MD07G1294400.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
35536365 .. 35538548
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1294400.v1.1.491

Sequence Viewer

Length: 1398 bp
ATGGGAAATTTTGCTCTCAATTTTGCATCGTCTAGAAGATGCATTTTGCTCCTTCTCGTCTCAATCTTCGTTCAAGGAGGGGAAGGATCTATAGGAGTGAACTATGGCACGATGGCGAGTGACCTTCCTCCGCCGGCCAAAGTCGCCCACTTCCTTCTGGAATCCACCATTATCAACCGTGTTAGGCTCTTTGACACCAACCCCGACATACTCCGAGCCTTTGCTCACACCGGCATCGCCGTCACAATTACCATCCCAAATGACCAAATCCCCCACCTCACCAAGATACGCTCCGCCCAACAGTGGCTTAAAACCAACGTCCAGCCTCATATCCCAGCCACCAACATTGTCCGAATTTTAGTAGGCAACGAAGTATTATCCACCACGAACAAGTTGTTCATTACTGGCCTTGTCCCTGCCATGCAAGCCCTCCACAATGCCCTAGTAGATGCGTCCTGGGACCGCCAAATTAAGGTCTCTACCCCACACTCTCTAGGCATTCTCTCCAGCTCAACCCCACCTTCCTCCGGCAAATTTAGACAAGGCTACGACATCCATGTCCTTAAACCTTTGCTCACTTTCTTGCAATCCACCAATTCTCCTTTCATGGTGAACCCGTATCCGTATTTCGGATACTCCCCCGAAACGCTTGATTTCGCGCTTTTCCGGCCAAATCCCGGTGTGCTTGATGGGAATACTAAAATGCTATACACCAACATGTTGGATGCACAATTAGATGCTGTTTTTTCAGCTATGAAACTTGTGGGCTTTGAGGACCTTGAGATTGTTATTGCCGAAACAGGTTGGCCCTCTCAGGGTGATCCGGCCCAAGTTGGGGTTGACGCACAGAGTGCTGAGGATTACAATCGAAATCTCATTCAACACGTGACATCAGGTTATGGCACCCCGTTAATGCCAAACCGAACTTTTGAGACTTTCGTATTTTCCTTGTTCAATGAAAATCTCAAGCCCGGCCCAACACCAGAGAGGAATTTTGGGCTTTTTCGACCCGACATGACGCCGACCTACAACGTCGGAGTCCTTCGGCACACGGCTAGTTCGACTACACCTAAGAACTCAGGCCCAGGCCCAGTCCCAGTGTTGGCACCGGCGAGCCCGCCGCAATCACGCGGCGGTAAATTATGGTGCTTGCCCAAGAAAGGGGCCGACCCGGAGGCACTGCAGAAGAATATTGATTATGTTTGTGGGCTGGGATTGAATTGTGGGCCAATCAAACAAGGTGGGCTGTGCTTTATGCCCAACACAGTTAGAGCCCATGCCGCGTATGCCATGAATGTCTACTTTCAAGCAATGGGAAGGAAGGATTCTGATTGTGATTTTGAACAGACTGGCGCCACCACTGCCGTCGATCCAAGCTATGGAAAGTGCAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

466

Amino Acids

50.65

Weight (kDa)

8.09

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 31 - 345 6.8e-81 Glycosyl hydrolases family 17
X8 PF07983 381 - 451 4.2e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 557
AccB1I GGYRCC 3 cut(s) 902, 1105, 1352
AccB7I CCANNNNNTGG 1 cut(s) 1379
AccI GTMKAC 1 cut(s) 1299
AccII CGCG 3 cut(s) 659, 1131, 1283
AciI CCGC 8 cut(s) 131, 294, 463, 1118, 1121, 1131, 1134, 1281
AclWI GGATC 3 cut(s) 94, 815, 1364
AcoI YGGCCR 2 cut(s) 135, 668
AcsI RAATTY 4 cut(s) 7, 354, 533, 991
AcvI CACGTG 1 cut(s) 886
AcyI GRCGYC 2 cut(s) 1019, 1353
AdeI CACNNNGTG 1 cut(s) 851
AflIII ACRYGT 2 cut(s) 717, 883
AgsI TTSAA 6 cut(s) 74, 881, 955, 1219, 1307, 1343
AjnI CCWGG 2 cut(s) 455, 1084
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AluBI AGCT 3 cut(s) 510, 752, 1377
AluI AGCT 3 cut(s) 510, 752, 1377
Alw26I GTCTC 3 cut(s) 64, 481, 926
AlwI GGATC 3 cut(s) 94, 815, 1364
