Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009930

Physical Location & Seq

Genomic Coordinates Forward (+)

1476459 .. 1478487

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCGAACGACCTCCCTCCACCGTCCCAAGTTGCACACTTCCTTCTACAATCCACCATCATCAACCGTGTTAGGCTCTTTGACACCAACCCTCAAATACTCCAAGCCTTTGCTCATTCCGGCATTCCACTAACAATCACTATCCCCAATGACCAAATCCCCCACTTCACCAAACTAAGGTTTGCCCAAAATTGGCTCAAAACCAATGTCATACCTTACACCCCGGCCACCAACATAGTCCGCATCTTAATAGGAAATGAAGTACTCTCAACCGCCAACAAGTTGTTCATTGGGAACCTAGTCCCTGCTATGCTAACCCTTCACATGGCACTTGTAGATGCCTCTTTGGACCGCCAAATCAAAGTCTCTACTCCACACTCTCTAGGCATTCTCTCAAGCTCAAGCCCACCATCCACAGGTAAGTTTAGGCAAGGCTATGACACCCATGTCCTTAAACCACTACTCACTTTCTTGAGAATCACCAAGTCTCCTTTCATGGTAAACCCCTATCCATATTTCGGATACTCGGCGGATACGCTCAACTACGCACTTTTCCGACCAAATTCTGGTGTGGTTGATCCCAATACTAAACTCCTATACACCAACATGTTGGATGCACAATTAGATGCTATATATTCAGCTTTAAAGATTGTGGGCTTTCCAGATCTCGAAATTGTTATAGCTGAAACGGGCTGGCCTTCGAAGGGTGATGCAGGCCAAGTTGGTGTTGACCCAGACAGTGCAGCGGACTACAACCAAAATCTCATTCGTCACATGACATCCGGTAATGGCACCCCATTGATGCCAAACCGGACTTTTGAGACTTACATCTTTGCCCTGTTCAATGAAAATCTCAAGCCCGGCCCAACATGCGAGAGATATTTTGGGCTTTTCAGACCCGACATGACGCCAGCCTACAATGTCGGAATCCTACGGCACACGGCTAGTTCATCCATACCCGGGAACGGGAGCTCAAGCCCACCGAAAAACCCAAATCCGTTGCCGCCACATGGAGGGAAGCAATATTGTTTGCCCAAAACTGGGGCTGACACAGAGGCCTTGCAGAAGAATATTGATTATGTTTGTGGGCTGGGATTTGATTGTGGCCCGATTAAACAAGGTGGGCCGTGCTTTATGCCCAACACTGTTAGAGCCCATGCAGCTTATGCCATGAACATATACTATCAAGCAACGGGAAGGAACGGTAATGATTGCAATTTTGAGCAAACAGGAGCCACCACTACCGTCGATCCAAGCTATGGAAAATGCAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

425

Amino Acids

46.52

Weight (kDa)

8.54

Isoelectric Point (pI)

