Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8442059.1

Orthogroup ID

OG0009930

Physical Location & Seq

Genomic Coordinates Forward (+)

157 .. 1452

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8442059.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atggcaaatcctcggcccgatttcgcattaactggaggaaccactatagttttgctgtttcttgcctcaatcttcaatgttcaaggagtccaaggatctataggagtgaactatggcacaatggcgaacgacctccctccaccgtcccaagttgcacacttccttctacaatccaccatcatcaaccgtgttaggctctttgacaccaaccctcaaatgctccaagcctttgctcattccggcattccactaacaatcactatccccaatgaccaaatcccccacttcaccaaactaaggtttgcccaaaattggctcaaaaccaatgtcataccttacaccccggccaccaacatagtccgcatcttaataggaaatgaagtactctcaaccgccaacaagttgttcattgggaacctagtccctgctatgctaacccttcacatggcacttgtagatgcctctttggaccgccaaatcaaagtctctactccacactctctaggcattctctcaagctcaagcccaccatccacaggtaagtttaggcaaggctatgacacccatgtccttaaaccactactcactttcttgagaatcaccaagtcccctttcatggtaaacccctatccatatttcggatactcggcggacacgctcaactacgcacttttccgaccaaattccggggtggttgatcccaatactaaactcctatacaccaacatgttggacgcacaattagatgctatatattcagctttaaagattgtgggcttttcagacctcgaaattgttatagctgaaacgggctggccttctaagggtgatgcaggccaagttggtgttgacccagacagtgcggcggactacaaccaaaatctcattcgtcatgtgacatccggtaatggcaccccattgatgccaaagcggacttttgagacttacatctttgccctgttcaatgaaaatctcaagcccggcccaacatgcgagagatattttgggcttttccgacccgacatgacgccggcctacaatgtcggaatcctacggcacacggtagctgccgcaaccgataaccaaactaaaaatgttccctttttcatgtcatcattttgtatctgcttgattggtttgtggacttggatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

384

Amino Acids

42.32

Weight (kDa)

