Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009930

Physical Location & Seq

Genomic Coordinates Forward (+)

1265306 .. 1267026

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026214

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGCAAATCCTCGGTCCGATTTTGCACTAACTGGAGGAACCACTATAGTTTTGCTGTTTCTTGCCTCAATCTTCAATGTTCAAGGAGTCCAAGGATCTATAGGAGTGAACTATGGCACAATGGCGAACGACCTCCCTCCACCGTCCCAAGTTGCACACTTCCTTCTACAATCCACCATCATCAACCGTGTTAGGCTCTTTGACACCAACCCTCAAATACTCCAAGCCTTTGCTCATTCCGGCATTCCACTAACAATCACTATCCCCAATGACCAAATCCCCCACTTCACCAAACTAAGGTTTGCCCAAAATTGGCTCAAAACCAATGTCATACCTTACACCCCGGCCACCAACGTAGTCCGCATCTTAATAGGAAATGAAGTACTCTCAACCGCCAACAAGTTGTTCATTGGGAACCTAGTCCCTGCTATGCTAACCCTTCACATGGCACTTGTAGATGCCTCTTTGGACCGCCAAATCAAAATCTCTACTCCACACTCTCTAGGCATTCTCTCAAGCTCAAGCCCGCCATCCACAGGTAAGTTTAGGCAAGGCTATGACACCCATGTCCTTAAACCACTACTCACTTTCTTGAGAATCACCAAGTCTCCTTTCATGGTAAACCCCTATCCATATTTCGGATACTCGGCGGACACGCTCAACTACGCACTTTTCCGACCAAATTCCGGTGTGGTTGATCCCAATACTAAACTCCTATACACCAACATGTTGGATGCACAATTAGATGCTATATATTCAGCTTTAAAGATTGTGGACTTTTCAGATCTCGAAATTGTTATAGCTGAAACGGGCTGGCCTTCAAAGGGTGATGCAGGCCAAGTTGGTGTTGACCCAAACAGTGCAGCGGACTACAACCGCAATCTCATTCGTCACATGACATCCGGTAATGGCACCCCATTGATGCCAAACCGGACTTTTGAGACTTACATCTTTGCCCTGTTCAATGAAAATCTCAAGCCCGGCCCAACATGTGAGAGATATTTTGGGCTTTTCCGACCTGACATGACGCCAGTCTACAATGTCGGAATCCTACGGCACACGGCTAGTTCGTCCGTACCCGGGAACGGGAGCTCAAGCCCACCGAAAAACCCAAATCGGTCGCCGCCACATGGAGGGAAGCAATATTGTTTGCCCAAAACTGGGGCTGACACAGAGGCCTTGCAGAAGAATATTGATTATGTTTGTGGGCTGGGATTTGATTGTGGCCCGATTAAACAAGGTGGGCCGTGCTTTATGCCCAACACAGTTAGAGCCCATGCAGCTTATGCCATGAACATTTACTATCAAGCAACGGGAAGGAACGGCTATGATTGCAATTTTGAGCAAACAGGAGCCACCACCAACGTCGATCCAAGCTATGGAAAATGCAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

466

Amino Acids

50.82

Weight (kDa)

