoI RAATTY 1 cut(s) 665
AsiGI ACCGGT 1 cut(s) 77
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 112, 146, 224
AsuHPI GGTGA 7 cut(s) 61, 67, 82, 92, 386, 524, 789
AvaII GGWCC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 50
BbsI GAAGAC 3 cut(s) 29, 307, 567
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 4 cut(s) 18, 97, 171, 403
BccI CCATC 2 cut(s) 80, 840
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 4 cut(s) 56, 102, 122, 132
BcoDI GTCTC 1 cut(s) 733
BfaI CTAG 3 cut(s) 188, 383, 776
BfmI CTRYAG 2 cut(s) 543, 817
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 4 cut(s) 32, 86, 185, 417
BlsI GCNGC 4 cut(s) 33, 87, 186, 418
Bme1390I CCNGG 4 cut(s) 56, 102, 122, 132
Bme18I GGWCC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 112, 146, 224
BmiI GGNNCC 3 cut(s) 52, 114, 126
BmrFI CCNGG 4 cut(s) 56, 102, 122, 132
BmrI ACTGGG 1 cut(s) 338
BmsI GCATC 1 cut(s) 371
BmuI ACTGGG 1 cut(s) 338
BpiI GAAGAC 3 cut(s) 29, 307, 567
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 2 cut(s) 114, 698
BpuEI CTTGAG 1 cut(s) 712
BsaAI YACGTR 1 cut(s) 580
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 54, 101, 120
BsaWI WCCGGW 2 cut(s) 77, 763
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 61, 121, 134, 732
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 149, 344
Bse3DI GCAATG 2 cut(s) 208, 309
BseAI TCCGGA 1 cut(s) 763
BseBI CCWGG 4 cut(s) 56, 102, 122, 132
BseDI CCNNGG 3 cut(s) 54, 101, 120
BseGI GGATG 2 cut(s) 70, 543
BseLI CCNNNNNNNGG 5 cut(s) 60, 61, 121, 134, 732
BseMI GCAATG 2 cut(s) 208, 309
BseMII CTCAG 2 cut(s) 607, 630
BseNI ACTGG 2 cut(s) 149, 344
BseRI GAGGAG 3 cut(s) 296, 620, 751
BseXI GCAGC 4 cut(s) 18, 97, 171, 403
BsgI GTGCAG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 3 cut(s) 113, 226, 488
BshNI GGYRCC 1 cut(s) 50
BshTI ACCGGT 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 696
BsiSI CCGG 2 cut(s) 78, 764
BslFI GGGAC 1 cut(s) 708
BslI CCNNNNNNNGG 5 cut(s) 60, 61, 121, 134, 732
BsmAI GTCTC 1 cut(s) 733
BsmFI GGGAC 1 cut(s) 708
BsnI GGCC 3 cut(s) 113, 226, 488
Bsp1286I GDGCHC 1 cut(s) 696
Bsp13I TCCGGA 1 cut(s) 763
Bsp143I GATC 5 cut(s) 15, 339, 376, 409, 766
BspACI CCGC 1 cut(s) 527
BspANI GGCC 3 cut(s) 113, 226, 488
BspCNI CTCAG 2 cut(s) 606, 631
BspEI TCCGGA 1 cut(s) 763
BspLI GGNNCC 3 cut(s) 52, 114, 126
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 4 cut(s) 334, 371, 404, 774
BspT107I GGYRCC 1 cut(s) 50
BsrDI GCAATG 2 cut(s) 208, 309
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 2 cut(s) 149, 344
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 54, 101, 120
BssMI GATC 5 cut(s) 15, 339, 376, 409, 766
BssNAI GTATAC 1 cut(s) 459
BssNI GRCGYC 1 cut(s) 51
Bst1107I GTATAC 1 cut(s) 459
Bst2UI CCWGG 4 cut(s) 56, 102, 122, 132
Bst6I CTCTTC 4 cut(s) 273, 321, 326, 713
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 3 cut(s) 404, 413, 635
BstBAI YACGTR 1 cut(s) 580