8.65

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24318 AT5G24318 AT5G24318 AT5G24318
fragaria_vesca	FvH4_7g32100
malus_domestica	MD01G1223700.v1.1 MD07G1294400.v1.1
prunus_persica	Prupe.2G314200_v2.0.a1
pyrus_communis	pycom07g26720
rosa_chinensis	RchiOBHm_Chr1g0381691
rosa_laevigata	RLG00000026214
rosa_multiflora	Rmu_co8442059.1_g000001 Rmu_sc0004579.1_g000005 Rmu_ssc0000316.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278510
rosa_rugosa	Rorug01G0430400
rosa_samantha	Rh1AG453800 Rh1BG411000 Rh1CG425400 Rh1DG442800
rosa_wichuraiana	Rw1G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	911
AciI	CCGC	8 cut(s)	361, 393, 472, 650, 863, 866, 931, 1071
AclWI	GGATC	2 cut(s)	103, 692
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	682
AcyI	GRCGYC	1 cut(s)	1028
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	8 cut(s)	297, 312, 445, 536, 616, 638, 686, 824
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	3 cut(s)	76, 83, 964
AjuI	GAANNNNNNNTTGG	6 cut(s)	389, 421, 596, 628, 870, 902
AluBI	AGCT	4 cut(s)	519, 761, 803, 1067
AluI	AGCT	4 cut(s)	519, 761, 803, 1067
Alw26I	GTCTC	2 cut(s)	490, 935
AlwI	GGATC	2 cut(s)	103, 692
AoxI	GGCC	6 cut(s)	14, 345, 815, 835, 982, 1032
ApeKI	GCWGC	1 cut(s)	1067
ApoI	RAATTY	1 cut(s)	682
ArsI	GACNNNNNNTTYG	2 cut(s)	312, 344
AspS9I	GGNCC	3 cut(s)	15, 469, 983
AsuC2I	CCSGG	3 cut(s)	344, 688, 981
AsuHPI	GGTGA	3 cut(s)	280, 592, 839
AvaII	GGWCC	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	911
BbvI	GCAGC	1 cut(s)	1054
BccI	CCATC	2 cut(s)	185, 538
BceAI	ACGGC	1 cut(s)	1070
BciVI	GTATCC	1 cut(s)	635
BcnI	CCSGG	3 cut(s)	344, 688, 981
BcoDI	GTCTC	2 cut(s)	490, 935
BfaI	CTAG	2 cut(s)	419, 503
BfmI	CTRYAG	2 cut(s)	45, 99
BfuI	GTATCC	1 cut(s)	635
BisI	GCNGC	3 cut(s)	864, 1068, 1071
BlsI	GCNGC	3 cut(s)	865, 1069, 1072
BmcAI	AGTACT	1 cut(s)	384
Bme1390I	CCNGG	3 cut(s)	344, 688, 981
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	3 cut(s)	15, 469, 983
BmiI	GGNNCC	3 cut(s)	40, 416, 913
BmrFI	CCNGG	3 cut(s)	344, 688, 981
BmsI	GCATC	5 cut(s)	372, 448, 736, 820, 912
BpmI	CTGGAG	1 cut(s)	54
BpuEI	CTTGAG	4 cut(s)	499, 505, 613, 959
BpuMI	CCSGG	3 cut(s)	344, 688, 981
BsaHI	GRCGYC	1 cut(s)	1028
BsaJI	CCNNGG	4 cut(s)	11, 91, 342, 687
BsaWI	WCCGGW	1 cut(s)	902
Bsc4I	CCNNNNNNNGG	8 cut(s)	297, 312, 445, 536, 616, 638, 686, 824
Bse118I	RCCGGY	1 cut(s)	1030
Bse1I	ACTGG	1 cut(s)	37
BseDI	CCNNGG	4 cut(s)	11, 91, 342, 687
BseGI	GGATG	2 cut(s)	530, 899
BseLI	CCNNNNNNNGG	8 cut(s)	297, 312, 445, 536, 616, 638, 686, 824
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	1054
BshFI	GGCC	6 cut(s)	16, 347, 817, 837, 984, 1034
BshNI	GGYRCC	1 cut(s)	911
BsiSI	CCGG	6 cut(s)	240, 344, 687, 903, 981, 1031
BslFI	GGGAC	3 cut(s)	130, 407, 592
BslI	CCNNNNNNNGG	8 cut(s)	297, 312, 445, 536, 616, 638, 686, 824
BsmAI	GTCTC	2 cut(s)	490, 935
BsmFI	GGGAC	3 cut(s)	130, 407, 592
BsmI	GAATGC	2 cut(s)	243, 507