ApoI RAATTY 4 cut(s) 7, 354, 533, 991
AspLEI GCGC 2 cut(s) 661, 1355
AspS9I GGNCC 9 cut(s) 460, 775, 807, 826, 974, 1082, 1088, 1164, 1226
AsuC2I CCSGG 3 cut(s) 678, 972, 1172
AsuHPI GGTGA 3 cut(s) 271, 622, 830
AvaII GGWCC 2 cut(s) 460, 775
BanI GGYRCC 3 cut(s) 902, 1105, 1352
BanII GRGCYC 2 cut(s) 1118, 1276
BbrPI CACGTG 1 cut(s) 886
BbvCI CCTCAGC 1 cut(s) 855
BccI CCATC 3 cut(s) 106, 260, 683
BceAI ACGGC 3 cut(s) 224, 1068, 1349
BciT130I CCWGG 2 cut(s) 457, 1086
BciVI GTATCC 2 cut(s) 626, 630
BcnI CCSGG 3 cut(s) 678, 972, 1172
BcoDI GTCTC 3 cut(s) 64, 481, 926
BfaI CTAG 4 cut(s) 33, 443, 494, 1056
BfmI CTRYAG 2 cut(s) 90, 1181
BfoI RGCGCY 1 cut(s) 1356
BfuI GTATCC 2 cut(s) 626, 630
BisI GCNGC 3 cut(s) 1121, 1132, 1281
BlsI GCNGC 3 cut(s) 1122, 1133, 1282
Bme1390I CCNGG 5 cut(s) 457, 678, 972, 1086, 1172
Bme18I GGWCC 2 cut(s) 460, 775
BmgT120I GGNCC 9 cut(s) 460, 775, 807, 826, 974, 1082, 1088, 1164, 1226
BmiI GGNNCC 5 cut(s) 461, 904, 1107, 1165, 1354
BmrFI CCNGG 5 cut(s) 457, 678, 972, 1086, 1172
BmrI ACTGGG 2 cut(s) 1085, 1091
BmsI GCATC 6 cut(s) 29, 35, 243, 439, 715, 727
BmuI ACTGGG 2 cut(s) 1085, 1091
BpmI CTGGAG 1 cut(s) 490
Bpu10I CCTNAGC 1 cut(s) 855
BpuEI CTTGAG 2 cut(s) 800, 950
BpuMI CCSGG 3 cut(s) 678, 972, 1172
BsaAI YACGTR 1 cut(s) 886
BsaBI GATNNNNATC 1 cut(s) 864
BsaHI GRCGYC 2 cut(s) 1019, 1353
BsaI GGTCTC 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 456, 1084
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bse118I RCCGGY 3 cut(s) 133, 230, 1108
Bse1I ACTGG 4 cut(s) 409, 1091, 1097, 1354
Bse3DI GCAATG 1 cut(s) 1317
Bse8I GATNNNNATC 1 cut(s) 864
BseBI CCWGG 2 cut(s) 457, 1086
BseDI CCNNGG 2 cut(s) 456, 1084
BseGI GGATG 3 cut(s) 252, 552, 730
BseJI GATNNNNATC 1 cut(s) 864
BseMI GCAATG 1 cut(s) 1317
BseMII CTCAG 3 cut(s) 827, 846, 1092
BseNI ACTGG 4 cut(s) 409, 1091, 1097, 1354
BseYI CCCAGC 2 cut(s) 334, 1210
Bsh1236I CGCG 3 cut(s) 659, 1131, 1283
BshNI GGYRCC 3 cut(s) 902, 1105, 1352
BsiSI CCGG 9 cut(s) 134, 231, 528, 667, 678, 824, 972, 1109, 1172
BslFI GGGAC 3 cut(s) 398, 473, 1079
BsmAI GTCTC 3 cut(s) 64, 481, 926
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 3 cut(s) 398, 473, 1079
BsmI GAATGC 1 cut(s) 498
Bso31I GGTCTC 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 1118, 1276
Bsp143I GATC 3 cut(s) 86, 820, 1369
BspACI CCGC 8 cut(s) 131, 294, 463, 1118, 1121, 1131, 1134, 1281
BspCNI CTCAG 3 cut(s) 826, 847, 1091
BspFNI CGCG 3 cut(s) 659, 1131, 1283
BspLI GGNNCC 5 cut(s) 461, 904, 1107, 1165, 1354
BspMAI CTGCAG 1 cut(s) 1185
BspPI GGATC 3 cut(s) 94, 815, 1364