BstC8I GCNNGC 3 cut(s) 44, 228, 486
BstDEI CTNAG 4 cut(s) 254, 288, 593, 639
BstENI CCTNNNNNAGG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 70, 543
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 5 cut(s) 18, 342, 379, 412, 769
BstMAI GTCTC 1 cut(s) 733
BstMBI GATC 5 cut(s) 15, 339, 376, 409, 766
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 5 cut(s) 48, 368, 404, 413, 635
BstNI CCWGG 4 cut(s) 56, 102, 122, 132
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 4 cut(s) 54, 100, 120, 130
BstSFI CTRYAG 2 cut(s) 543, 817
BstSNI TACGTA 1 cut(s) 580
BstV1I GCAGC 4 cut(s) 18, 97, 171, 403
BstV2I GAAGAC 3 cut(s) 29, 307, 567
BstX2I RGATCY 2 cut(s) 409, 766
BstYI RGATCY 2 cut(s) 409, 766
BstZ17I GTATAC 1 cut(s) 459
BsuRI GGCC 3 cut(s) 113, 226, 488
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 70, 543
BtsIMutI CAGTG 2 cut(s) 156, 351
Cac8I GCNNGC 3 cut(s) 44, 228, 486
CaiI CAGNNNCTG 2 cut(s) 350, 413
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 3 cut(s) 112, 146, 224
CspAI ACCGGT 1 cut(s) 77
CviAII CATG 4 cut(s) 158, 261, 449, 501
DdeI CTNAG 4 cut(s) 254, 288, 593, 639
DinI GGCGCC 1 cut(s) 52
DpnI GATC 5 cut(s) 17, 341, 378, 411, 768
DpnII GATC 5 cut(s) 15, 339, 376, 409, 766
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
Eam1104I CTCTTC 4 cut(s) 273, 321, 326, 713
EarI CTCTTC 4 cut(s) 273, 321, 326, 713
Eco105I TACGTA 1 cut(s) 580
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 372
EcoNI CCTNNNNNAGG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 4 cut(s) 54, 100, 120, 130
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
FaeI CATG 4 cut(s) 161, 264, 452, 504
FaqI GGGAC 1 cut(s) 708
FatI CATG 4 cut(s) 157, 260, 448, 500
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 4 cut(s) 32, 86, 185, 417
FokI GGATG 2 cut(s) 77, 550
Fsp4HI GCNGC 4 cut(s) 32, 86, 185, 417
FspBI CTAG 3 cut(s) 188, 383, 776
GlaI GCGC 1 cut(s) 52
GluI GCNGC 4 cut(s) 32, 86, 185, 417
GsuI CTGGAG 2 cut(s) 114, 698
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 3 cut(s) 113, 226, 488
HapII CCGG 2 cut(s) 78, 764
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 4 cut(s) 161, 264, 452, 504
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 4 cut(s) 154, 191, 721, 760
HpaII CCGG 2 cut(s) 78, 764
HphI GGTGA 7 cut(s) 61, 67, 82, 92, 386, 524, 789
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 2 cut(s) 352, 596
Hpy188III TCNNGA 3 cut(s) 19, 757, 764
Hpy8I GTNNAC 1 cut(s) 459
Hpy99I CGWCG 2 cut(s) 13, 167
HpyAV CCTTC 3 cut(s) 437, 503, 619
HpyCH4IV ACGT 2 cut(s) 165, 579
HpyCH4V TGCA 5 cut(s) 34, 201, 407, 419, 545
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 368, 404, 413, 635
HpyF3I CTNAG 4 cut(s) 254, 288, 593, 639
HpySE526I ACGT 2 cut(s) 165, 579
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 4 cut(s) 161, 264, 452, 504
HspAI GCGC 1 cut(s) 51
KasI GGCGCC 1 cut(s) 50
Kpn2I TCCGGA 1 cut(s) 763
Kzo9I GATC 5 cut(s) 15, 339, 376, 409, 766
