FvH4_7g32100

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
23113181 .. 23115317
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32100.t1

Sequence Viewer

Length: 1527 bp
ATGTCATACTCGCCCGATTCCAAAGTAAAGCATCTAGAGCTCAAATACTTATACTTCACCAATGCTACCCCATTGTCATATCCACCATTGTTCTTCTTCTTCACCTCCCCAACGTACGCATCACTACTACTCATCATGGAAAATCGTCGGCCTGATATCACACTAACCAGAGGAAGCACTATCGTTTTGCTGTTTCTTGCCTCGATCTTCAATGTTCAAGGAGTGCAAGGATCTATAGGGGTGAACTATGGCACGGTGGCGAACGACCTCCCGCCACCGTCCCAAGTCGCGCACTTCCTTCTACAATCCACCATCATCAACCGTGTTAGGCTCTTTGACACCAACCCTCAAATACTCCAAGCCTTTGCTCATTCCGGCATTCCCCTAACAATAACGGTCCCCAATGACCAAATCCCCCACTTCACAAAACTAAGGTTTGCCCAAAATTGGCTCAATACCAATGTCATACCATACACCCCGGCCACCAACATAGTCCGCATCTTGCTAGGAAATGAAGTGCTCTCCACCACCAACAAGTTGTTCATTGGGAATTTAGTCCCTGCTATGCAAACCCTTCACATGGCACTTGTAGATGCCTCCTTGGACCGTCAAATCAAAGTCTCTACTCCACATTCTCTAGGCATTCTCTCAAGCTCAAGTCCACCATCCTCAGGTAAGTTTAGGCAAGGCTATGACACCCATGTCCTTAAACCACTACTCACTTTTTTGAGAGTCACTAAGGCTCCTTTCATGGTTAACCCCTATCCCTATTTCGGATACTCGGGCGACACGCTCGATTATGCACTTTTCCGACCAAATGCCGGTGTGGTTGATCCCAATACTAAACTTCTATACACCAACATGTTGGATGCCCAATTAGATGCTATATATTCAGCTTTAAAGGTTGTGGGCTTTGCGGACCTCGAAATTGTTATAGCCGAAACAGGCTGGCCTTCGAAGGGTGATGCAGGCCAAGTTGGAGTTGACCTAGAGAGCGCAGCCGACTACAACCAAAATCTCATTCGTCACATGACATCCGGTAATGGTACCCCGTTGATGCCAAACAGGACTTTTGAGACCTACATATTTGCCCTCTTCAATGAAAACCTCAAGCCCGGCCCAACAAGCGAGAGAAACTTTGGGCTTTTCCGACCCGACATGACACCGGTCTACAATGTTGGCGTCCTCCGGCACACGGCTAGTTCGTCTACACCGGGGAATGAAAGCCCAAGCCCAAAGCAAACTCCGTCGCCGCTGCATGCAGGAAAACAATATTGTTTGCCCAAAAATGGGGCAGACACAGAGGCCTTGCAAAAGAACATTGATTATGTTTGTGGGCTAGGATTGGATTGTGGCCCGATTAAGCAAGGAGGGCCGTGCTTTATGCCTAACACAGTTAGAGCTCATGCAGCTTATGCCATGAACATATACTATCAAGCAATGGGAAGGAACGGCTATGATTGCGATTTTGAGCAAACGGGAGCCACCACAACCGTCGATCCAGGCTATGGAAAATGCAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

55.84

Weight (kDa)

8.08

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 79 - 393 3.8e-82 Glycosyl hydrolases family 17
X8 PF07983 425 - 494 1.3e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 701
Acc65I GGTACC 1 cut(s) 1046
AccB1I GGYRCC 1 cut(s) 1046
AccB7I CCANNNNNTGG 1 cut(s) 1508
AccI GTMKAC 2 cut(s) 1170, 1208
AccII CGCG 1 cut(s) 290
AciI CCGC 4 cut(s) 272, 496, 917, 1253
AclWI GGATC 3 cut(s) 238, 827, 1493
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 1 cut(s) 550
AcyI GRCGYC 1 cut(s) 1182
AfaI GTAC 2 cut(s) 116, 1048
AflIII ACRYGT 1 cut(s) 861
AgeI ACCGGT 1 cut(s) 1165
AgsI TTSAA 3 cut(s) 211, 218, 1099
AjnI CCWGG 1 cut(s) 1501
AjuI GAANNNNNNNTTGG 4 cut(s) 524, 556, 1005, 1037
AluBI AGCT 5 cut(s) 40, 654, 896, 1403, 1412
AluI AGCT 5 cut(s) 40, 654, 896, 1403, 1412
Alw21I GWGCWC 3 cut(s) 42, 522, 1405
