Rh1AG453800

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009930
Physical Location & Seq
Reverse (-)
67291072 .. 67293042
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG453800.1

Sequence Viewer

Length: 1155 bp
ATGGCAAATCCTCGGCCCGATTTCGCATTAACTGGAGGAACCACTATAGTTTTGCTGTTTCTTGCCTCAATCTTCAATGTTCAAGGAGTCCAAGGATCTATAGGAGTGAACTATGGCACAATGGCGAACGACCTCCCTCCACCGTCCCAAGTTGCACACTTCCTTCTACAATCCACCATCATCAACCGTGTTAGGCTCTTTGACACCAACCCTCAAATACTCCAAGCCTTTGCTCATTCCGGCATTCCACTAACAATCACTATCCCCAATGACCAAATCCCCCACTTCACCAAACTAAGGTTTGCCCAAAATTGGCTCAAAACCAATGTCATACCTTACACCCCGGCCACCAACATAGTCCGCATCTTAATAGGAAATGAAGTACTCTCAACCGCCAACAAGTTGTTCATGGGGAACCTAGTCCCTGCTATGCTAACCCTTCACATGGCACTTGTAGATGCCTCTTTGGACCGCCAAATCAAAATCTCTACTCCACACTCTCTAGGCATTCTCTCAAGCTCAAGCCCGCCATCCACAGGTAAGTTTAGGCAAGGCTATGACACCCATGTCCTTAAACCACTACTCACTTTCTTGAGAATCACCAAGTCTCCTTTCATGGTAAACCCCTATCCATATTTCGGATACTCGGCGGACACACTCAACTACGCACTTTTCCGACCAAATTCCGGTGTGGTTGATCCCAATACTAAACTCCTATACACCAACATGTTGGATGCACAATTAGATGCTATATATTCAGCTTTAAAGATTGTGGGCTTTTCAGATCTCGAAATTGTTATAGCTGAAACGGGCTGGCCTTCGAAGGGTGATGCAGGCCAAGTTGGTGTTGACCCAGACAGTGCAGCGGACTACAACCAAAATCTCATTCGTCACATGACATCCGGTAATGGCACCCCATTGATGCCAAACCGGACTTTTGAGACTTACATCTTTGCCCTGTTCAATGAAAATCTCAAGCCCGGCCCAACATGCGAGAGAAATTTTGGGCTTTTCCGACCCGACATGACACCGGCCTACAATGTCGGAATCCTACGGCACACGGTAGCTGCCGCAACCGATAACCAAACTAAAAATGTTCCCTTTTTCATGTCATCATTTTGTATCTGCTTGATTGGTTTGTGGACTTGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17 X8

Protein Analysis

384

Amino Acids

42.3

Weight (kDa)

8.35

Isoelectric Point (pI)

