Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009930

Physical Location & Seq

Genomic Coordinates Reverse (-)

8281976 .. 8284126

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24318.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGAATTATGTGCTACCATTTTTCTCTCTTTCTATGTTTACTATAGTCGGAGTTCTCTTAATCCTTTCAACAGGAAGTGAAGCGAGTATTGGTGTAAACTACGGCACACTAGCTAACAACCTCCCTCCACCGCAACAAGTAGCGGAGTTCCTCCTCCATTCCACCGTCATTAACCGCATCCGCCTCTTCGACACCGATCCTCAAATCCTCCAAGCCTTCGCTAACACCGGTATCGCCGTTACCGTAACCGTCCCCAACGACCAAATCCCACACTTAACCAACCTCTCCTCCGCCAAACAATGGATCTCCGATCACATCCAACCTCACTTCCCATCCACAAACATCATCCGTATCCTCGTCGGAAACGAAGTCATCTCCACCGCCGATCACCTCCTCATCAGAACCTTAATCCCGGCTATGCAATCTCTCCACACCGCCTTAGTCTCCGCCTCTCTCCACCGTCGAATTCAAATCTCAACGCCACATTCTTTAGGAACCCTCACTAATTCAACCCCACCTTCTTCCGCTAAGTTCCGGCGAGGCTACGACGCCCAAGTCCTCAAGCCTCTCCTTAGCTTCCTCCGTTCTACTTCTTCGCCGTTCGTCGTGAATCCTTATCCCTTCTTCGGTTATTCAATCGAAACTCTCGATTTCGCTCTCTTTAGACCTAATCCAGGCTTATTTGATCAACACACGAAGCTTCTCTACACAAACATGCTCGATGCTCAGCTTGATTCGGTTTATTCCGCCATGGATAAATTAGGGTTTTCAGATGTTGAGATTGTGATTGGTGAAATTGGATGGCCATCGGAGGGAGATATAGATCAGATCGGAGTTGATGTTGATACAGCGGCTGAGTTTAACAAGAATCTGATTGCGCGTGTAGATTCCGGTACCGGAACTCCATTGATGCCAAATCGGACTTTTGAAACTTACATTTTCGCGCTCTTCAATGAAAATCTCAAATCGGGACCAACGTCGGAGCGTAATTTCGGCATCTTCCGATCAGATCTGACACCGATTTACGACATCGGAATCCTCCGGCCAACGTTTAGATCATCGGATCCGGTTTACAATCCTCGATCACCGGTTAGAGGATCGTCGTCGAAGCGGTGGTGCGTGACAAAGGCCGGTGCAGAGACGGTGGCTTTACAAAGGAACATTGATTACGTATGTGGGTTGGGTTTGGATTGTAGGCCCATTAATGAAGGTGGGCTTTGTTACTTGCCGAATACAGTGAAAGCCCATTCGAAGTACGCAATGAACTTGTATTACCAAACTATGGAGAAACACGAGTTCGATTGCGATTTCGACAACACTGGAGAGATAACTACGATTGATCCCAGTTATGGAAATTGTGAATATCAGGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

458

Amino Acids

50.77

Weight (kDa)