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 4 cut(s) 18, 97, 171, 403
LweI GCATC 1 cut(s) 371
MaeI CTAG 3 cut(s) 188, 383, 776
MaeII ACGT 2 cut(s) 165, 579
MaeIII GTNAC 1 cut(s) 67
MalI GATC 5 cut(s) 17, 341, 378, 411, 768
MboI GATC 5 cut(s) 15, 339, 376, 409, 766
MfeI CAATTG 2 cut(s) 387, 438
MflI RGATCY 2 cut(s) 409, 766
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 6 cut(s) 196, 238, 387, 438, 600, 665
Mly113I GGCGCC 1 cut(s) 51
MlyI GAGTC 2 cut(s) 185, 730
MroI TCCGGA 1 cut(s) 763
MseI TTAA 2 cut(s) 237, 491
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 2 cut(s) 78, 764
MspR9I CCNGG 4 cut(s) 56, 102, 122, 132
MunI CAATTG 2 cut(s) 387, 438
MvaI CCWGG 4 cut(s) 56, 102, 122, 132
MwoI GCNNNNNNNGC 5 cut(s) 48, 368, 404, 413, 635
NarI GGCGCC 1 cut(s) 51
NdeII GATC 5 cut(s) 15, 339, 376, 409, 766
NlaIII CATG 4 cut(s) 161, 264, 452, 504
NlaIV GGNNCC 3 cut(s) 52, 114, 126
NmeAIII GCCGAG 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 452
PciI ACATGT 1 cut(s) 448
PfeI GAWTC 2 cut(s) 154, 760
PfoI TCCNGGA 1 cut(s) 130
PinAI ACCGGT 1 cut(s) 77
PkrI GCNGC 4 cut(s) 33, 87, 186, 418
Ple19I CGATCG 1 cut(s) 18
PleI GAGTC 2 cut(s) 185, 729
PluTI GGCGCC 1 cut(s) 54
PpsI GAGTC 2 cut(s) 185, 729
Ppu21I YACGTR 1 cut(s) 580
PscI ACATGT 1 cut(s) 448
Psp6I CCWGG 4 cut(s) 54, 100, 120, 130
PspGI CCWGG 4 cut(s) 54, 100, 120, 130
PspN4I GGNNCC 3 cut(s) 52, 114, 126
PspPI GGNCC 3 cut(s) 112, 146, 224
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 2 cut(s) 350, 413
PsuI RGATCY 2 cut(s) 409, 766
PvuI CGATCG 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 371
SaqAI TTAA 2 cut(s) 237, 491
SatI GCNGC 4 cut(s) 32, 86, 185, 417
Sau3AI GATC 5 cut(s) 15, 339, 376, 409, 766
Sau96I GGNCC 3 cut(s) 112, 146, 224
SchI GAGTC 2 cut(s) 185, 730
ScrFI CCNGG 4 cut(s) 56, 102, 122, 132
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 1 cut(s) 371
SfcI CTRYAG 2 cut(s) 543, 817
SfoI GGCGCC 1 cut(s) 52
SgrAI CRCCGGYG 1 cut(s) 77
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 727
SmoI CTYRAG 1 cut(s) 727
SnaBI TACGTA 1 cut(s) 580
Sse9I AATT 6 cut(s) 196, 238, 387, 438, 600, 665
SsiI CCGC 1 cut(s) 527
SspDI GGCGCC 1 cut(s) 50
SspMI CTAG 3 cut(s) 188, 383, 776
StyD4I CCNGG 4 cut(s) 54, 100, 120, 130
TaiI ACGT 2 cut(s) 168, 582
TaqI TCGA 2 cut(s) 194, 468
TasI AATT 6 cut(s) 196, 238, 387, 438, 600, 665
TfiI GAWTC 2 cut(s) 154, 760
Tru1I TTAA 2 cut(s) 237, 491
Tru9I TTAA 2 cut(s) 237, 491
TscAI CASTG 2 cut(s) 156, 351
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 4 cut(s) 31, 85, 184, 416
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 5 cut(s) 146, 249, 320, 339, 662
TspRI CASTG 2 cut(s) 156, 351
VpaK11BI GGWCC 1 cut(s) 146
XagI CCTNNNNNAGG 1 cut(s) 132
XapI RAATTY 1 cut(s) 665
XceI RCATGY 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 458
XspI CTAG 3 cut(s) 188, 383, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.