Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009930

Physical Location & Seq

Genomic Coordinates Reverse (-)

29564501 .. 29566513

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G314200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGCAAATTCTCTTCCCAATTTTGCATCATCTGGATGCTGTGTTTTGCTCCTTCTTGTCTCAATCTTCATTCAAGGAGGAGTGCAAGGATCTATTGGGGTGAACTATGGCACGGTGGCAAATGACCTCCCTCCACCAACCCACGTCGCCCATTTCCTTTTAGAATCCACCATCATCAACCGTGTTAGGCTTTTTGATGCAAACCCTGATATACTACAAGCCTTTGCTCACACTGGCATTGCAGTCACAATCACTGTCCCAAATGACCAAATCCCCCACCTTACCAAGCTTAGCTTTGCCCAACAATGGCTCAAATCCAATGTCCAACCTTACGTCCAGGCCACCAACATAGTCCGCATCTTAATAGGCAATGAAGTTTTGTCCACCACAAACAAGTTGTTCATTGCAGGCCTTGTTCCTGCCATGCAAACCCTCCACGCCGCCCTTGTCGATGCTTCGTTGGACCGCAAGATTAAAGTCTCTACCCCACACTCTCTAGGCATTCTTTCAAGTTCAAGCCCACCGTCCTCTGGCAAATTTAGGCAAGGCTATGACGTCCATGTGCTTAAGCCGTTGCTTAGTTTCTTGAAAGCCACCAATTCTCCTTTCATGGTGAACCCCTATCCTTATTTCGGATTCTCTGCGGACACACTTGATTACGCACTTTTCAGGCCAAATTCCGGCGTCTTTGATGACAAAACGAAACTCCTTTACACCAACATGTTGGATGCACAATTAGATGCTGTTTTTTCAGCCATGAAGCTTTTGGGCTTTGTGGACCTTGAGATTGTTATAGCCGAAACGGGCTGGCCATCAGAGTGTGATCCGGCCCAAGTTGGTGTTGACCCACAGAGTGCAGCGGATTACAATGGAAATCTCATTCGTCATGTGACATCCGGTAATGGCACCCCGTTGATGCCAAACCGGACTTTTGAGACGTACATCTTTGCCCTCTTCAATGAAAATCTCAAGCCCGGCCCAACATGCGAGAGGAATTTCGGGCTTTTCCGGCCCGACATGACACCAGTTTACAATGTCGGGATCCTCCGGCACACGGCTAGTTCATCTACACCTTTGAACCCAGGCCCAGGCCCAGGCCCAGTTCCAGTTCCAGGTCTTGCACCAGCGAGCCCATCACCGCCGCATGGCGAGAAACTATGGTGTCTCCCGAAGAGGGGAGCTGACGCGGAGGCCTTGCAGAGGAATATTGATTATGTTTGTGGGCTGGGATTGAATTGTGGGCCAATCAAACAAGGTGGGCCGTGCTTTATGCCCAACACAGTTCGAGCCCATGCAGCATATGCCATGAACCGCTACTTTCAAGCAATGGGAAGGAACGGTTATGATTGTGAGTTTGAAGGAACTGGAGCCACCACTGCCGTCGATCCAAGCTATGGAAAGTGCAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

471

Amino Acids

50.68

Weight (kDa)