24.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 34 - 348 1.6e-79 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 566
AccB1I GGYRCC 1 cut(s) 911
AciI CCGC 7 cut(s) 361, 393, 472, 527, 650, 866, 1071
AclWI GGATC 2 cut(s) 103, 692
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 2 cut(s) 682, 1000
AfaI GTAC 1 cut(s) 384
AfiI CCNNNNNNNGG 7 cut(s) 297, 312, 445, 536, 638, 686, 824
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 3 cut(s) 76, 83, 964
AjuI GAANNNNNNNTTGG 6 cut(s) 389, 421, 596, 628, 870, 902
AluBI AGCT 4 cut(s) 519, 761, 803, 1067
AluI AGCT 4 cut(s) 519, 761, 803, 1067
Alw26I GTCTC 2 cut(s) 612, 935
AlwI GGATC 2 cut(s) 103, 692
AoxI GGCC 6 cut(s) 14, 345, 815, 835, 982, 1032
ApeKI GCWGC 2 cut(s) 863, 1067
ApoI RAATTY 2 cut(s) 682, 1000
ArsI GACNNNNNNTTYG 2 cut(s) 312, 344
AspS9I GGNCC 3 cut(s) 15, 469, 983
AsuC2I CCSGG 2 cut(s) 344, 981
AsuHPI GGTGA 3 cut(s) 280, 592, 839
AsuII TTCGAA 1 cut(s) 821
AvaII GGWCC 1 cut(s) 469
BanI GGYRCC 1 cut(s) 911
BbvI GCAGC 2 cut(s) 875, 1054
BccI CCATC 2 cut(s) 185, 538
BceAI ACGGC 1 cut(s) 1070
BciVI GTATCC 1 cut(s) 635
BcnI CCSGG 2 cut(s) 344, 981
BcoDI GTCTC 2 cut(s) 612, 935
BfaI CTAG 2 cut(s) 419, 503
BfmI CTRYAG 2 cut(s) 45, 99
BfuI GTATCC 1 cut(s) 635
BglII AGATCT 1 cut(s) 784
BisI GCNGC 3 cut(s) 864, 1068, 1071
BlsI GCNGC 3 cut(s) 865, 1069, 1072
BmcAI AGTACT 1 cut(s) 384
Bme1390I CCNGG 2 cut(s) 344, 981
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 3 cut(s) 15, 469, 983
BmiI GGNNCC 3 cut(s) 40, 416, 913
BmrFI CCNGG 2 cut(s) 344, 981
BmsI GCATC 6 cut(s) 372, 448, 724, 736, 820, 912
BpmI CTGGAG 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 821
BpuEI CTTGAG 4 cut(s) 499, 505, 613, 959
BpuMI CCSGG 2 cut(s) 344, 981
BsaJI CCNNGG 3 cut(s) 11, 91, 342
BsaWI WCCGGW 3 cut(s) 686, 902, 930
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 7 cut(s) 297, 312, 445, 536, 638, 686, 824
Bse118I RCCGGY 1 cut(s) 1030
Bse1I ACTGG 1 cut(s) 37
BseDI CCNNGG 3 cut(s) 11, 91, 342
BseGI GGATG 3 cut(s) 530, 739, 899
BseLI CCNNNNNNNGG 7 cut(s) 297, 312, 445, 536, 638, 686, 824
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 875, 1054
BsgI GTGCAG 1 cut(s) 882
BshFI GGCC 6 cut(s) 16, 347, 817, 837, 984, 1034
BshNI GGYRCC 1 cut(s) 911
BsiSI CCGG 7 cut(s) 240, 344, 687, 903, 931, 981, 1031
BslFI GGGAC 2 cut(s) 130, 407
BslI CCNNNNNNNGG 7 cut(s) 297, 312, 445, 536, 638, 686, 824
BsmAI GTCTC 2 cut(s) 612, 935
BsmFI GGGAC 2 cut(s) 130, 407
BsmI GAATGC 2 cut(s) 243, 507
BsnI GGCC 6 cut(s) 16, 347, 817, 837, 984, 1034
Bsp119I TTCGAA 1 cut(s) 821
Bsp143I GATC 4 cut(s) 95, 697, 784, 1149
BspACI CCGC 7 cut(s) 361, 393, 472, 527, 650, 866, 1071
BspANI GGCC 6 cut(s) 16, 347, 817, 837, 984, 1034
BspLI GGNNCC 3 cut(s) 40, 416, 913
