Rh1BG411000

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009930
Physical Location & Seq
Reverse (-)
53290051 .. 53291690
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG411000.1

Sequence Viewer

Length: 345 bp
ATGTTCAAGGCTAGTTCGTCCATACCCGGGAACGGGAGCTCAAGCCCACCGAAACACCCAAATCCGTTGCCGCCACAAGGAGGGAAGCAATATTGTTTGCCCAAAACTGGGGCTGACACAGAGGCCTTACAGAAAAATATTGATTATGTTTGTGGGCTGGGATTTGATTGTGGCCCGATTAAACAAGGTGGGCCGTGCTTTATGCCCAACACAGTTAGAGCCCATGCAGCTTATGCCATGAACATATACTATCAAGCAACAGGAAGGAACGGCTATGATTGCAATTTTGAGCAAACAGGAGCCACCACTACCGTCGATCCAAGCTATGGAAAATGCAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17 X8

Protein Analysis

114

Amino Acids

12.16

Weight (kDa)

8.53

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 31 - 100 2e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 326
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 311
AfiI CCNNNNNNNGG 8 cut(s) 27, 32, 33, 77, 80, 107, 108, 326
AgsI TTSAA 1 cut(s) 7
AluBI AGCT 3 cut(s) 39, 230, 324
AluI AGCT 3 cut(s) 39, 230, 324
Alw21I GWGCWC 1 cut(s) 41
AlwI GGATC 1 cut(s) 311
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 3 cut(s) 123, 172, 191
ApeKI GCWGC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 173, 191
AsuC2I CCSGG 2 cut(s) 27, 28
AvaI CYCGRG 1 cut(s) 26
BanII GRGCYC 2 cut(s) 41, 223
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 239
BceAI ACGGC 2 cut(s) 178, 286
BcnI CCSGG 2 cut(s) 27, 28
BfaI CTAG 1 cut(s) 12
BisI GCNGC 2 cut(s) 71, 228
BlsI GCNGC 2 cut(s) 72, 229
Bme1390I CCNGG 2 cut(s) 27, 28
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 173, 191
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 2 cut(s) 27, 28
BmrI ACTGGG 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 25
BpuMI CCSGG 2 cut(s) 27, 28
BsaJI CCNNGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 8 cut(s) 27, 32, 33, 77, 80, 107, 108, 326
Bse1I ACTGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 26
BseLI CCNNNNNNNGG 8 cut(s) 27, 32, 33, 77, 80, 107, 108, 326
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 239
BseYI CCCAGC 1 cut(s) 157
BshFI GGCC 3 cut(s) 125, 174, 193
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 8 cut(s) 27, 32, 33, 77, 80, 107, 108, 326
BsnI GGCC 3 cut(s) 125, 174, 193
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 41, 223
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 1 cut(s) 71
BspANI GGCC 3 cut(s) 125, 174, 193
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 214, 313
BstAPI GCANNNNNTGC 1 cut(s) 233
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 3 cut(s) 227, 233, 279
BstSCI CCNGG 2 cut(s) 25, 26
BstV1I GCAGC 1 cut(s) 239
BsuRI GGCC 3 cut(s) 125, 174, 193
Cfr13I GGNCC 2 cut(s) 173, 191
Cfr9I CCCGGG 1 cut(s) 26
CviAII CATG 2 cut(s) 224, 238
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Ecl136II GAGCTC 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 125
Eco24I GRGCYC 2 cut(s) 41, 223
Eco53kI GAGCTC 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 39
EcoT38I GRGCYC 2 cut(s) 41, 223
FaeI CATG 2 cut(s) 227, 241
FatI CATG 2 cut(s) 223, 237
Fnu4HI GCNGC 2 cut(s) 71, 228
FriOI GRGCYC 2 cut(s) 41, 223
Fsp4HI GCNGC 2 cut(s) 71, 228
FspBI CTAG 1 cut(s) 12
GluI GCNGC 2 cut(s) 71, 228
GsaI CCCAGC 1 cut(s) 161
HaeIII GGCC 3 cut(s) 125, 174, 193
HapII CCGG 1 cut(s) 27
Hin1II CATG 2 cut(s) 227, 241
HpaII CCGG 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 2 cut(s) 214, 313
HpyCH4V TGCA 3 cut(s) 227, 282, 336
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 233, 279
Hsp92II CATG 2 cut(s) 227, 241
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 2 cut(s) 36, 299
LpnPI CCDG 5 cut(s) 40, 93, 143, 246, 282
Lsp1109I GCAGC 1 cut(s) 239
MaeI CTAG 1 cut(s) 12
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MhlI GDGCHC 2 cut(s) 41, 223
MluCI AATT 1 cut(s) 283
MnlI CCTC 2 cut(s) 74, 115
MseI TTAA 1 cut(s) 180
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 27, 28
MwoI GCNNNNNNNGC 3 cut(s) 227, 233, 279
NciI CCSGG 2 cut(s) 27, 28
NdeII GATC 1 cut(s) 316
NlaIII CATG 2 cut(s) 227, 241
NlaIV GGNNCC 1 cut(s) 301
PceI AGGCCT 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 2 cut(s) 72, 229
Psp124BI GAGCTC 1 cut(s) 41
PspFI CCCAGC 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 173, 191
SacI GAGCTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 71, 228
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 2 cut(s) 173, 191
ScrFI CCNGG 2 cut(s) 27, 28
SduI GDGCHC 2 cut(s) 41, 223
SetI ASST 4 cut(s) 41, 190, 232, 326
SmaI CCCGGG 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 1 cut(s) 283
SseBI AGGCCT 1 cut(s) 125
SsiI CCGC 1 cut(s) 71
SspI AATATT 2 cut(s) 92, 139
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 41
StuI AGGCCT 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 25, 26
TaaI ACNGT 2 cut(s) 214, 313
TaqI TCGA 1 cut(s) 315
TasI AATT 1 cut(s) 283
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 54
TspMI CCCGGG 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 326
XmaI CCCGGG 1 cut(s) 26
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.