6.82

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24318 AT5G24318 AT5G24318 AT5G24318
fragaria_vesca	FvH4_7g32100
malus_domestica	MD01G1223700.v1.1 MD07G1294400.v1.1
prunus_persica	Prupe.2G314200_v2.0.a1
pyrus_communis	pycom07g26720
rosa_chinensis	RchiOBHm_Chr1g0381691
rosa_laevigata	RLG00000026214
rosa_multiflora	Rmu_co8442059.1_g000001 Rmu_sc0004579.1_g000005 Rmu_ssc0000316.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278510
rosa_rugosa	Rorug01G0430400
rosa_samantha	Rh1AG453800 Rh1BG411000 Rh1CG425400 Rh1DG442800
rosa_wichuraiana	Rw1G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	905
AccB7I	CCANNNNNTGG	1 cut(s)	1394
AccII	CGCG	1 cut(s)	1187
AciI	CCGC	9 cut(s)	355, 441, 466, 644, 860, 1139, 1142, 1187, 1312
AclWI	GGATC	5 cut(s)	97, 818, 1036, 1049, 1379
AcoI	YGGCCR	1 cut(s)	809
AcsI	RAATTY	4 cut(s)	7, 536, 676, 994
AcyI	GRCGYC	2 cut(s)	555, 684
AdeI	CACNNNGTG	1 cut(s)	854
AfaI	GTAC	2 cut(s)	941, 1409
AflII	CTTAAG	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	9 cut(s)	74, 510, 516, 589, 958, 1078, 1234, 1322, 1358
AjiI	CACGTC	1 cut(s)	145
AjnI	CCWGG	5 cut(s)	336, 1081, 1087, 1093, 1111
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AluBI	AGCT	5 cut(s)	289, 294, 763, 1181, 1392
AluI	AGCT	5 cut(s)	289, 294, 763, 1181, 1392
Alw26I	GTCTC	4 cut(s)	64, 484, 929, 1169
AlwI	GGATC	5 cut(s)	97, 818, 1036, 1049, 1379
ApeKI	GCWGC	2 cut(s)	857, 1295
ApoI	RAATTY	4 cut(s)	7, 536, 676, 994
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
AsuC2I	CCSGG	1 cut(s)	975
AsuHPI	GGTGA	3 cut(s)	112, 625, 1128
AvaII	GGWCC	2 cut(s)	463, 778
BalI	TGGCCA	1 cut(s)	811
BamHI	GGATCC	1 cut(s)	1041
BanI	GGYRCC	1 cut(s)	905
BanII	GRGCYC	2 cut(s)	1133, 1291
BbvI	GCAGC	2 cut(s)	869, 1307
BccI	CCATC	3 cut(s)	179, 820, 1141
BceAI	ACGGC	4 cut(s)	556, 1071, 1246, 1364
BciT130I	CCWGG	5 cut(s)	338, 1083, 1089, 1095, 1113
BcnI	CCSGG	1 cut(s)	975
BcoDI	GTCTC	4 cut(s)	64, 484, 929, 1169
BfaI	CTAG	2 cut(s)	497, 1059
BfrI	CTTAAG	1 cut(s)	566
BisI	GCNGC	4 cut(s)	441, 858, 1142, 1296
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	4 cut(s)	442, 859, 1143, 1297
BmcAI	AGTACT	1 cut(s)	1409
Bme1390I	CCNGG	6 cut(s)	338, 975, 1083, 1089, 1095, 1113
Bme18I	GGWCC	2 cut(s)	463, 778
BmgBI	CACGTC	1 cut(s)	145
BmiI	GGNNCC	3 cut(s)	907, 1043, 1369
BmrFI	CCNGG	6 cut(s)	338, 975, 1083, 1089, 1095, 1113
BmrI	ACTGGG	1 cut(s)	1094
BmsI	GCATC	8 cut(s)	26, 35, 187, 366, 442, 718, 730, 906
BmuI	ACTGGG	1 cut(s)	1094
BpmI	CTGGAG	1 cut(s)	1386
Bpu1102I	GCTNAGC	1 cut(s)	290
BpuEI	CTTGAG	2 cut(s)	803, 953
BpuMI	CCSGG	1 cut(s)	975