BspT107I GGYRCC 3 cut(s) 902, 1105, 1352
BspTNI GGTCTC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 1317
BsrFI RCCGGY 3 cut(s) 133, 230, 1108
BsrI ACTGG 4 cut(s) 409, 1091, 1097, 1354
BssAI RCCGGY 3 cut(s) 133, 230, 1108
BssECI CCNNGG 2 cut(s) 456, 1084
BssMI GATC 3 cut(s) 86, 820, 1369
BssNI GRCGYC 2 cut(s) 1019, 1353
Bst2UI CCWGG 2 cut(s) 457, 1086
Bst4CI ACNGT 3 cut(s) 179, 303, 1267
BstACI GRCGYC 2 cut(s) 1019, 1353
BstAPI GCANNNNNTGC 1 cut(s) 851
BstBAI YACGTR 1 cut(s) 886
BstC8I GCNNGC 5 cut(s) 135, 426, 1114, 1118, 1151
BstDEI CTNAG 4 cut(s) 813, 855, 1071, 1078
BstF5I GGATG 3 cut(s) 252, 552, 730
BstFNI CGCG 3 cut(s) 659, 1131, 1283
BstH2I RGCGCY 1 cut(s) 1356
BstHHI GCGC 2 cut(s) 661, 1355
BstKTI GATC 3 cut(s) 89, 823, 1372
BstMAI GTCTC 3 cut(s) 64, 481, 926
BstMBI GATC 3 cut(s) 86, 820, 1369
BstMWI GCNNNNNNNGC 7 cut(s) 143, 425, 667, 851, 1280, 1286, 1361
BstNI CCWGG 2 cut(s) 457, 1086
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 5 cut(s) 455, 676, 970, 1084, 1170
BstSFI CTRYAG 2 cut(s) 90, 1181
BstUI CGCG 3 cut(s) 659, 1131, 1283
BstX2I RGATCY 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 721
BstYI RGATCY 1 cut(s) 86
BsuI GTATCC 2 cut(s) 626, 630
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 3 cut(s) 252, 552, 730
BtsI GCAGTG 2 cut(s) 1178, 1359
BtsIMutI CAGTG 4 cut(s) 308, 1104, 1178, 1359
Cac8I GCNNGC 5 cut(s) 135, 426, 1114, 1118, 1151
CfoI GCGC 2 cut(s) 661, 1355
Cfr10I RCCGGY 3 cut(s) 133, 230, 1108
Cfr13I GGNCC 9 cut(s) 460, 775, 807, 826, 974, 1082, 1088, 1164, 1226
CseI GACGC 3 cut(s) 441, 851, 1027
CspCI CAANNNNNGTGG 4 cut(s) 328, 363, 1222, 1257
CviAII CATG 7 cut(s) 421, 557, 607, 718, 1015, 1277, 1291
DdeI CTNAG 4 cut(s) 813, 855, 1071, 1078
DinI GGCGCC 1 cut(s) 1354
DpnI GATC 3 cut(s) 88, 822, 1371
DpnII GATC 3 cut(s) 86, 820, 1369
DraIII CACNNNGTG 1 cut(s) 851
DrdI GACNNNNNNGTC 1 cut(s) 557
DseDI GACNNNNNNGTC 1 cut(s) 557
EaeI YGGCCR 2 cut(s) 135, 668
EciI GGCGGA 2 cut(s) 120, 283
Eco24I GRGCYC 2 cut(s) 1118, 1276
Eco31I GGTCTC 1 cut(s) 481
Eco47I GGWCC 2 cut(s) 460, 775
Eco72I CACGTG 1 cut(s) 886
EcoO109I RGGNCCY 1 cut(s) 775
EcoRII CCWGG 2 cut(s) 455, 1084
EcoT22I ATGCAT 1 cut(s) 44
EcoT38I GRGCYC 2 cut(s) 1118, 1276
EgeI GGCGCC 1 cut(s) 1354
EheI GGCGCC 1 cut(s) 1354
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 7 cut(s) 424, 560, 610, 721, 1018, 1280, 1294
FaqI GGGAC 3 cut(s) 398, 473, 1079
FatI CATG 7 cut(s) 420, 556, 606, 717, 1014, 1276, 1290
FauI CCCGC 1 cut(s) 1125
FblI GTMKAC 1 cut(s) 1299
Fnu4HI GCNGC 3 cut(s) 1121, 1132, 1281