BspPI GGATC 2 cut(s) 103, 692
BspT104I TTCGAA 1 cut(s) 821
BspT107I GGYRCC 1 cut(s) 911
BsrFI RCCGGY 1 cut(s) 1030
BsrI ACTGG 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 1030
BssECI CCNNGG 3 cut(s) 11, 91, 342
BssMI GATC 4 cut(s) 95, 697, 784, 1149
BssT1I CCWWGG 1 cut(s) 91
Bst4CI ACNGT 4 cut(s) 144, 188, 860, 1063
BstBI TTCGAA 1 cut(s) 821
BstC8I GCNNGC 3 cut(s) 527, 815, 835
BstDEI CTNAG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 530, 739, 899
BstKTI GATC 4 cut(s) 98, 700, 787, 1152
BstMAI GTCTC 2 cut(s) 612, 935
BstMBI GATC 4 cut(s) 95, 697, 784, 1149
BstMWI GCNNNNNNNGC 1 cut(s) 990
BstNSI RCATGY 2 cut(s) 730, 993
BstSCI CCNGG 2 cut(s) 342, 979
BstSFI CTRYAG 2 cut(s) 45, 99
BstV1I GCAGC 2 cut(s) 875, 1054
BstX2I RGATCY 3 cut(s) 95, 784, 1149
BstXI CCANNNNNNTGG 1 cut(s) 730
BstYI RGATCY 3 cut(s) 95, 784, 1149
BsuI GTATCC 1 cut(s) 635
BsuRI GGCC 6 cut(s) 16, 347, 817, 837, 984, 1034
BtsCI GGATG 3 cut(s) 530, 739, 899
BtsIMutI CAGTG 1 cut(s) 865
Cac8I GCNNGC 3 cut(s) 527, 815, 835
Cfr10I RCCGGY 1 cut(s) 1030
Cfr13I GGNCC 3 cut(s) 15, 469, 983
Csp6I GTAC 1 cut(s) 383
CviAII CATG 9 cut(s) 409, 445, 566, 616, 727, 895, 990, 1024, 1108
CviQI GTAC 1 cut(s) 383
DdeI CTNAG 1 cut(s) 296
DpnI GATC 4 cut(s) 97, 699, 786, 1151
DpnII GATC 4 cut(s) 95, 697, 784, 1149
DraI TTTAAA 1 cut(s) 765
DrdI GACNNNNNNGTC 1 cut(s) 566
DseDI GACNNNNNNGTC 1 cut(s) 566
EaeI YGGCCR 1 cut(s) 345
EciI GGCGGA 1 cut(s) 665
Eco130I CCWWGG 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 9 cut(s) 412, 448, 569, 619, 730, 898, 993, 1027, 1111
FaqI GGGAC 2 cut(s) 130, 407
FatI CATG 9 cut(s) 408, 444, 565, 615, 726, 894, 989, 1023, 1107
FauI CCCGC 1 cut(s) 534
Fnu4HI GCNGC 3 cut(s) 864, 1068, 1071
FokI GGATG 3 cut(s) 517, 746, 886
Fsp4HI GCNGC 3 cut(s) 864, 1068, 1071
FspBI CTAG 2 cut(s) 419, 503
GluI GCNGC 3 cut(s) 864, 1068, 1071
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 6 cut(s) 16, 347, 817, 837, 984, 1034
HapII CCGG 7 cut(s) 240, 344, 687, 903, 931, 981, 1031
Hin1II CATG 9 cut(s) 412, 448, 569, 619, 730, 898, 993, 1027, 1111
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HinfI GANTC 3 cut(s) 87, 597, 1047
HpaII CCGG 7 cut(s) 240, 344, 687, 903, 931, 981, 1031
HphI GGTGA 3 cut(s) 280, 592, 839
Hpy166II GTNNAC 4 cut(s) 109, 622, 850, 1143
Hpy188I TCNGA 6 cut(s) 641, 677, 784, 1016, 1046, 1154
Hpy188III TCNNGA 2 cut(s) 592, 788
Hpy8I GTNNAC 4 cut(s) 109, 622, 850, 1143
HpyAV CCTTC 4 cut(s) 173, 449, 817, 828
HpyCH4III ACNGT 4 cut(s) 144, 188, 860, 1063
HpyCH4V TGCA 4 cut(s) 155, 737, 833, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 990
HpyF3I CTNAG 1 cut(s) 296
Hsp92II CATG 9 cut(s) 412, 448, 569, 619, 730, 898, 993, 1027, 1111
Kzo9I GATC 4 cut(s) 95, 697, 784, 1149
Lsp1109I GCAGC 2 cut(s) 875, 1054