5.55

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 205	2e-51	Glycosyl hydrolases family 17
X8	PF07983	233 - 302	8.6e-19	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24318 AT5G24318 AT5G24318 AT5G24318
fragaria_vesca	FvH4_7g32100
malus_domestica	MD01G1223700.v1.1 MD07G1294400.v1.1
prunus_persica	Prupe.2G314200_v2.0.a1
pyrus_communis	pycom07g26720
rosa_chinensis	RchiOBHm_Chr1g0381691
rosa_laevigata	RLG00000026214
rosa_multiflora	Rmu_co8442059.1_g000001 Rmu_sc0004579.1_g000005 Rmu_ssc0000316.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278510
rosa_rugosa	Rorug01G0430400
rosa_samantha	Rh1AG453800 Rh1BG411000 Rh1CG425400 Rh1DG442800
rosa_wichuraiana	Rw1G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
Acc65I	GGTACC	1 cut(s)	893
AccB1I	GGYRCC	1 cut(s)	893
AccB7I	CCANNNNNTGG	2 cut(s)	300, 1282
AccII	CGCG	2 cut(s)	880, 944
AclI	AACGTT	1 cut(s)	1049
AclWI	GGATC	6 cut(s)	191, 311, 1058, 1071, 1105, 1334
AcoI	YGGCCR	2 cut(s)	803, 1043
AcsI	RAATTY	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	549
AfaI	GTAC	2 cut(s)	895, 1256
AfiI	CCNNNNNNNGG	7 cut(s)	300, 626, 674, 812, 1094, 1282, 1349
AgeI	ACCGGT	2 cut(s)	227, 1087
AgsI	TTSAA	6 cut(s)	69, 470, 510, 636, 929, 952
AjnI	CCWGG	1 cut(s)	673
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	4 cut(s)	113, 576, 700, 730
AluI	AGCT	4 cut(s)	113, 576, 700, 730
Alw26I	GTCTC	2 cut(s)	448, 1133
AlwI	GGATC	6 cut(s)	191, 311, 1058, 1071, 1105, 1334
AlwNI	CAGNNNCTG	1 cut(s)	854
AoxI	GGCC	4 cut(s)	803, 1043, 1128, 1196
ApoI	RAATTY	1 cut(s)	465
AseI	ATTAAT	1 cut(s)	1203
AsiGI	ACCGGT	2 cut(s)	227, 1087
Asp718I	GGTACC	1 cut(s)	893
AspLEI	GCGC	2 cut(s)	880, 946
AspS9I	GGNCC	2 cut(s)	971, 1197
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	3 cut(s)	380, 803, 1077
AsuII	TTCGAA	1 cut(s)	1250
AvaII	GGWCC	1 cut(s)	971
BaeI	ACNNNNGTAYC	2 cut(s)	214, 247
BalI	TGGCCA	1 cut(s)	805
BamHI	GGATCC	1 cut(s)	1063
BanI	GGYRCC	1 cut(s)	893
BarI	GAAGNNNNNNTAC	2 cut(s)	689, 721
BauI	CACGAG	1 cut(s)	1292
BccI	CCATC	3 cut(s)	340, 795, 814
BceAI	ACGGC	3 cut(s)	118, 221, 583
BciT130I	CCWGG	1 cut(s)	675
BciVI	GTATCC	1 cut(s)	362
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	448, 1133
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	42
BfuI	GTATCC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	1009
BisI	GCNGC	1 cut(s)	852
BlpI	GCTNAGC	1 cut(s)	726
BlsI	GCNGC	1 cut(s)	853
Bme1390I	CCNGG	2 cut(s)	413, 675
Bme18I	GGWCC	1 cut(s)	971
BmgT120I	GGNCC	2 cut(s)	971, 1197
BmiI	GGNNCC	4 cut(s)	496, 895, 972, 1065
BmrFI	CCNGG	2 cut(s)	413, 675
BmrI	ACTGGG	1 cut(s)	1338
BmsI	GCATC	4 cut(s)	186, 712, 900, 1005
BmuI	ACTGGG	1 cut(s)	1338
BoxI	GACNNNNGTC	1 cut(s)	976