BsnI	GGCC	6 cut(s)	16, 347, 817, 837, 984, 1034
Bsp143I	GATC	3 cut(s)	95, 697, 1149
BspACI	CCGC	8 cut(s)	361, 393, 472, 650, 863, 866, 931, 1071
BspANI	GGCC	6 cut(s)	16, 347, 817, 837, 984, 1034
BspLI	GGNNCC	3 cut(s)	40, 416, 913
BspPI	GGATC	2 cut(s)	103, 692
BspT107I	GGYRCC	1 cut(s)	911
BsrFI	RCCGGY	1 cut(s)	1030
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	1030
BssECI	CCNNGG	4 cut(s)	11, 91, 342, 687
BssMI	GATC	3 cut(s)	95, 697, 1149
BssNI	GRCGYC	1 cut(s)	1028
BssT1I	CCWWGG	1 cut(s)	91
Bst4CI	ACNGT	4 cut(s)	144, 188, 860, 1063
BstACI	GRCGYC	1 cut(s)	1028
BstC8I	GCNNGC	3 cut(s)	815, 835, 1032
BstDEI	CTNAG	2 cut(s)	296, 822
BstF5I	GGATG	2 cut(s)	530, 899
BstKTI	GATC	3 cut(s)	98, 700, 1152
BstMAI	GTCTC	2 cut(s)	490, 935
BstMBI	GATC	3 cut(s)	95, 697, 1149
BstMWI	GCNNNNNNNGC	1 cut(s)	990
BstNSI	RCATGY	2 cut(s)	730, 993
BstSCI	CCNGG	3 cut(s)	342, 686, 979
BstSFI	CTRYAG	2 cut(s)	45, 99
BstV1I	GCAGC	1 cut(s)	1054
BstX2I	RGATCY	2 cut(s)	95, 1149
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	2 cut(s)	95, 1149
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	6 cut(s)	16, 347, 817, 837, 984, 1034
BtsCI	GGATG	2 cut(s)	530, 899
BtsIMutI	CAGTG	1 cut(s)	865
Cac8I	GCNNGC	3 cut(s)	815, 835, 1032
Cfr10I	RCCGGY	1 cut(s)	1030
Cfr13I	GGNCC	3 cut(s)	15, 469, 983
CseI	GACGC	2 cut(s)	743, 1036
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	8 cut(s)	445, 566, 616, 727, 893, 990, 1024, 1108
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	2 cut(s)	296, 822
DpnI	GATC	3 cut(s)	97, 699, 1151
DpnII	GATC	3 cut(s)	95, 697, 1149
DraI	TTTAAA	1 cut(s)	765
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	345
EciI	GGCGGA	2 cut(s)	665, 881
Eco130I	CCWWGG	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	8 cut(s)	448, 569, 619, 730, 896, 993, 1027, 1111
FaqI	GGGAC	3 cut(s)	130, 407, 592
FatI	CATG	8 cut(s)	444, 565, 615, 726, 892, 989, 1023, 1107
Fnu4HI	GCNGC	3 cut(s)	864, 1068, 1071
FokI	GGATG	2 cut(s)	517, 886
Fsp4HI	GCNGC	3 cut(s)	864, 1068, 1071
FspBI	CTAG	2 cut(s)	419, 503
GluI	GCNGC	3 cut(s)	864, 1068, 1071
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	6 cut(s)	16, 347, 817, 837, 984, 1034
HapII	CCGG	6 cut(s)	240, 344, 687, 903, 981, 1031
HgaI	GACGC	2 cut(s)	743, 1036
Hin1I	GRCGYC	1 cut(s)	1028
Hin1II	CATG	8 cut(s)	448, 569, 619, 730, 896, 993, 1027, 1111
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HinfI	GANTC	3 cut(s)	87, 597, 1047
HpaII	CCGG	6 cut(s)	240, 344, 687, 903, 981, 1031
HphI	GGTGA	3 cut(s)	280, 592, 839
Hpy166II	GTNNAC	4 cut(s)	109, 622, 850, 1143
Hpy188I	TCNGA	6 cut(s)	641, 677, 784, 1016, 1046, 1154
Hpy188III	TCNNGA	1 cut(s)	592
Hpy8I	GTNNAC	4 cut(s)	109, 622, 850, 1143
HpyAV	CCTTC	3 cut(s)	173, 449, 828
HpyCH4III	ACNGT	4 cut(s)	144, 188, 860, 1063
HpyCH4V	TGCA	2 cut(s)	155, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	990
HpyF3I	CTNAG	2 cut(s)	296, 822