29.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 308	7.5e-75	Glycosyl hydrolases family 17
X8	PF07983	342 - 411	9.7e-19	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24318 AT5G24318 AT5G24318 AT5G24318
fragaria_vesca	FvH4_7g32100
malus_domestica	MD01G1223700.v1.1 MD07G1294400.v1.1
prunus_persica	Prupe.2G314200_v2.0.a1
pyrus_communis	pycom07g26720
rosa_chinensis	RchiOBHm_Chr1g0381691
rosa_laevigata	RLG00000026214
rosa_multiflora	Rmu_co8442059.1_g000001 Rmu_sc0004579.1_g000005 Rmu_ssc0000316.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278510
rosa_rugosa	Rorug01G0430400
rosa_samantha	Rh1AG453800 Rh1BG411000 Rh1CG425400 Rh1DG442800
rosa_wichuraiana	Rw1G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	791
AccB7I	CCANNNNNTGG	2 cut(s)	566, 1259
AciI	CCGC	6 cut(s)	241, 273, 352, 530, 746, 1004
AclWI	GGATC	2 cut(s)	572, 1244
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	562
AcyI	GRCGYC	1 cut(s)	908
AfaI	GTAC	1 cut(s)	264
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	1 cut(s)	844
AjuI	GAANNNNNNNTTGG	6 cut(s)	269, 301, 476, 508, 750, 782
AluBI	AGCT	6 cut(s)	399, 641, 683, 972, 1163, 1257
AluI	AGCT	6 cut(s)	399, 641, 683, 972, 1163, 1257
Alw21I	GWGCWC	1 cut(s)	974
Alw26I	GTCTC	3 cut(s)	370, 492, 815
AlwI	GGATC	2 cut(s)	572, 1244
Ama87I	CYCGRG	1 cut(s)	959
AoxI	GGCC	7 cut(s)	225, 695, 715, 862, 1056, 1105, 1124
ApeKI	GCWGC	2 cut(s)	743, 1160
ApoI	RAATTY	1 cut(s)	562
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspS9I	GGNCC	4 cut(s)	349, 863, 1106, 1124
AsuC2I	CCSGG	4 cut(s)	224, 861, 960, 961
AsuHPI	GGTGA	3 cut(s)	160, 472, 719
AsuII	TTCGAA	1 cut(s)	701
AvaI	CYCGRG	1 cut(s)	959
AvaII	GGWCC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	791
BanII	GRGCYC	2 cut(s)	974, 1156
Bbv12I	GWGCWC	1 cut(s)	974
BbvI	GCAGC	2 cut(s)	755, 1172
BccI	CCATC	2 cut(s)	65, 418
BceAI	ACGGC	3 cut(s)	950, 957, 1111
BciVI	GTATCC	2 cut(s)	515, 526
BcnI	CCSGG	4 cut(s)	224, 861, 960, 961
BcoDI	GTCTC	3 cut(s)	370, 492, 815
BfaI	CTAG	3 cut(s)	299, 383, 945
BfuI	GTATCC	2 cut(s)	515, 526
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	3 cut(s)	744, 1004, 1161
BlsI	GCNGC	3 cut(s)	745, 1005, 1162
BmcAI	AGTACT	1 cut(s)	264
Bme1390I	CCNGG	4 cut(s)	224, 861, 960, 961
Bme18I	GGWCC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	959
BmgT120I	GGNCC	4 cut(s)	349, 863, 1106, 1124
BmiI	GGNNCC	3 cut(s)	296, 793, 1234
BmrFI	CCNGG	4 cut(s)	224, 861, 960, 961
BmrI	ACTGGG	1 cut(s)	1050
BmsI	GCATC	6 cut(s)	252, 328, 604, 616, 700, 792
BmuI	ACTGGG	1 cut(s)	1050
Bpu14I	TTCGAA	1 cut(s)	701
BpuEI	CTTGAG	5 cut(s)	379, 385, 493, 839, 958
BpuMI	CCSGG	4 cut(s)	224, 861, 960, 961
BsaHI	GRCGYC	1 cut(s)	908
BsaJI	CCNNGG	2 cut(s)	222, 959
BsaWI	WCCGGW	2 cut(s)	782, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bse1I	ACTGG	1 cut(s)	1045
BseDI	CCNNGG	2 cut(s)	222, 959
BseGI	GGATG	4 cut(s)	410, 619, 779, 950
BseNI	ACTGG	1 cut(s)	1045
BseXI	GCAGC	2 cut(s)	755, 1172
BseYI	CCCAGC	1 cut(s)	1090
BsgI	GTGCAG	1 cut(s)	762
BshFI	GGCC	7 cut(s)	227, 697, 717, 864, 1058, 1107, 1126
BshNI	GGYRCC	1 cut(s)	791
BsiHKAI	GWGCWC	1 cut(s)	974
BsiHKCI	CYCGRG	1 cut(s)	959