8.8

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	34 - 348	1.7e-77	Glycosyl hydrolases family 17
X8	PF07983	382 - 451	3.6e-18	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24318 AT5G24318 AT5G24318 AT5G24318
fragaria_vesca	FvH4_7g32100
malus_domestica	MD01G1223700.v1.1 MD07G1294400.v1.1
prunus_persica	Prupe.2G314200_v2.0.a1
pyrus_communis	pycom07g26720
rosa_chinensis	RchiOBHm_Chr1g0381691
rosa_laevigata	RLG00000026214
rosa_multiflora	Rmu_co8442059.1_g000001 Rmu_sc0004579.1_g000005 Rmu_ssc0000316.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278510
rosa_rugosa	Rorug01G0430400
rosa_samantha	Rh1AG453800 Rh1BG411000 Rh1CG425400 Rh1DG442800
rosa_wichuraiana	Rw1G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	911
AccB7I	CCANNNNNTGG	1 cut(s)	1379
AccI	GTMKAC	1 cut(s)	1035
AciI	CCGC	8 cut(s)	361, 393, 472, 527, 650, 866, 877, 1124
AclWI	GGATC	3 cut(s)	103, 692, 1364
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	682
AcyI	GRCGYC	1 cut(s)	1028
AfaI	GTAC	2 cut(s)	384, 1077
AflIII	ACRYGT	2 cut(s)	726, 989
AgsI	TTSAA	4 cut(s)	76, 83, 822, 964
AjuI	GAANNNNNNNTTGG	4 cut(s)	389, 421, 596, 628
AluBI	AGCT	6 cut(s)	519, 761, 803, 1092, 1283, 1377
AluI	AGCT	6 cut(s)	519, 761, 803, 1092, 1283, 1377
Alw21I	GWGCWC	1 cut(s)	1094
Alw26I	GTCTC	2 cut(s)	612, 935
AlwI	GGATC	3 cut(s)	103, 692, 1364
Ama87I	CYCGRG	1 cut(s)	1079
AoxI	GGCC	7 cut(s)	345, 815, 835, 982, 1176, 1225, 1244
ApeKI	GCWGC	2 cut(s)	863, 1280
ApoI	RAATTY	1 cut(s)	682
ArsI	GACNNNNNNTTYG	3 cut(s)	31, 312, 344
AspS9I	GGNCC	5 cut(s)	15, 469, 983, 1226, 1244
AsuC2I	CCSGG	4 cut(s)	344, 981, 1080, 1081
AsuHPI	GGTGA	3 cut(s)	280, 592, 839
AvaI	CYCGRG	1 cut(s)	1079
AvaII	GGWCC	2 cut(s)	15, 469
BanI	GGYRCC	1 cut(s)	911
BanII	GRGCYC	2 cut(s)	1094, 1276
Bbv12I	GWGCWC	1 cut(s)	1094
BbvI	GCAGC	2 cut(s)	875, 1292
BccI	CCATC	2 cut(s)	185, 538
BceAI	ACGGC	4 cut(s)	1070, 1077, 1231, 1339
BciVI	GTATCC	1 cut(s)	635
BcnI	CCSGG	4 cut(s)	344, 981, 1080, 1081
BcoDI	GTCTC	2 cut(s)	612, 935
BfaI	CTAG	3 cut(s)	419, 503, 1065
BfmI	CTRYAG	2 cut(s)	45, 99
BfuI	GTATCC	1 cut(s)	635
BglII	AGATCT	1 cut(s)	784
BisI	GCNGC	3 cut(s)	864, 1124, 1281
BlsI	GCNGC	3 cut(s)	865, 1125, 1282
BmcAI	AGTACT	1 cut(s)	384
Bme1390I	CCNGG	4 cut(s)	344, 981, 1080, 1081
Bme18I	GGWCC	2 cut(s)	15, 469
BmeT110I	CYCGRG	1 cut(s)	1079
BmgT120I	GGNCC	5 cut(s)	15, 469, 983, 1226, 1244
BmiI	GGNNCC	4 cut(s)	40, 416, 913, 1354
BmrFI	CCNGG	4 cut(s)	344, 981, 1080, 1081
BmrI	ACTGGG	1 cut(s)	1170
BmsI	GCATC	6 cut(s)	372, 448, 724, 736, 820, 912
BmuI	ACTGGG	1 cut(s)	1170
BoxI	GACNNNNGTC	1 cut(s)	1031
BpmI	CTGGAG	1 cut(s)	54