Hsp92I	GRCGYC	1 cut(s)	1028
Hsp92II	CATG	8 cut(s)	448, 569, 619, 730, 896, 993, 1027, 1111
KroI	GCCGGC	1 cut(s)	1030
KroNI	GCCGGC	1 cut(s)	1032
Kzo9I	GATC	3 cut(s)	95, 697, 1149
LmnI	GCTCC	1 cut(s)	225
Lsp1109I	GCAGC	1 cut(s)	1054
LweI	GCATC	5 cut(s)	372, 448, 736, 820, 912
MaeI	CTAG	2 cut(s)	419, 503
MaeIII	GTNAC	1 cut(s)	895
MalI	GATC	3 cut(s)	97, 699, 1151
MboI	GATC	3 cut(s)	95, 697, 1149
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	2 cut(s)	95, 1149
MluCI	AATT	4 cut(s)	310, 682, 740, 792
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	4 cut(s)	700, 711, 1024, 1039
MnlI	CCTC	8 cut(s)	21, 29, 76, 143, 147, 222, 472, 797
MroNI	GCCGGC	1 cut(s)	1030
MseI	TTAA	4 cut(s)	29, 368, 573, 764
MslI	CAYNNNNRTG	1 cut(s)	725
MspI	CCGG	6 cut(s)	240, 344, 687, 903, 981, 1031
MspR9I	CCNGG	3 cut(s)	344, 688, 981
Mva1269I	GAATGC	2 cut(s)	243, 507
MwoI	GCNNNNNNNGC	1 cut(s)	990
NaeI	GCCGGC	1 cut(s)	1032
NciI	CCSGG	3 cut(s)	344, 688, 981
NdeII	GATC	3 cut(s)	95, 697, 1149
NgoMIV	GCCGGC	1 cut(s)	1030
NlaIII	CATG	8 cut(s)	448, 569, 619, 730, 896, 993, 1027, 1111
NlaIV	GGNNCC	3 cut(s)	40, 416, 913
NmeAIII	GCCGAG	1 cut(s)	626
NmuCI	GTSAC	1 cut(s)	895
NspI	RCATGY	2 cut(s)	730, 993
PciI	ACATGT	1 cut(s)	726
PctI	GAATGC	2 cut(s)	243, 507
PdiI	GCCGGC	1 cut(s)	1032
PfeI	GAWTC	2 cut(s)	597, 1047
PkrI	GCNGC	3 cut(s)	865, 1069, 1072
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PscI	ACATGT	1 cut(s)	726
PspN4I	GGNNCC	3 cut(s)	40, 416, 913
PspPI	GGNCC	3 cut(s)	15, 469, 983
PsuI	RGATCY	2 cut(s)	95, 1149
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	725
SaqAI	TTAA	4 cut(s)	29, 368, 573, 764
SatI	GCNGC	3 cut(s)	864, 1068, 1071
Sau3AI	GATC	3 cut(s)	95, 697, 1149
Sau96I	GGNCC	3 cut(s)	15, 469, 983
ScaI	AGTACT	1 cut(s)	384
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	3 cut(s)	344, 688, 981
SfaNI	GCATC	5 cut(s)	372, 448, 736, 820, 912
SfcI	CTRYAG	2 cut(s)	45, 99
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	4 cut(s)	514, 520, 592, 974
SmoI	CTYRAG	4 cut(s)	514, 520, 592, 974
Sse9I	AATT	4 cut(s)	310, 682, 740, 792
SsiI	CCGC	8 cut(s)	361, 393, 472, 650, 863, 866, 931, 1071
SspMI	CTAG	2 cut(s)	419, 503
StyD4I	CCNGG	3 cut(s)	342, 686, 979
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	4 cut(s)	144, 188, 860, 1063
TaqI	TCGA	1 cut(s)	789
TasI	AATT	4 cut(s)	310, 682, 740, 792
TatI	WGTACW	1 cut(s)	382
TauI	GCSGC	2 cut(s)	866, 1073
TfiI	GAWTC	2 cut(s)	597, 1047
Tru1I	TTAA	4 cut(s)	29, 368, 573, 764
Tru9I	TTAA	4 cut(s)	29, 368, 573, 764
TscAI	CASTG	1 cut(s)	865
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	1 cut(s)	1067
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	5 cut(s)	393, 397, 604, 981, 1096
TspRI	CASTG	1 cut(s)	865
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	682
XceI	RCATGY	2 cut(s)	730, 993
XspI	CTAG	2 cut(s)	419, 503
ZrmI	AGTACT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.