BsiSI	CCGG	6 cut(s)	120, 224, 783, 811, 861, 960
BslFI	GGGAC	2 cut(s)	10, 287
BsmAI	GTCTC	3 cut(s)	370, 492, 815
BsmFI	GGGAC	2 cut(s)	10, 287
BsmI	GAATGC	2 cut(s)	123, 387
BsnI	GGCC	7 cut(s)	227, 697, 717, 864, 1058, 1107, 1126
BsoBI	CYCGRG	1 cut(s)	959
Bsp119I	TTCGAA	1 cut(s)	701
Bsp1286I	GDGCHC	2 cut(s)	974, 1156
Bsp143I	GATC	3 cut(s)	577, 664, 1249
BspACI	CCGC	6 cut(s)	241, 273, 352, 530, 746, 1004
BspANI	GGCC	7 cut(s)	227, 697, 717, 864, 1058, 1107, 1126
BspLI	GGNNCC	3 cut(s)	296, 793, 1234
BspPI	GGATC	2 cut(s)	572, 1244
BspT104I	TTCGAA	1 cut(s)	701
BspT107I	GGYRCC	1 cut(s)	791
BsrI	ACTGG	1 cut(s)	1045
BssECI	CCNNGG	2 cut(s)	222, 959
BssMI	GATC	3 cut(s)	577, 664, 1249
BssNI	GRCGYC	1 cut(s)	908
Bst4CI	ACNGT	6 cut(s)	24, 68, 740, 1147, 1205, 1246
BstACI	GRCGYC	1 cut(s)	908
BstAPI	GCANNNNNTGC	1 cut(s)	1166
BstBI	TTCGAA	1 cut(s)	701
BstC8I	GCNNGC	3 cut(s)	695, 715, 912
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	4 cut(s)	410, 619, 779, 950
BstKTI	GATC	3 cut(s)	580, 667, 1252
BstMAI	GTCTC	3 cut(s)	370, 492, 815
BstMBI	GATC	3 cut(s)	577, 664, 1249
BstMWI	GCNNNNNNNGC	3 cut(s)	870, 1160, 1166
BstNSI	RCATGY	2 cut(s)	610, 873
BstSCI	CCNGG	4 cut(s)	222, 859, 958, 959
BstV1I	GCAGC	2 cut(s)	755, 1172
BstX2I	RGATCY	1 cut(s)	664
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	664
BsuI	GTATCC	2 cut(s)	515, 526
BsuRI	GGCC	7 cut(s)	227, 697, 717, 864, 1058, 1107, 1126
BtsCI	GGATG	4 cut(s)	410, 619, 779, 950
BtsIMutI	CAGTG	2 cut(s)	745, 1143
Cac8I	GCNNGC	3 cut(s)	695, 715, 912
Cfr13I	GGNCC	4 cut(s)	349, 863, 1106, 1124
Cfr9I	CCCGGG	1 cut(s)	959
CseI	GACGC	1 cut(s)	916
Csp6I	GTAC	1 cut(s)	263
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	3 cut(s)	579, 666, 1251
DpnII	GATC	3 cut(s)	577, 664, 1249
DraI	TTTAAA	1 cut(s)	645
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	545
Ecl136II	GAGCTC	1 cut(s)	972
Eco147I	AGGCCT	1 cut(s)	1058
Eco24I	GRGCYC	2 cut(s)	974, 1156
Eco47I	GGWCC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	972
Eco88I	CYCGRG	1 cut(s)	959
EcoICRI	GAGCTC	1 cut(s)	972
EcoT38I	GRGCYC	2 cut(s)	974, 1156
FaqI	GGGAC	2 cut(s)	10, 287
Fnu4HI	GCNGC	3 cut(s)	744, 1004, 1161
FokI	GGATG	4 cut(s)	397, 626, 766, 937
FriOI	GRGCYC	2 cut(s)	974, 1156
Fsp4HI	GCNGC	3 cut(s)	744, 1004, 1161
FspBI	CTAG	3 cut(s)	299, 383, 945
GluI	GCNGC	3 cut(s)	744, 1004, 1161
GsaI	CCCAGC	1 cut(s)	1094
HaeIII	GGCC	7 cut(s)	227, 697, 717, 864, 1058, 1107, 1126
HapII	CCGG	6 cut(s)	120, 224, 783, 811, 861, 960
HgaI	GACGC	1 cut(s)	916
Hin1I	GRCGYC	1 cut(s)	908
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HinfI	GANTC	2 cut(s)	477, 927
HpaII	CCGG	6 cut(s)	120, 224, 783, 811, 861, 960
HphI	GGTGA	3 cut(s)	160, 472, 719
Hpy166II	GTNNAC	2 cut(s)	502, 730
Hpy188I	TCNGA	4 cut(s)	521, 557, 896, 926
Hpy188III	TCNNGA	3 cut(s)	472, 662, 668
Hpy8I	GTNNAC	2 cut(s)	502, 730
Hpy99I	CGWCG	1 cut(s)	1250
HpyAV	CCTTC	5 cut(s)	53, 329, 697, 708, 1191
HpyCH4III	ACNGT	6 cut(s)	24, 68, 740, 1147, 1205, 1246
HpyCH4V	TGCA	8 cut(s)	35, 617, 713, 743, 1063, 1160, 1215, 1269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	870, 1160, 1166
HpyF3I	CTNAG	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	908