BpuEI	CTTGAG	5 cut(s)	499, 505, 613, 959, 1078
BpuMI	CCSGG	4 cut(s)	344, 981, 1080, 1081
BsaHI	GRCGYC	1 cut(s)	1028
BsaJI	CCNNGG	4 cut(s)	11, 91, 342, 1079
BsaWI	WCCGGW	3 cut(s)	686, 902, 930
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bse1I	ACTGG	3 cut(s)	37, 1031, 1165
BseDI	CCNNGG	4 cut(s)	11, 91, 342, 1079
BseGI	GGATG	3 cut(s)	530, 739, 899
BseNI	ACTGG	3 cut(s)	37, 1031, 1165
BseXI	GCAGC	2 cut(s)	875, 1292
BseYI	CCCAGC	1 cut(s)	1210
BsgI	GTGCAG	1 cut(s)	882
Bsh1285I	CGRYCG	1 cut(s)	1121
BshFI	GGCC	7 cut(s)	347, 817, 837, 984, 1178, 1227, 1246
BshNI	GGYRCC	1 cut(s)	911
BsiEI	CGRYCG	1 cut(s)	1121
BsiHKAI	GWGCWC	1 cut(s)	1094
BsiHKCI	CYCGRG	1 cut(s)	1079
BsiSI	CCGG	7 cut(s)	240, 344, 687, 903, 931, 981, 1080
BslFI	GGGAC	2 cut(s)	130, 407
BsmAI	GTCTC	2 cut(s)	612, 935
BsmFI	GGGAC	2 cut(s)	130, 407
BsmI	GAATGC	2 cut(s)	243, 507
BsnI	GGCC	7 cut(s)	347, 817, 837, 984, 1178, 1227, 1246
BsoBI	CYCGRG	1 cut(s)	1079
Bsp1286I	GDGCHC	2 cut(s)	1094, 1276
Bsp143I	GATC	4 cut(s)	95, 697, 784, 1369
BspACI	CCGC	8 cut(s)	361, 393, 472, 527, 650, 866, 877, 1124
BspANI	GGCC	7 cut(s)	347, 817, 837, 984, 1178, 1227, 1246
BspLI	GGNNCC	4 cut(s)	40, 416, 913, 1354
BspPI	GGATC	3 cut(s)	103, 692, 1364
BspT107I	GGYRCC	1 cut(s)	911
BsrI	ACTGG	3 cut(s)	37, 1031, 1165
BssECI	CCNNGG	4 cut(s)	11, 91, 342, 1079
BssMI	GATC	4 cut(s)	95, 697, 784, 1369
BssNI	GRCGYC	1 cut(s)	1028
BssT1I	CCWWGG	1 cut(s)	91
Bst4CI	ACNGT	4 cut(s)	144, 188, 860, 1267
BstACI	GRCGYC	1 cut(s)	1028
BstAPI	GCANNNNNTGC	1 cut(s)	1286
BstC8I	GCNNGC	3 cut(s)	527, 815, 835
BstDEI	CTNAG	1 cut(s)	296
BstF5I	GGATG	3 cut(s)	530, 739, 899
BstKTI	GATC	4 cut(s)	98, 700, 787, 1372
BstMAI	GTCTC	2 cut(s)	612, 935
BstMBI	GATC	4 cut(s)	95, 697, 784, 1369
BstMCI	CGRYCG	1 cut(s)	1121
BstMWI	GCNNNNNNNGC	3 cut(s)	1280, 1286, 1332
BstNSI	RCATGY	2 cut(s)	730, 993
BstPAI	GACNNNNGTC	1 cut(s)	1031
BstSCI	CCNGG	4 cut(s)	342, 979, 1078, 1079
BstSFI	CTRYAG	2 cut(s)	45, 99
BstV1I	GCAGC	2 cut(s)	875, 1292
BstX2I	RGATCY	2 cut(s)	95, 784
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	2 cut(s)	95, 784
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	7 cut(s)	347, 817, 837, 984, 1178, 1227, 1246
BtsCI	GGATG	3 cut(s)	530, 739, 899
BtsIMutI	CAGTG	1 cut(s)	865
Cac8I	GCNNGC	3 cut(s)	527, 815, 835
Cfr13I	GGNCC	5 cut(s)	15, 469, 983, 1226, 1244
Cfr9I	CCCGGG	1 cut(s)	1079
CpoI	CGGWCCG	1 cut(s)	15
CseI	GACGC	1 cut(s)	1036
Csp6I	GTAC	2 cut(s)	383, 1076
CspI	CGGWCCG	1 cut(s)	15
CviQI	GTAC	2 cut(s)	383, 1076
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	4 cut(s)	97, 699, 786, 1371
DpnII	GATC	4 cut(s)	95, 697, 784, 1369
DraI	TTTAAA	1 cut(s)	765