BpmI	CTGGAG	1 cut(s)	1341
Bpu10I	CCTNAGC	1 cut(s)	572
Bpu1102I	GCTNAGC	1 cut(s)	726
Bpu14I	TTCGAA	1 cut(s)	1250
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	1171
BsaBI	GATNNNNATC	2 cut(s)	805, 822
BsaHI	GRCGYC	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	750
BsaWI	WCCGGW	5 cut(s)	227, 890, 896, 1066, 1087
BsaXI	ACNNNNNCTCC	6 cut(s)	272, 302, 825, 855, 886, 916
Bsc4I	CCNNNNNNNGG	7 cut(s)	300, 626, 674, 812, 1094, 1282, 1349
Bse118I	RCCGGY	3 cut(s)	227, 1087, 1130
Bse1I	ACTGG	2 cut(s)	1324, 1344
Bse3DI	GCAATG	1 cut(s)	1266
Bse8I	GATNNNNATC	2 cut(s)	805, 822
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	5 cut(s)	177, 315, 332, 345, 806
BseJI	GATNNNNATC	2 cut(s)	805, 822
BseLI	CCNNNNNNNGG	7 cut(s)	300, 626, 674, 812, 1094, 1282, 1349
BseMI	GCAATG	1 cut(s)	1266
BseMII	CTCAG	2 cut(s)	740, 846
BseNI	ACTGG	2 cut(s)	1324, 1344
BseRI	GAGGAG	3 cut(s)	143, 277, 383
BsgI	GTGCAG	1 cut(s)	1155
Bsh1236I	CGCG	2 cut(s)	880, 944
BshFI	GGCC	4 cut(s)	805, 1045, 1130, 1198
BshNI	GGYRCC	1 cut(s)	893
BshTI	ACCGGT	2 cut(s)	227, 1087
BsiSI	CCGG	9 cut(s)	228, 413, 535, 891, 897, 1042, 1067, 1088, 1131
BslFI	GGGAC	2 cut(s)	236, 984
BslI	CCNNNNNNNGG	7 cut(s)	300, 626, 674, 812, 1094, 1282, 1349
BsmAI	GTCTC	2 cut(s)	448, 1133
BsmBI	CGTCTC	1 cut(s)	1133
BsmFI	GGGAC	2 cut(s)	236, 984
BsnI	GGCC	4 cut(s)	805, 1045, 1130, 1198
Bsp119I	TTCGAA	1 cut(s)	1250
Bsp1720I	GCTNAGC	1 cut(s)	726
Bsp19I	CCATGG	1 cut(s)	750
BspANI	GGCC	4 cut(s)	805, 1045, 1130, 1198
BspCNI	CTCAG	2 cut(s)	739, 847
BspFNI	CGCG	2 cut(s)	880, 944
BspLI	GGNNCC	4 cut(s)	496, 895, 972, 1065
BspPI	GGATC	6 cut(s)	191, 311, 1058, 1071, 1105, 1334
BspQI	GCTCTTC	1 cut(s)	953
BspT104I	TTCGAA	1 cut(s)	1250
BspT107I	GGYRCC	1 cut(s)	893
BsrDI	GCAATG	1 cut(s)	1266
BsrFI	RCCGGY	3 cut(s)	227, 1087, 1130
BsrI	ACTGG	2 cut(s)	1324, 1344
BssAI	RCCGGY	3 cut(s)	227, 1087, 1130
BssECI	CCNNGG	1 cut(s)	750
BssNI	GRCGYC	1 cut(s)	549
BssSI	CACGAG	1 cut(s)	1292
BssT1I	CCWWGG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	1292
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	6 cut(s)	166, 244, 250, 461, 1144, 1237
Bst6I	CTCTTC	2 cut(s)	191, 953
BstACI	GRCGYC	1 cut(s)	549
BstBAI	YACGTR	1 cut(s)	1171
BstBI	TTCGAA	1 cut(s)	1250
BstDEI	CTNAG	5 cut(s)	439, 528, 572, 726, 855
BstDSI	CCRYGG	1 cut(s)	750
BstENI	CCTNNNNNAGG	1 cut(s)	672
BstF5I	GGATG	5 cut(s)	177, 315, 332, 345, 806
BstFNI	CGCG	2 cut(s)	880, 944
BstHHI	GCGC	2 cut(s)	880, 946
BstMAI	GTCTC	2 cut(s)	448, 1133
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	1 cut(s)	718
BstPAI	GACNNNNGTC	1 cut(s)	976
BstSCI	CCNGG	2 cut(s)	411, 673
BstSFI	CTRYAG	1 cut(s)	42
BstSNI	TACGTA	1 cut(s)	1171
BstUI	CGCG	2 cut(s)	880, 944