FokI GGATG 3 cut(s) 239, 539, 737
FriOI GRGCYC 2 cut(s) 1118, 1276
Fsp4HI GCNGC 3 cut(s) 1121, 1132, 1281
FspBI CTAG 4 cut(s) 33, 443, 494, 1056
GlaI GCGC 2 cut(s) 660, 1354
GluI GCNGC 3 cut(s) 1121, 1132, 1281
GsaI CCCAGC 2 cut(s) 338, 1214
GsuI CTGGAG 1 cut(s) 490
HaeII RGCGCY 1 cut(s) 1356
HapII CCGG 9 cut(s) 134, 231, 528, 667, 678, 824, 972, 1109, 1172
HgaI GACGC 3 cut(s) 441, 851, 1027
HhaI GCGC 2 cut(s) 661, 1355
Hin1I GRCGYC 2 cut(s) 1019, 1353
Hin1II CATG 7 cut(s) 424, 560, 610, 721, 1018, 1280, 1294
Hin6I GCGC 2 cut(s) 659, 1353
HinP1I GCGC 2 cut(s) 659, 1353
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HinfI GANTC 3 cut(s) 161, 1038, 1325
HpaII CCGG 9 cut(s) 134, 231, 528, 667, 678, 824, 972, 1109, 1172
HphI GGTGA 3 cut(s) 271, 622, 830
Hpy166II GTNNAC 4 cut(s) 100, 613, 841, 1300
Hpy188I TCNGA 5 cut(s) 215, 353, 632, 1037, 1330
Hpy188III TCNNGA 2 cut(s) 33, 158
Hpy8I GTNNAC 4 cut(s) 100, 613, 841, 1300
Hpy99I CGWCG 2 cut(s) 1037, 1370
HpyAV CCTTC 8 cut(s) 62, 77, 134, 164, 531, 1052, 1311, 1315
HpyCH4III ACNGT 3 cut(s) 179, 303, 1267
HpyCH4IV ACGT 3 cut(s) 318, 885, 1032
HpyCH4V TGCA 7 cut(s) 26, 42, 424, 586, 728, 1183, 1389
HpyF10VI GCNNNNNNNGC 7 cut(s) 143, 425, 667, 851, 1280, 1286, 1361
HpyF3I CTNAG 4 cut(s) 813, 855, 1071, 1078
HpySE526I ACGT 3 cut(s) 318, 885, 1032
Hsp92I GRCGYC 2 cut(s) 1019, 1353
Hsp92II CATG 7 cut(s) 424, 560, 610, 721, 1018, 1280, 1294
HspAI GCGC 2 cut(s) 659, 1353
KasI GGCGCC 1 cut(s) 1352
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 86, 820, 1369
LmnI GCTCC 2 cut(s) 54, 296
LweI GCATC 6 cut(s) 29, 35, 243, 439, 715, 727
MaeI CTAG 4 cut(s) 33, 443, 494, 1056
MaeII ACGT 3 cut(s) 318, 885, 1032
MaeIII GTNAC 3 cut(s) 119, 241, 886
MalI GATC 3 cut(s) 88, 822, 1371
MboI GATC 3 cut(s) 86, 820, 1369
MboII GAAGA 3 cut(s) 48, 58, 1198
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 2 cut(s) 1118, 1276
Mly113I GGCGCC 1 cut(s) 1353
MlyI GAGTC 1 cut(s) 1047
MmeI TCCRAC 2 cut(s) 702, 1015
Mph1103I ATGCAT 1 cut(s) 44
MroNI GCCGGC 1 cut(s) 133
MseI TTAA 4 cut(s) 309, 471, 564, 911
MslI CAYNNNNRTG 1 cut(s) 716
MspI CCGG 9 cut(s) 134, 231, 528, 667, 678, 824, 972, 1109, 1172
MspR9I CCNGG 5 cut(s) 457, 678, 972, 1086, 1172
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 2 cut(s) 457, 1086
MvnI CGCG 3 cut(s) 659, 1131, 1283
MwoI GCNNNNNNNGC 7 cut(s) 143, 425, 667, 851, 1280, 1286, 1361
NaeI GCCGGC 1 cut(s) 135
NarI GGCGCC 1 cut(s) 1353
NciI CCSGG 3 cut(s) 678, 972, 1172
NdeII GATC 3 cut(s) 86, 820, 1369
NgoMIV GCCGGC 1 cut(s) 133