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	665
Ecl136II	GAGCTC	1 cut(s)	1092
Eco130I	CCWWGG	1 cut(s)	91
Eco147I	AGGCCT	1 cut(s)	1178
Eco24I	GRGCYC	2 cut(s)	1094, 1276
Eco47I	GGWCC	2 cut(s)	15, 469
Eco53kI	GAGCTC	1 cut(s)	1092
Eco88I	CYCGRG	1 cut(s)	1079
EcoICRI	GAGCTC	1 cut(s)	1092
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	1094, 1276
ErhI	CCWWGG	1 cut(s)	91
FaqI	GGGAC	2 cut(s)	130, 407
FauI	CCCGC	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	1035
Fnu4HI	GCNGC	3 cut(s)	864, 1124, 1281
FokI	GGATG	3 cut(s)	517, 746, 886
FriOI	GRGCYC	2 cut(s)	1094, 1276
Fsp4HI	GCNGC	3 cut(s)	864, 1124, 1281
FspBI	CTAG	3 cut(s)	419, 503, 1065
GluI	GCNGC	3 cut(s)	864, 1124, 1281
GsaI	CCCAGC	1 cut(s)	1214
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	7 cut(s)	347, 817, 837, 984, 1178, 1227, 1246
HapII	CCGG	7 cut(s)	240, 344, 687, 903, 931, 981, 1080
HgaI	GACGC	1 cut(s)	1036
Hin1I	GRCGYC	1 cut(s)	1028
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HinfI	GANTC	3 cut(s)	87, 597, 1047
HpaII	CCGG	7 cut(s)	240, 344, 687, 903, 931, 981, 1080
HphI	GGTGA	3 cut(s)	280, 592, 839
Hpy166II	GTNNAC	5 cut(s)	109, 622, 775, 850, 1036
Hpy188I	TCNGA	6 cut(s)	19, 641, 677, 784, 1016, 1046
Hpy188III	TCNNGA	2 cut(s)	592, 788
Hpy8I	GTNNAC	5 cut(s)	109, 622, 775, 850, 1036
Hpy99I	CGWCG	1 cut(s)	1370
HpyAV	CCTTC	4 cut(s)	173, 449, 828, 1311
HpyCH4III	ACNGT	4 cut(s)	144, 188, 860, 1267
HpyCH4IV	ACGT	2 cut(s)	354, 1365
HpyCH4V	TGCA	9 cut(s)	26, 155, 737, 833, 863, 1183, 1280, 1335, 1389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1280, 1286, 1332
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	2 cut(s)	354, 1365
Hsp92I	GRCGYC	1 cut(s)	1028
Kzo9I	GATC	4 cut(s)	95, 697, 784, 1369
LmnI	GCTCC	2 cut(s)	1089, 1352
Lsp1109I	GCAGC	2 cut(s)	875, 1292
LweI	GCATC	6 cut(s)	372, 448, 724, 736, 820, 912
MaeI	CTAG	3 cut(s)	419, 503, 1065
MaeII	ACGT	2 cut(s)	354, 1365
MaeIII	GTNAC	1 cut(s)	890
MalI	GATC	4 cut(s)	97, 699, 786, 1371
MboI	GATC	4 cut(s)	95, 697, 784, 1369
MboII	GAAGA	2 cut(s)	64, 1198
MflI	RGATCY	2 cut(s)	95, 784
MhlI	GDGCHC	2 cut(s)	1094, 1276
MluCI	AATT	5 cut(s)	310, 682, 740, 792, 1336
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	4 cut(s)	700, 711, 1024, 1039
MnlI	CCTC	9 cut(s)	21, 29, 76, 143, 147, 222, 472, 1127, 1168
MseI	TTAA	4 cut(s)	368, 573, 764, 1233
MslI	CAYNNNNRTG	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	7 cut(s)	240, 344, 687, 903, 931, 981, 1080
MspR9I	CCNGG	4 cut(s)	344, 981, 1080, 1081
Mva1269I	GAATGC	2 cut(s)	243, 507
MwoI	GCNNNNNNNGC	3 cut(s)	1280, 1286, 1332
NciI	CCSGG	4 cut(s)	344, 981, 1080, 1081