Alw26I GTCTC 2 cut(s) 625, 1070
AlwI GGATC 3 cut(s) 238, 827, 1493
Ama87I CYCGRG 1 cut(s) 781
AoxI GGCC 8 cut(s) 149, 480, 950, 970, 1117, 1305, 1354, 1373
ApeKI GCWGC 3 cut(s) 998, 1255, 1409
ApoI RAATTY 1 cut(s) 550
AsiGI ACCGGT 1 cut(s) 1165
Asp718I GGTACC 1 cut(s) 1046
AspLEI GCGC 2 cut(s) 292, 998
AspS9I GGNCC 6 cut(s) 397, 604, 919, 1118, 1355, 1373
AsuC2I CCSGG 3 cut(s) 479, 1116, 1215
AsuHPI GGTGA 4 cut(s) 49, 94, 253, 974
AsuII TTCGAA 1 cut(s) 956
AvaI CYCGRG 1 cut(s) 781
AvaII GGWCC 3 cut(s) 397, 604, 919
AxyI CCTNAGG 1 cut(s) 670
BanI GGYRCC 1 cut(s) 1046
BanII GRGCYC 2 cut(s) 42, 1405
Bbv12I GWGCWC 3 cut(s) 42, 522, 1405
BbvI GCAGC 3 cut(s) 1010, 1242, 1421
BccI CCATC 2 cut(s) 320, 673
BceAI ACGGC 3 cut(s) 1212, 1360, 1468
BciT130I CCWGG 1 cut(s) 1503
BciVI GTATCC 1 cut(s) 770
BcnI CCSGG 3 cut(s) 479, 1116, 1215
BcoDI GTCTC 2 cut(s) 625, 1070
BfaI CTAG 6 cut(s) 35, 506, 638, 989, 1200, 1340
BfmI CTRYAG 1 cut(s) 234
BfuI GTATCC 1 cut(s) 770
BisI GCNGC 4 cut(s) 999, 1253, 1256, 1410
BlsI GCNGC 4 cut(s) 1000, 1254, 1257, 1411
Bme1390I CCNGG 4 cut(s) 479, 1116, 1215, 1503
Bme18I GGWCC 3 cut(s) 397, 604, 919
BmeT110I CYCGRG 1 cut(s) 781
BmgT120I GGNCC 6 cut(s) 397, 604, 919, 1118, 1355, 1373
BmiI GGNNCC 4 cut(s) 399, 744, 1048, 1483
BmrFI CCNGG 4 cut(s) 479, 1116, 1215, 1503
BmsI GCATC 8 cut(s) 40, 128, 507, 583, 859, 871, 955, 1047
BoxI GACNNNNGTC 1 cut(s) 1166
Bpu14I TTCGAA 1 cut(s) 956
BpuEI CTTGAG 3 cut(s) 634, 640, 1094
BpuMI CCSGG 3 cut(s) 479, 1116, 1215
BsaHI GRCGYC 1 cut(s) 1182
BsaI GGTCTC 1 cut(s) 1070
BsaJI CCNNGG 3 cut(s) 477, 600, 1214
BsaWI WCCGGW 2 cut(s) 1037, 1165
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bse118I RCCGGY 2 cut(s) 821, 1165
Bse21I CCTNAGG 1 cut(s) 670
Bse3DI GCAATG 1 cut(s) 1446
BseBI CCWGG 1 cut(s) 1503
BseDI CCNNGG 3 cut(s) 477, 600, 1214
BseGI GGATG 3 cut(s) 665, 874, 1034
BseMI GCAATG 1 cut(s) 1446
BseMII CTCAG 1 cut(s) 684
BseXI GCAGC 3 cut(s) 1010, 1242, 1421
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 8 cut(s) 151, 482, 952, 972, 1119, 1307, 1356, 1375
BshNI GGYRCC 1 cut(s) 1046
BshTI ACCGGT 1 cut(s) 1165
BsiHKAI GWGCWC 3 cut(s) 42, 522, 1405
BsiHKCI CYCGRG 1 cut(s) 781
BsiSI CCGG 8 cut(s) 375, 479, 822, 1038, 1116, 1166, 1189, 1214
BsiWI CGTACG 1 cut(s) 114
BslFI GGGAC 3 cut(s) 265, 383, 542
BsmAI GTCTC 2 cut(s) 625, 1070
BsmFI GGGAC 3 cut(s) 265, 383, 542
BsmI GAATGC 2 cut(s) 378, 642
BsnI GGCC 8 cut(s) 151, 482, 952, 972, 1119, 1307, 1356, 1375
Bso31I GGTCTC 1 cut(s) 1070
BsoBI CYCGRG 1 cut(s) 781
Bsp119I TTCGAA 1 cut(s) 956
Bsp1286I GDGCHC 3 cut(s) 42, 522, 1405