BstX2I	RGATCY	3 cut(s)	303, 1009, 1063
BstYI	RGATCY	3 cut(s)	303, 1009, 1063
BsuI	GTATCC	1 cut(s)	362
BsuRI	GGCC	4 cut(s)	805, 1045, 1130, 1198
BtgI	CCRYGG	1 cut(s)	750
BtsCI	GGATG	5 cut(s)	177, 315, 332, 345, 806
BtsIMutI	CAGTG	2 cut(s)	1242, 1317
CaiI	CAGNNNCTG	1 cut(s)	854
CfoI	GCGC	2 cut(s)	880, 946
Cfr10I	RCCGGY	3 cut(s)	227, 1087, 1130
Cfr13I	GGNCC	2 cut(s)	971, 1197
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	2 cut(s)	894, 1255
CspAI	ACCGGT	2 cut(s)	227, 1087
CviAII	CATG	2 cut(s)	715, 751
CviQI	GTAC	2 cut(s)	894, 1255
DdeI	CTNAG	5 cut(s)	439, 528, 572, 726, 855
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
EaeI	YGGCCR	2 cut(s)	803, 1043
Eam1104I	CTCTTC	2 cut(s)	191, 953
EarI	CTCTTC	2 cut(s)	191, 953
EciI	GGCGGA	4 cut(s)	170, 280, 436, 736
Eco105I	TACGTA	1 cut(s)	1171
Eco130I	CCWWGG	1 cut(s)	750
Eco47I	GGWCC	1 cut(s)	971
EcoNI	CCTNNNNNAGG	1 cut(s)	672
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	750
Esp3I	CGTCTC	1 cut(s)	1133
FaeI	CATG	2 cut(s)	718, 754
FalI	AAGNNNNNCTT	2 cut(s)	1200, 1232
FaqI	GGGAC	2 cut(s)	236, 984
FatI	CATG	2 cut(s)	714, 750
FbaI	TGATCA	1 cut(s)	685
Fnu4HI	GCNGC	1 cut(s)	852
FokI	GGATG	5 cut(s)	164, 302, 319, 332, 813
Fsp4HI	GCNGC	1 cut(s)	852
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	2 cut(s)	879, 945
GluI	GCNGC	1 cut(s)	852
GsuI	CTGGAG	1 cut(s)	1341
HaeIII	GGCC	4 cut(s)	805, 1045, 1130, 1198
HapII	CCGG	9 cut(s)	228, 413, 535, 891, 897, 1042, 1067, 1088, 1131
HgaI	GACGC	1 cut(s)	557
HhaI	GCGC	2 cut(s)	880, 946
Hin1I	GRCGYC	1 cut(s)	549
Hin1II	CATG	2 cut(s)	718, 754
Hin6I	GCGC	2 cut(s)	878, 944
HinP1I	GCGC	2 cut(s)	878, 944
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	5 cut(s)	610, 734, 868, 887, 1035
HpaII	CCGG	9 cut(s)	228, 413, 535, 891, 897, 1042, 1067, 1088, 1131
HphI	GGTGA	3 cut(s)	380, 803, 1077
Hpy166II	GTNNAC	3 cut(s)	39, 97, 1072
Hpy188III	TCNNGA	3 cut(s)	607, 647, 969
Hpy8I	GTNNAC	3 cut(s)	39, 97, 1072
Hpy99I	CGWCG	7 cut(s)	362, 465, 551, 608, 982, 1105, 1108
HpyAV	CCTTC	4 cut(s)	226, 528, 631, 1202
HpyCH4III	ACNGT	6 cut(s)	166, 244, 250, 461, 1144, 1237
HpyCH4IV	ACGT	3 cut(s)	977, 1049, 1170
HpyCH4V	TGCA	2 cut(s)	421, 1136
HpyF3I	CTNAG	5 cut(s)	439, 528, 572, 726, 855
HpySE526I	ACGT	3 cut(s)	977, 1049, 1170
Hsp92I	GRCGYC	1 cut(s)	549
Hsp92II	CATG	2 cut(s)	718, 754
HspAI	GCGC	2 cut(s)	878, 944
KpnI	GGTACC	1 cut(s)	897
Ksp22I	TGATCA	1 cut(s)	685
LguI	GCTCTTC	1 cut(s)	953
LmnI	GCTCC	1 cut(s)	982
LweI	GCATC	4 cut(s)	186, 712, 900, 1005
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	3 cut(s)	977, 1049, 1170
MaeIII	GTNAC	4 cut(s)	238, 244, 1120, 1220
MboII	GAAGA	6 cut(s)	178, 513, 585, 616, 940, 991
MflI	RGATCY	3 cut(s)	303, 1009, 1063