BsaHI	GRCGYC	2 cut(s)	555, 684
BsaJI	CCNNGG	3 cut(s)	1081, 1087, 1093
BsaWI	WCCGGW	2 cut(s)	896, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	586, 616
Bse1I	ACTGG	5 cut(s)	238, 1025, 1100, 1106, 1369
Bse3DI	GCAATG	4 cut(s)	237, 376, 402, 1332
BseBI	CCWGG	5 cut(s)	338, 1083, 1089, 1095, 1113
BseDI	CCNNGG	3 cut(s)	1081, 1087, 1093
BseGI	GGATG	3 cut(s)	41, 733, 893
BseMI	GCAATG	4 cut(s)	237, 376, 402, 1332
BseNI	ACTGG	5 cut(s)	238, 1025, 1100, 1106, 1369
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	869, 1307
BseYI	CCCAGC	1 cut(s)	1225
BsgI	GTGCAG	1 cut(s)	876
Bsh1236I	CGCG	1 cut(s)	1187
BshNI	GGYRCC	1 cut(s)	905
BsiSI	CCGG	7 cut(s)	681, 827, 897, 925, 975, 1009, 1048
BslFI	GGGAC	1 cut(s)	242
BsmAI	GTCTC	4 cut(s)	64, 484, 929, 1169
BsmBI	CGTCTC	1 cut(s)	929
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	1133, 1291
Bsp143I	GATC	4 cut(s)	89, 823, 1041, 1384
Bsp1720I	GCTNAGC	1 cut(s)	290
BspACI	CCGC	9 cut(s)	355, 441, 466, 644, 860, 1139, 1142, 1187, 1312
BspFNI	CGCG	1 cut(s)	1187
BspLI	GGNNCC	3 cut(s)	907, 1043, 1369
BspPI	GGATC	5 cut(s)	97, 818, 1036, 1049, 1379
BspT107I	GGYRCC	1 cut(s)	905
BspTI	CTTAAG	1 cut(s)	566
BsrDI	GCAATG	4 cut(s)	237, 376, 402, 1332
BsrI	ACTGG	5 cut(s)	238, 1025, 1100, 1106, 1369
BssECI	CCNNGG	3 cut(s)	1081, 1087, 1093
BssMI	GATC	4 cut(s)	89, 823, 1041, 1384
BssNI	GRCGYC	2 cut(s)	555, 684
Bst2UI	CCWGG	5 cut(s)	338, 1083, 1089, 1095, 1113
Bst4CI	ACNGT	6 cut(s)	115, 182, 256, 525, 1282, 1340
Bst6I	CTCTTC	3 cut(s)	18, 959, 1166
BstACI	GRCGYC	2 cut(s)	555, 684
BstAFI	CTTAAG	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	1301
BstC8I	GCNNGC	3 cut(s)	409, 809, 1129
BstDEI	CTNAG	2 cut(s)	290, 578
BstENI	CCTNNNNNAGG	1 cut(s)	1198
BstF5I	GGATG	3 cut(s)	41, 733, 893
BstFNI	CGCG	1 cut(s)	1187
BstKTI	GATC	4 cut(s)	92, 826, 1044, 1387
BstMAI	GTCTC	4 cut(s)	64, 484, 929, 1169
BstMBI	GATC	4 cut(s)	89, 823, 1041, 1384
BstMWI	GCNNNNNNNGC	5 cut(s)	984, 1009, 1295, 1301, 1376
BstNI	CCWGG	5 cut(s)	338, 1083, 1089, 1095, 1113
BstNSI	RCATGY	2 cut(s)	724, 987
BstSCI	CCNGG	6 cut(s)	336, 973, 1081, 1087, 1093, 1111
BstUI	CGCG	1 cut(s)	1187
BstV1I	GCAGC	2 cut(s)	869, 1307
BstX2I	RGATCY	2 cut(s)	89, 1041
BstXI	CCANNNNNNTGG	1 cut(s)	724
BstYI	RGATCY	2 cut(s)	89, 1041
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	41, 733, 893
BtsI	GCAGTG	1 cut(s)	1374
BtsIMutI	CAGTG	3 cut(s)	231, 252, 1374
Cac8I	GCNNGC	3 cut(s)	409, 809, 1129
CseI	GACGC	2 cut(s)	673, 1193
Csp6I	GTAC	2 cut(s)	940, 1408
CspCI	CAANNNNNGTGG	2 cut(s)	1237, 1272
CviQI	GTAC	2 cut(s)	940, 1408