Bsp143I GATC 4 cut(s) 204, 230, 832, 1498
BspACI CCGC 4 cut(s) 272, 496, 917, 1253
BspANI GGCC 8 cut(s) 151, 482, 952, 972, 1119, 1307, 1356, 1375
BspCNI CTCAG 1 cut(s) 683
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 4 cut(s) 399, 744, 1048, 1483
BspPI GGATC 3 cut(s) 238, 827, 1493
BspT104I TTCGAA 1 cut(s) 956
BspT107I GGYRCC 1 cut(s) 1046
BspTNI GGTCTC 1 cut(s) 1070
BsrDI GCAATG 1 cut(s) 1446
BsrFI RCCGGY 2 cut(s) 821, 1165
BssAI RCCGGY 2 cut(s) 821, 1165
BssECI CCNNGG 3 cut(s) 477, 600, 1214
BssMI GATC 4 cut(s) 204, 230, 832, 1498
BssNI GRCGYC 1 cut(s) 1182
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 1 cut(s) 1503
Bst4CI ACNGT 7 cut(s) 256, 279, 323, 397, 608, 1396, 1495
Bst6I CTCTTC 1 cut(s) 1100
BstACI GRCGYC 1 cut(s) 1182
BstAPI GCANNNNNTGC 1 cut(s) 1415
BstBI TTCGAA 1 cut(s) 956
BstC8I GCNNGC 3 cut(s) 950, 970, 1260
BstDEI CTNAG 3 cut(s) 431, 670, 738
BstF5I GGATG 3 cut(s) 665, 874, 1034
BstFNI CGCG 1 cut(s) 290
BstHHI GCGC 2 cut(s) 292, 998
BstKTI GATC 4 cut(s) 207, 233, 835, 1501
BstMAI GTCTC 2 cut(s) 625, 1070
BstMBI GATC 4 cut(s) 204, 230, 832, 1498
BstMWI GCNNNNNNNGC 6 cut(s) 37, 1125, 1372, 1409, 1415, 1461
BstNI CCWGG 1 cut(s) 1503
BstNSI RCATGY 2 cut(s) 865, 1262
BstPAI GACNNNNGTC 1 cut(s) 1166
BstSCI CCNGG 4 cut(s) 477, 1114, 1213, 1501
BstSFI CTRYAG 1 cut(s) 234
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 3 cut(s) 1010, 1242, 1421
BstX2I RGATCY 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 865
BstYI RGATCY 1 cut(s) 230
Bsu36I CCTNAGG 1 cut(s) 670
BsuI GTATCC 1 cut(s) 770
BsuRI GGCC 8 cut(s) 151, 482, 952, 972, 1119, 1307, 1356, 1375
BtsCI GGATG 3 cut(s) 665, 874, 1034
Cac8I GCNNGC 3 cut(s) 950, 970, 1260
CfoI GCGC 2 cut(s) 292, 998
Cfr10I RCCGGY 2 cut(s) 821, 1165
Cfr13I GGNCC 6 cut(s) 397, 604, 919, 1118, 1355, 1373
CseI GACGC 1 cut(s) 1171
Csp6I GTAC 2 cut(s) 115, 1047
CspAI ACCGGT 1 cut(s) 1165
CviQI GTAC 2 cut(s) 115, 1047
DdeI CTNAG 3 cut(s) 431, 670, 738
DpnI GATC 4 cut(s) 206, 232, 834, 1500
DpnII GATC 4 cut(s) 204, 230, 832, 1498
DraI TTTAAA 1 cut(s) 900
DrdI GACNNNNNNGTC 1 cut(s) 701
DseDI GACNNNNNNGTC 1 cut(s) 701
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 1100
EarI CTCTTC 1 cut(s) 1100
Ecl136II GAGCTC 2 cut(s) 40, 1403
Eco130I CCWWGG 1 cut(s) 600
Eco147I AGGCCT 1 cut(s) 1307
Eco24I GRGCYC 2 cut(s) 42, 1405
Eco31I GGTCTC 1 cut(s) 1070
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 3 cut(s) 397, 604, 919
Eco53kI GAGCTC 2 cut(s) 40, 1403
Eco81I CCTNAGG 1 cut(s) 670
Eco88I CYCGRG 1 cut(s) 781
EcoICRI GAGCTC 2 cut(s) 40, 1403
EcoRII CCWGG 1 cut(s) 1501