Kzo9I	GATC	3 cut(s)	577, 664, 1249
LmnI	GCTCC	2 cut(s)	969, 1232
Lsp1109I	GCAGC	2 cut(s)	755, 1172
LweI	GCATC	6 cut(s)	252, 328, 604, 616, 700, 792
MaeI	CTAG	3 cut(s)	299, 383, 945
MaeIII	GTNAC	1 cut(s)	770
MalI	GATC	3 cut(s)	579, 666, 1251
MboI	GATC	3 cut(s)	577, 664, 1249
MboII	GAAGA	1 cut(s)	1078
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	2 cut(s)	974, 1156
MluCI	AATT	5 cut(s)	190, 562, 620, 672, 1216
MmeI	TCCRAC	3 cut(s)	580, 591, 904
MnlI	CCTC	6 cut(s)	23, 27, 102, 352, 1007, 1048
MseI	TTAA	4 cut(s)	248, 453, 644, 1113
MslI	CAYNNNNRTG	1 cut(s)	605
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	6 cut(s)	120, 224, 783, 811, 861, 960
MspR9I	CCNGG	4 cut(s)	224, 861, 960, 961
Mva1269I	GAATGC	2 cut(s)	123, 387
MwoI	GCNNNNNNNGC	3 cut(s)	870, 1160, 1166
NciI	CCSGG	4 cut(s)	224, 861, 960, 961
NdeII	GATC	3 cut(s)	577, 664, 1249
NlaIV	GGNNCC	3 cut(s)	296, 793, 1234
NmeAIII	GCCGAG	1 cut(s)	506
NmuCI	GTSAC	1 cut(s)	770
NspI	RCATGY	2 cut(s)	610, 873
NspV	TTCGAA	1 cut(s)	701
PceI	AGGCCT	1 cut(s)	1058
PciI	ACATGT	1 cut(s)	606
PctI	GAATGC	2 cut(s)	123, 387
PfeI	GAWTC	2 cut(s)	477, 927
PflMI	CCANNNNNTGG	2 cut(s)	566, 1259
PkrI	GCNGC	3 cut(s)	745, 1005, 1162
PscI	ACATGT	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	974
PspFI	CCCAGC	1 cut(s)	1090
PspN4I	GGNNCC	3 cut(s)	296, 793, 1234
PspPI	GGNCC	4 cut(s)	349, 863, 1106, 1124
PsuI	RGATCY	1 cut(s)	664
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	605
SacI	GAGCTC	1 cut(s)	974
SaqAI	TTAA	4 cut(s)	248, 453, 644, 1113
SatI	GCNGC	3 cut(s)	744, 1004, 1161
Sau3AI	GATC	3 cut(s)	577, 664, 1249
Sau96I	GGNCC	4 cut(s)	349, 863, 1106, 1124
ScaI	AGTACT	1 cut(s)	264
ScrFI	CCNGG	4 cut(s)	224, 861, 960, 961
SduI	GDGCHC	2 cut(s)	974, 1156
SfaNI	GCATC	6 cut(s)	252, 328, 604, 616, 700, 792
SfuI	TTCGAA	1 cut(s)	701
SinI	GGWCC	1 cut(s)	349
SmaI	CCCGGG	1 cut(s)	961
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	5 cut(s)	394, 400, 472, 854, 973
SmoI	CTYRAG	5 cut(s)	394, 400, 472, 854, 973
Sse9I	AATT	5 cut(s)	190, 562, 620, 672, 1216
SseBI	AGGCCT	1 cut(s)	1058
SsiI	CCGC	6 cut(s)	241, 273, 352, 530, 746, 1004
SspI	AATATT	2 cut(s)	1025, 1072
SspMI	CTAG	3 cut(s)	299, 383, 945
SstI	GAGCTC	1 cut(s)	974
StuI	AGGCCT	1 cut(s)	1058
StyD4I	CCNGG	4 cut(s)	222, 859, 958, 959
TaaI	ACNGT	6 cut(s)	24, 68, 740, 1147, 1205, 1246
TaqI	TCGA	3 cut(s)	669, 701, 1248
TasI	AATT	5 cut(s)	190, 562, 620, 672, 1216
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	1 cut(s)	1006
TfiI	GAWTC	2 cut(s)	477, 927
Tru1I	TTAA	4 cut(s)	248, 453, 644, 1113
Tru9I	TTAA	4 cut(s)	248, 453, 644, 1113
TscAI	CASTG	2 cut(s)	745, 1150
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	2 cut(s)	743, 1160
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	6 cut(s)	273, 277, 484, 861, 939, 1187
TspGWI	ACGGA	1 cut(s)	987
TspMI	CCCGGG	1 cut(s)	959
TspRI	CASTG	2 cut(s)	745, 1150
Van91I	CCANNNNNTGG	2 cut(s)	566, 1259
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	2 cut(s)	610, 873
XmaI	CCCGGG	1 cut(s)	959
XspI	CTAG	3 cut(s)	299, 383, 945
ZrmI	AGTACT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.