DdeI	CTNAG	2 cut(s)	290, 578
DpnI	GATC	4 cut(s)	91, 825, 1043, 1386
DpnII	GATC	4 cut(s)	89, 823, 1041, 1384
DraIII	CACNNNGTG	1 cut(s)	854
EaeI	YGGCCR	1 cut(s)	809
Eam1104I	CTCTTC	3 cut(s)	18, 959, 1166
EarI	CTCTTC	3 cut(s)	18, 959, 1166
Eco147I	AGGCCT	2 cut(s)	411, 1193
Eco24I	GRGCYC	2 cut(s)	1133, 1291
Eco47I	GGWCC	2 cut(s)	463, 778
EcoNI	CCTNNNNNAGG	1 cut(s)	1198
EcoRII	CCWGG	5 cut(s)	336, 1081, 1087, 1093, 1111
EcoT38I	GRGCYC	2 cut(s)	1133, 1291
Esp3I	CGTCTC	1 cut(s)	929
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	242
FauNDI	CATATG	1 cut(s)	1300
Fnu4HI	GCNGC	4 cut(s)	441, 858, 1142, 1296
FokI	GGATG	3 cut(s)	48, 740, 880
FriOI	GRGCYC	2 cut(s)	1133, 1291
Fsp4HI	GCNGC	4 cut(s)	441, 858, 1142, 1296
FspBI	CTAG	2 cut(s)	497, 1059
GluI	GCNGC	4 cut(s)	441, 858, 1142, 1296
GsaI	CCCAGC	1 cut(s)	1229
GsuI	CTGGAG	1 cut(s)	1386
HapII	CCGG	7 cut(s)	681, 827, 897, 925, 975, 1009, 1048
HgaI	GACGC	2 cut(s)	673, 1193
Hin1I	GRCGYC	2 cut(s)	555, 684
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HindIII	AAGCTT	2 cut(s)	287, 761
HinfI	GANTC	2 cut(s)	164, 636
HpaII	CCGG	7 cut(s)	681, 827, 897, 925, 975, 1009, 1048
HphI	GGTGA	3 cut(s)	112, 625, 1128
Hpy166II	GTNNAC	6 cut(s)	103, 384, 616, 778, 844, 1030
Hpy188I	TCNGA	2 cut(s)	635, 817
Hpy188III	TCNNGA	4 cut(s)	33, 586, 1039, 1168
Hpy8I	GTNNAC	6 cut(s)	103, 384, 616, 778, 844, 1030
Hpy99I	CGWCG	2 cut(s)	149, 1385
HpyAV	CCTTC	3 cut(s)	62, 1326, 1352
HpyCH4III	ACNGT	6 cut(s)	115, 182, 256, 525, 1282, 1340
HpyCH4IV	ACGT	4 cut(s)	144, 333, 555, 938
HpyF10VI	GCNNNNNNNGC	5 cut(s)	984, 1009, 1295, 1301, 1376
HpyF3I	CTNAG	2 cut(s)	290, 578
HpySE526I	ACGT	4 cut(s)	144, 333, 555, 938
Hsp92I	GRCGYC	2 cut(s)	555, 684
Kzo9I	GATC	4 cut(s)	89, 823, 1041, 1384
LmnI	GCTCC	3 cut(s)	54, 1178, 1367
Lsp1109I	GCAGC	2 cut(s)	869, 1307
LweI	GCATC	8 cut(s)	26, 35, 187, 366, 442, 718, 730, 906
MaeI	CTAG	2 cut(s)	497, 1059
MaeII	ACGT	4 cut(s)	144, 333, 555, 938
MaeIII	GTNAC	2 cut(s)	244, 889
MalI	GATC	4 cut(s)	91, 825, 1043, 1386
MboI	GATC	4 cut(s)	89, 823, 1041, 1384
MboII	GAAGA	4 cut(s)	5, 58, 946, 1183
MflI	RGATCY	2 cut(s)	89, 1041
MhlI	GDGCHC	2 cut(s)	1133, 1291
MlsI	TGGCCA	1 cut(s)	811
MluCI	AATT	8 cut(s)	7, 19, 536, 598, 676, 734, 994, 1234
MluNI	TGGCCA	1 cut(s)	811
MmeI	TCCRAC	3 cut(s)	349, 441, 705
Mox20I	TGGCCA	1 cut(s)	811
MscI	TGGCCA	1 cut(s)	811
MseI	TTAA	3 cut(s)	362, 474, 567
MslI	CAYNNNNRTG	3 cut(s)	34, 719, 817
Msp20I	TGGCCA	1 cut(s)	811
MspA1I	CMGCKG	1 cut(s)	860
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	7 cut(s)	681, 827, 897, 925, 975, 1009, 1048