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 42, 1405
ErhI CCWWGG 1 cut(s) 600
FaqI GGGAC 3 cut(s) 265, 383, 542
FauI CCCGC 1 cut(s) 279
FblI GTMKAC 2 cut(s) 1170, 1208
Fnu4HI GCNGC 4 cut(s) 999, 1253, 1256, 1410
FokI GGATG 3 cut(s) 652, 881, 1021
FriOI GRGCYC 2 cut(s) 42, 1405
Fsp4HI GCNGC 4 cut(s) 999, 1253, 1256, 1410
FspBI CTAG 6 cut(s) 35, 506, 638, 989, 1200, 1340
GlaI GCGC 2 cut(s) 291, 997
GluI GCNGC 4 cut(s) 999, 1253, 1256, 1410
HaeIII GGCC 8 cut(s) 151, 482, 952, 972, 1119, 1307, 1356, 1375
HapII CCGG 8 cut(s) 375, 479, 822, 1038, 1116, 1166, 1189, 1214
HgaI GACGC 1 cut(s) 1171
HhaI GCGC 2 cut(s) 292, 998
Hin1I GRCGYC 1 cut(s) 1182
Hin6I GCGC 2 cut(s) 290, 996
HinP1I GCGC 2 cut(s) 290, 996
HincII GTYRAC 2 cut(s) 757, 985
HindII GTYRAC 2 cut(s) 757, 985
HinfI GANTC 2 cut(s) 17, 732
HpaI GTTAAC 1 cut(s) 757
HpaII CCGG 8 cut(s) 375, 479, 822, 1038, 1116, 1166, 1189, 1214
HphI GGTGA 4 cut(s) 49, 94, 253, 974
Hpy166II GTNNAC 6 cut(s) 244, 662, 757, 985, 1171, 1209
Hpy188I TCNGA 3 cut(s) 776, 812, 1151
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 6 cut(s) 244, 662, 757, 985, 1171, 1209
Hpy99I CGWCG 3 cut(s) 150, 1252, 1499
HpyAV CCTTC 5 cut(s) 308, 584, 952, 963, 1440
HpyCH4III ACNGT 7 cut(s) 256, 279, 323, 397, 608, 1396, 1495
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 9 cut(s) 226, 568, 803, 968, 1258, 1262, 1312, 1409, 1518
HpyF10VI GCNNNNNNNGC 6 cut(s) 37, 1125, 1372, 1409, 1415, 1461
HpyF3I CTNAG 3 cut(s) 431, 670, 738
HpySE526I ACGT 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 1182
HspAI GCGC 2 cut(s) 290, 996
KpnI GGTACC 1 cut(s) 1050
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 4 cut(s) 204, 230, 832, 1498
LmnI GCTCC 2 cut(s) 748, 1481
Lsp1109I GCAGC 3 cut(s) 1010, 1242, 1421
LweI GCATC 8 cut(s) 40, 128, 507, 583, 859, 871, 955, 1047
MaeI CTAG 6 cut(s) 35, 506, 638, 989, 1200, 1340
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 733, 1025
MalI GATC 4 cut(s) 206, 232, 834, 1500
MboI GATC 4 cut(s) 204, 230, 832, 1498
MboII GAAGA 5 cut(s) 85, 88, 91, 199, 1087
MflI RGATCY 1 cut(s) 230
MhlI GDGCHC 3 cut(s) 42, 522, 1405
MluCI AATT 4 cut(s) 445, 550, 875, 927
MlyI GAGTC 1 cut(s) 741
MmeI TCCRAC 4 cut(s) 835, 846, 958, 1174
MseI TTAA 4 cut(s) 708, 756, 899, 1362
MslI CAYNNNNRTG 1 cut(s) 860
MspA1I CMGCKG 1 cut(s) 1255
MspI CCGG 8 cut(s) 375, 479, 822, 1038, 1116, 1166, 1189, 1214
MspR9I CCNGG 4 cut(s) 479, 1116, 1215, 1503
Mva1269I GAATGC 2 cut(s) 378, 642
MvaI CCWGG 1 cut(s) 1503
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 6 cut(s) 37, 1125, 1372, 1409, 1415, 1461
NciI CCSGG 3 cut(s) 479, 1116, 1215