NdeII	GATC	4 cut(s)	95, 697, 784, 1369
NlaIV	GGNNCC	4 cut(s)	40, 416, 913, 1354
NmeAIII	GCCGAG	1 cut(s)	626
NmuCI	GTSAC	1 cut(s)	890
NspI	RCATGY	2 cut(s)	730, 993
PceI	AGGCCT	1 cut(s)	1178
PciI	ACATGT	2 cut(s)	726, 989
PcsI	WCGNNNNNNNCGW	1 cut(s)	1067
PctI	GAATGC	2 cut(s)	243, 507
PfeI	GAWTC	2 cut(s)	597, 1047
PflMI	CCANNNNNTGG	1 cut(s)	1379
PkrI	GCNGC	3 cut(s)	865, 1125, 1282
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PscI	ACATGT	2 cut(s)	726, 989
PshAI	GACNNNNGTC	1 cut(s)	1031
Psp124BI	GAGCTC	1 cut(s)	1094
PspFI	CCCAGC	1 cut(s)	1210
PspN4I	GGNNCC	4 cut(s)	40, 416, 913, 1354
PspPI	GGNCC	5 cut(s)	15, 469, 983, 1226, 1244
PsuI	RGATCY	2 cut(s)	95, 784
RsaI	GTAC	2 cut(s)	384, 1077
RsaNI	GTAC	2 cut(s)	383, 1076
RseI	CAYNNNNRTG	1 cut(s)	725
Rsr2I	CGGWCCG	1 cut(s)	15
RsrII	CGGWCCG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	1094
SaqAI	TTAA	4 cut(s)	368, 573, 764, 1233
SatI	GCNGC	3 cut(s)	864, 1124, 1281
Sau3AI	GATC	4 cut(s)	95, 697, 784, 1369
Sau96I	GGNCC	5 cut(s)	15, 469, 983, 1226, 1244
ScaI	AGTACT	1 cut(s)	384
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	4 cut(s)	344, 981, 1080, 1081
SduI	GDGCHC	2 cut(s)	1094, 1276
SfaNI	GCATC	6 cut(s)	372, 448, 724, 736, 820, 912
SfcI	CTRYAG	2 cut(s)	45, 99
SinI	GGWCC	2 cut(s)	15, 469
SmaI	CCCGGG	1 cut(s)	1081
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	5 cut(s)	514, 520, 592, 974, 1093
SmoI	CTYRAG	5 cut(s)	514, 520, 592, 974, 1093
Sse9I	AATT	5 cut(s)	310, 682, 740, 792, 1336
SseBI	AGGCCT	1 cut(s)	1178
SsiI	CCGC	8 cut(s)	361, 393, 472, 527, 650, 866, 877, 1124
SspI	AATATT	2 cut(s)	1145, 1192
SspMI	CTAG	3 cut(s)	419, 503, 1065
SstI	GAGCTC	1 cut(s)	1094
StuI	AGGCCT	1 cut(s)	1178
StyD4I	CCNGG	4 cut(s)	342, 979, 1078, 1079
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	4 cut(s)	144, 188, 860, 1267
TaiI	ACGT	2 cut(s)	357, 1368
TaqI	TCGA	2 cut(s)	789, 1368
TaqII	GACCGA	1 cut(s)	1107
TasI	AATT	5 cut(s)	310, 682, 740, 792, 1336
TatI	WGTACW	1 cut(s)	382
TauI	GCSGC	1 cut(s)	1126
TfiI	GAWTC	2 cut(s)	597, 1047
Tru1I	TTAA	4 cut(s)	368, 573, 764, 1233
Tru9I	TTAA	4 cut(s)	368, 573, 764, 1233
TscAI	CASTG	1 cut(s)	865
TseFI	GTSAC	1 cut(s)	890
TseI	GCWGC	2 cut(s)	863, 1280
Tsp45I	GTSAC	1 cut(s)	890
TspDTI	ATGAA	5 cut(s)	393, 397, 604, 981, 1307
TspGWI	ACGGA	1 cut(s)	1063
TspMI	CCCGGG	1 cut(s)	1079
TspRI	CASTG	1 cut(s)	865
Van91I	CCANNNNNTGG	1 cut(s)	1379
VpaK11BI	GGWCC	2 cut(s)	15, 469
XapI	RAATTY	1 cut(s)	682
XceI	RCATGY	2 cut(s)	730, 993
XmaI	CCCGGG	1 cut(s)	1079
XmiI	GTMKAC	1 cut(s)	1035
XspI	CTAG	3 cut(s)	419, 503, 1065
ZrmI	AGTACT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.