MspR9I	CCNGG	6 cut(s)	338, 975, 1083, 1089, 1095, 1113
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	5 cut(s)	338, 1083, 1089, 1095, 1113
MvnI	CGCG	1 cut(s)	1187
MwoI	GCNNNNNNNGC	5 cut(s)	984, 1009, 1295, 1301, 1376
NciI	CCSGG	1 cut(s)	975
NdeI	CATATG	1 cut(s)	1300
NdeII	GATC	4 cut(s)	89, 823, 1041, 1384
NlaIV	GGNNCC	3 cut(s)	907, 1043, 1369
NmuCI	GTSAC	2 cut(s)	244, 889
NspI	RCATGY	2 cut(s)	724, 987
PceI	AGGCCT	2 cut(s)	411, 1193
PciI	ACATGT	1 cut(s)	720
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	164, 636
PflMI	CCANNNNNTGG	1 cut(s)	1394
PkrI	GCNGC	4 cut(s)	442, 859, 1143, 1297
PscI	ACATGT	1 cut(s)	720
Psp6I	CCWGG	5 cut(s)	336, 1081, 1087, 1093, 1111
PspFI	CCCAGC	1 cut(s)	1225
PspGI	CCWGG	5 cut(s)	336, 1081, 1087, 1093, 1111
PspN4I	GGNNCC	3 cut(s)	907, 1043, 1369
PsuI	RGATCY	2 cut(s)	89, 1041
RsaI	GTAC	2 cut(s)	941, 1409
RsaNI	GTAC	2 cut(s)	940, 1408
RseI	CAYNNNNRTG	3 cut(s)	34, 719, 817
SaqAI	TTAA	3 cut(s)	362, 474, 567
SatI	GCNGC	4 cut(s)	441, 858, 1142, 1296
Sau3AI	GATC	4 cut(s)	89, 823, 1041, 1384
ScaI	AGTACT	1 cut(s)	1409
ScrFI	CCNGG	6 cut(s)	338, 975, 1083, 1089, 1095, 1113
SduI	GDGCHC	2 cut(s)	1133, 1291
SfaNI	GCATC	8 cut(s)	26, 35, 187, 366, 442, 718, 730, 906
SinI	GGWCC	2 cut(s)	463, 778
SmiMI	CAYNNNNRTG	3 cut(s)	34, 719, 817
SmlI	CTYRAG	3 cut(s)	566, 782, 968
SmoI	CTYRAG	3 cut(s)	566, 782, 968
Sse9I	AATT	8 cut(s)	7, 19, 536, 598, 676, 734, 994, 1234
SseBI	AGGCCT	2 cut(s)	411, 1193
SsiI	CCGC	9 cut(s)	355, 441, 466, 644, 860, 1139, 1142, 1187, 1312
SspI	AATATT	1 cut(s)	1207
SspMI	CTAG	2 cut(s)	497, 1059
StuI	AGGCCT	2 cut(s)	411, 1193
StyD4I	CCNGG	6 cut(s)	336, 973, 1081, 1087, 1093, 1111
TaaI	ACNGT	6 cut(s)	115, 182, 256, 525, 1282, 1340
TaiI	ACGT	4 cut(s)	147, 336, 558, 941
TaqI	TCGA	3 cut(s)	450, 1285, 1383
TasI	AATT	8 cut(s)	7, 19, 536, 598, 676, 734, 994, 1234
TatI	WGTACW	1 cut(s)	1407
TauI	GCSGC	2 cut(s)	443, 1144
TfiI	GAWTC	2 cut(s)	164, 636
Tru1I	TTAA	3 cut(s)	362, 474, 567
Tru9I	TTAA	3 cut(s)	362, 474, 567
TscAI	CASTG	3 cut(s)	238, 259, 1381
TseFI	GTSAC	2 cut(s)	244, 889
TseI	GCWGC	2 cut(s)	857, 1295
Tsp45I	GTSAC	2 cut(s)	244, 889
TspDTI	ATGAA	8 cut(s)	58, 387, 391, 598, 773, 975, 1053, 1322
TspRI	CASTG	3 cut(s)	238, 259, 1381
Van91I	CCANNNNNTGG	1 cut(s)	1394
Vha464I	CTTAAG	1 cut(s)	566
VpaK11BI	GGWCC	2 cut(s)	463, 778
XagI	CCTNNNNNAGG	1 cut(s)	1198
XapI	RAATTY	4 cut(s)	7, 536, 676, 994
XceI	RCATGY	2 cut(s)	724, 987
XcmI	CCANNNNNNNNNTGG	1 cut(s)	763
XspI	CTAG	2 cut(s)	497, 1059
ZraI	GACGTC	1 cut(s)	556
ZrmI	AGTACT	1 cut(s)	1409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.