LweI GCATC 6 cut(s) 372, 448, 724, 736, 820, 912
MaeI CTAG 2 cut(s) 419, 503
MaeIII GTNAC 1 cut(s) 890
MalI GATC 4 cut(s) 97, 699, 786, 1151
MboI GATC 4 cut(s) 95, 697, 784, 1149
MboII GAAGA 1 cut(s) 64
MflI RGATCY 3 cut(s) 95, 784, 1149
MluCI AATT 5 cut(s) 310, 682, 740, 792, 1000
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 4 cut(s) 700, 711, 1024, 1039
MnlI CCTC 7 cut(s) 21, 29, 76, 143, 147, 222, 472
MseI TTAA 4 cut(s) 29, 368, 573, 764
MslI CAYNNNNRTG 1 cut(s) 725
MspA1I CMGCKG 1 cut(s) 866
MspI CCGG 7 cut(s) 240, 344, 687, 903, 931, 981, 1031
MspR9I CCNGG 2 cut(s) 344, 981
Mva1269I GAATGC 2 cut(s) 243, 507
MwoI GCNNNNNNNGC 1 cut(s) 990
NciI CCSGG 2 cut(s) 344, 981
NdeII GATC 4 cut(s) 95, 697, 784, 1149
NlaIII CATG 9 cut(s) 412, 448, 569, 619, 730, 898, 993, 1027, 1111
NlaIV GGNNCC 3 cut(s) 40, 416, 913
NmeAIII GCCGAG 1 cut(s) 626
NmuCI GTSAC 1 cut(s) 890
NspI RCATGY 2 cut(s) 730, 993
NspV TTCGAA 1 cut(s) 821
PciI ACATGT 1 cut(s) 726
PctI GAATGC 2 cut(s) 243, 507
PfeI GAWTC 2 cut(s) 597, 1047
PkrI GCNGC 3 cut(s) 865, 1069, 1072
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PscI ACATGT 1 cut(s) 726
PspN4I GGNNCC 3 cut(s) 40, 416, 913
PspPI GGNCC 3 cut(s) 15, 469, 983
PsuI RGATCY 3 cut(s) 95, 784, 1149
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
RseI CAYNNNNRTG 1 cut(s) 725
SaqAI TTAA 4 cut(s) 29, 368, 573, 764
SatI GCNGC 3 cut(s) 864, 1068, 1071
Sau3AI GATC 4 cut(s) 95, 697, 784, 1149
Sau96I GGNCC 3 cut(s) 15, 469, 983
ScaI AGTACT 1 cut(s) 384
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 2 cut(s) 344, 981
SetI ASST 9 cut(s) 135, 302, 337, 420, 521, 541, 763, 805, 1069
SfaNI GCATC 6 cut(s) 372, 448, 724, 736, 820, 912
SfcI CTRYAG 2 cut(s) 45, 99
SfuI TTCGAA 1 cut(s) 821
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 725
SmlI CTYRAG 4 cut(s) 514, 520, 592, 974
SmoI CTYRAG 4 cut(s) 514, 520, 592, 974
Sse9I AATT 5 cut(s) 310, 682, 740, 792, 1000
SsiI CCGC 7 cut(s) 361, 393, 472, 527, 650, 866, 1071
SspMI CTAG 2 cut(s) 419, 503
StyD4I CCNGG 2 cut(s) 342, 979
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 4 cut(s) 144, 188, 860, 1063
TaqI TCGA 2 cut(s) 789, 821
TasI AATT 5 cut(s) 310, 682, 740, 792, 1000
TatI WGTACW 1 cut(s) 382
TauI GCSGC 1 cut(s) 1073
TfiI GAWTC 2 cut(s) 597, 1047
Tru1I TTAA 4 cut(s) 29, 368, 573, 764
Tru9I TTAA 4 cut(s) 29, 368, 573, 764
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 1 cut(s) 890
TseI GCWGC 2 cut(s) 863, 1067
Tsp45I GTSAC 1 cut(s) 890
TspDTI ATGAA 5 cut(s) 393, 397, 604, 981, 1096
TspRI CASTG 1 cut(s) 865
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 2 cut(s) 682, 1000
XceI RCATGY 2 cut(s) 730, 993
XspI CTAG 2 cut(s) 419, 503
ZrmI AGTACT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.