MlsI	TGGCCA	1 cut(s)	805
MluCI	AATT	8 cut(s)	4, 465, 505, 758, 795, 988, 1354, 1372
MluNI	TGGCCA	1 cut(s)	805
MmeI	TCCRAC	4 cut(s)	28, 340, 343, 960
Mox20I	TGGCCA	1 cut(s)	805
MscI	TGGCCA	1 cut(s)	805
MseI	TTAA	6 cut(s)	59, 171, 275, 407, 861, 1203
MslI	CAYNNNNRTG	1 cut(s)	713
Msp20I	TGGCCA	1 cut(s)	805
MspA1I	CMGCKG	1 cut(s)	851
MspI	CCGG	9 cut(s)	228, 413, 535, 891, 897, 1042, 1067, 1088, 1131
MspR9I	CCNGG	2 cut(s)	413, 675
MvaI	CCWGG	1 cut(s)	675
MvnI	CGCG	2 cut(s)	880, 944
NciI	CCSGG	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	750
NlaIII	CATG	2 cut(s)	718, 754
NlaIV	GGNNCC	4 cut(s)	496, 895, 972, 1065
NmuCI	GTSAC	1 cut(s)	1120
NspI	RCATGY	1 cut(s)	718
NspV	TTCGAA	1 cut(s)	1250
PciSI	GCTCTTC	1 cut(s)	953
PcsI	WCGNNNNNNNCGW	4 cut(s)	240, 363, 645, 974
PfeI	GAWTC	5 cut(s)	610, 734, 868, 887, 1035
PflMI	CCANNNNNTGG	2 cut(s)	300, 1282
PinAI	ACCGGT	2 cut(s)	227, 1087
PkrI	GCNGC	1 cut(s)	853
Ppu21I	YACGTR	1 cut(s)	1171
PshAI	GACNNNNGTC	1 cut(s)	976
PshBI	ATTAAT	1 cut(s)	1203
Psp1406I	AACGTT	1 cut(s)	1049
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	4 cut(s)	496, 895, 972, 1065
PspPI	GGNCC	2 cut(s)	971, 1197
PsrI	GAACNNNNNNTAC	4 cut(s)	1151, 1183, 1256, 1288
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	3 cut(s)	303, 1009, 1063
RsaI	GTAC	2 cut(s)	895, 1256
RsaNI	GTAC	2 cut(s)	894, 1255
RseI	CAYNNNNRTG	1 cut(s)	713
SapI	GCTCTTC	1 cut(s)	953
SaqAI	TTAA	6 cut(s)	59, 171, 275, 407, 861, 1203
SatI	GCNGC	1 cut(s)	852
Sau96I	GGNCC	2 cut(s)	971, 1197
ScrFI	CCNGG	2 cut(s)	413, 675
SfaNI	GCATC	4 cut(s)	186, 712, 900, 1005
SfcI	CTRYAG	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	1250
SinI	GGWCC	1 cut(s)	971
SmiMI	CAYNNNNRTG	1 cut(s)	713
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SnaBI	TACGTA	1 cut(s)	1171
Sse9I	AATT	8 cut(s)	4, 465, 505, 758, 795, 988, 1354, 1372
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	411, 673
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	6 cut(s)	166, 244, 250, 461, 1144, 1237
TaiI	ACGT	3 cut(s)	980, 1052, 1173
TasI	AATT	8 cut(s)	4, 465, 505, 758, 795, 988, 1354, 1372
TauI	GCSGC	1 cut(s)	854
TfiI	GAWTC	5 cut(s)	610, 734, 868, 887, 1035
Tru1I	TTAA	6 cut(s)	59, 171, 275, 407, 861, 1203
Tru9I	TTAA	6 cut(s)	59, 171, 275, 407, 861, 1203
TscAI	CASTG	2 cut(s)	1242, 1324
TseFI	GTSAC	1 cut(s)	1120
Tsp45I	GTSAC	1 cut(s)	1120
TspDTI	ATGAA	4 cut(s)	17, 969, 1221, 1277
TspGWI	ACGGA	2 cut(s)	338, 572
TspRI	CASTG	2 cut(s)	1242, 1324
Van91I	CCANNNNNTGG	2 cut(s)	300, 1282
VpaK11BI	GGWCC	1 cut(s)	971
VspI	ATTAAT	1 cut(s)	1203
XagI	CCTNNNNNAGG	1 cut(s)	672
XapI	RAATTY	1 cut(s)	465
XceI	RCATGY	1 cut(s)	718
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.