NlaIII CATG 7 cut(s) 424, 560, 610, 721, 1018, 1280, 1294
NlaIV GGNNCC 5 cut(s) 461, 904, 1107, 1165, 1354
NmuCI GTSAC 3 cut(s) 119, 241, 886
NsiI ATGCAT 1 cut(s) 44
NspI RCATGY 1 cut(s) 721
PciI ACATGT 1 cut(s) 717
PcsI WCGNNNNNNNCGW 1 cut(s) 1058
PctI GAATGC 1 cut(s) 498
PdiI GCCGGC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 161, 1325
PflMI CCANNNNNTGG 1 cut(s) 1379
PkrI GCNGC 3 cut(s) 1122, 1133, 1282
PleI GAGTC 1 cut(s) 1046
PluTI GGCGCC 1 cut(s) 1356
PmaCI CACGTG 1 cut(s) 886
PmlI CACGTG 1 cut(s) 886
PpsI GAGTC 1 cut(s) 1046
Ppu21I YACGTR 1 cut(s) 886
PpuMI RGGWCCY 1 cut(s) 775
PscI ACATGT 1 cut(s) 717
Psp5II RGGWCCY 1 cut(s) 775
Psp6I CCWGG 2 cut(s) 455, 1084
PspCI CACGTG 1 cut(s) 886
PspFI CCCAGC 2 cut(s) 334, 1210
PspGI CCWGG 2 cut(s) 455, 1084
PspN4I GGNNCC 5 cut(s) 461, 904, 1107, 1165, 1354
PspPI GGNCC 9 cut(s) 460, 775, 807, 826, 974, 1082, 1088, 1164, 1226
PspPPI RGGWCCY 1 cut(s) 775
PstI CTGCAG 1 cut(s) 1185
PsuI RGATCY 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 716
SaqAI TTAA 4 cut(s) 309, 471, 564, 911
SatI GCNGC 3 cut(s) 1121, 1132, 1281
Sau3AI GATC 3 cut(s) 86, 820, 1369
Sau96I GGNCC 9 cut(s) 460, 775, 807, 826, 974, 1082, 1088, 1164, 1226
SchI GAGTC 1 cut(s) 1047
ScrFI CCNGG 5 cut(s) 457, 678, 972, 1086, 1172
SduI GDGCHC 2 cut(s) 1118, 1276
SfaNI GCATC 6 cut(s) 29, 35, 243, 439, 715, 727
SfcI CTRYAG 2 cut(s) 90, 1181
SfoI GGCGCC 1 cut(s) 1354
SgrAI CRCCGGYG 1 cut(s) 1108
SinI GGWCC 2 cut(s) 460, 775
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 2 cut(s) 779, 965
SmoI CTYRAG 2 cut(s) 779, 965
SsiI CCGC 8 cut(s) 131, 294, 463, 1118, 1121, 1131, 1134, 1281
SspDI GGCGCC 1 cut(s) 1352
SspI AATATT 1 cut(s) 1192
SspMI CTAG 4 cut(s) 33, 443, 494, 1056
StyD4I CCNGG 5 cut(s) 455, 676, 970, 1084, 1170
TaaI ACNGT 3 cut(s) 179, 303, 1267
TaiI ACGT 3 cut(s) 321, 888, 1035
TaqI TCGA 4 cut(s) 868, 1006, 1061, 1368
TauI GCSGC 3 cut(s) 1123, 1134, 1283
TfiI GAWTC 2 cut(s) 161, 1325
Tru1I TTAA 4 cut(s) 309, 471, 564, 911
Tru9I TTAA 4 cut(s) 309, 471, 564, 911
TscAI CASTG 4 cut(s) 308, 1104, 1185, 1366
TseFI GTSAC 3 cut(s) 119, 241, 886
Tsp45I GTSAC 3 cut(s) 119, 241, 886
TspDTI ATGAA 5 cut(s) 388, 595, 770, 972, 1307
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 4 cut(s) 308, 1104, 1185, 1366
Van91I CCANNNNNTGG 1 cut(s) 1379
VpaK11BI GGWCC 2 cut(s) 460, 775
XapI RAATTY 4 cut(s) 7, 354, 533, 991
XbaI TCTAGA 1 cut(s) 32
XceI RCATGY 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 1299
XspI CTAG 4 cut(s) 33, 443, 494, 1056
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.