NdeII GATC 4 cut(s) 204, 230, 832, 1498
NlaIV GGNNCC 4 cut(s) 399, 744, 1048, 1483
NmuCI GTSAC 2 cut(s) 733, 1025
NspI RCATGY 2 cut(s) 865, 1262
NspV TTCGAA 1 cut(s) 956
PaeI GCATGC 1 cut(s) 1262
PceI AGGCCT 1 cut(s) 1307
PciI ACATGT 1 cut(s) 861
PcsI WCGNNNNNNNCGW 1 cut(s) 1202
PctI GAATGC 2 cut(s) 378, 642
PfeI GAWTC 1 cut(s) 17
Pfl23II CGTACG 1 cut(s) 114
PflMI CCANNNNNTGG 1 cut(s) 1508
PinAI ACCGGT 1 cut(s) 1165
PkrI GCNGC 4 cut(s) 1000, 1254, 1257, 1411
PleI GAGTC 1 cut(s) 740
PpsI GAGTC 1 cut(s) 740
PscI ACATGT 1 cut(s) 861
PshAI GACNNNNGTC 1 cut(s) 1166
Psp124BI GAGCTC 2 cut(s) 42, 1405
Psp6I CCWGG 1 cut(s) 1501
PspGI CCWGG 1 cut(s) 1501
PspLI CGTACG 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 399, 744, 1048, 1483
PspPI GGNCC 6 cut(s) 397, 604, 919, 1118, 1355, 1373
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 2 cut(s) 116, 1048
RsaNI GTAC 2 cut(s) 115, 1047
RseI CAYNNNNRTG 1 cut(s) 860
SacI GAGCTC 2 cut(s) 42, 1405
SaqAI TTAA 4 cut(s) 708, 756, 899, 1362
SatI GCNGC 4 cut(s) 999, 1253, 1256, 1410
Sau3AI GATC 4 cut(s) 204, 230, 832, 1498
Sau96I GGNCC 6 cut(s) 397, 604, 919, 1118, 1355, 1373
SchI GAGTC 1 cut(s) 741
ScrFI CCNGG 4 cut(s) 479, 1116, 1215, 1503
SduI GDGCHC 3 cut(s) 42, 522, 1405
SfaNI GCATC 8 cut(s) 40, 128, 507, 583, 859, 871, 955, 1047
SfcI CTRYAG 1 cut(s) 234
SfuI TTCGAA 1 cut(s) 956
SinI GGWCC 3 cut(s) 397, 604, 919
SmiMI CAYNNNNRTG 1 cut(s) 860
SmlI CTYRAG 3 cut(s) 649, 655, 1109
SmoI CTYRAG 3 cut(s) 649, 655, 1109
SphI GCATGC 1 cut(s) 1262
Sse9I AATT 4 cut(s) 445, 550, 875, 927
SseBI AGGCCT 1 cut(s) 1307
SsiI CCGC 4 cut(s) 272, 496, 917, 1253
SspI AATATT 1 cut(s) 1274
SspMI CTAG 6 cut(s) 35, 506, 638, 989, 1200, 1340
SstI GAGCTC 2 cut(s) 42, 1405
StuI AGGCCT 1 cut(s) 1307
StyD4I CCNGG 4 cut(s) 477, 1114, 1213, 1501
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 7 cut(s) 256, 279, 323, 397, 608, 1396, 1495
TaiI ACGT 1 cut(s) 116
TaqI TCGA 5 cut(s) 203, 795, 924, 956, 1497
TasI AATT 4 cut(s) 445, 550, 875, 927
TauI GCSGC 1 cut(s) 1255
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 4 cut(s) 708, 756, 899, 1362
Tru9I TTAA 4 cut(s) 708, 756, 899, 1362
TseFI GTSAC 2 cut(s) 733, 1025
TseI GCWGC 3 cut(s) 998, 1255, 1409
Tsp45I GTSAC 2 cut(s) 733, 1025
TspDTI ATGAA 6 cut(s) 528, 532, 739, 1116, 1236, 1436
TspGWI ACGGA 1 cut(s) 1236
Van91I CCANNNNNTGG 1 cut(s) 1508
VpaK11BI GGWCC 3 cut(s) 397, 604, 919
XapI RAATTY 1 cut(s) 550
XbaI TCTAGA 1 cut(s) 34
XceI RCATGY 2 cut(s) 865, 1262
XmiI GTMKAC 2 cut(s) 1170, 1208
XspI CTAG 6 cut(s) 35, 506, 638, 989, 1200, 1340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.