Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013842

Physical Location & Seq

Genomic Coordinates Reverse (-)

8754181 .. 8756948

Gene Structure 2768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25265.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGTTGTGGTGGAACTTTGTTCTACCCACTTCTCATAACTCTCTCCGTTGCTCTAATCACTTACAACATCATCATCTCCGCTAATGCTCCTCTCAAACAAGGCTTCCCAGGCCGATCTTCTTCCTCCGATATCTCCATTGACCCAGTCATCGAATTACCACGTGGCGGCGGATCCAGAAACAACGATGGTAAAAGGATAAGACTTTTCCACACGGCGGTGACGGCGTCTGATTCCGTCTATAACACTTGGCAATGTAGAGTTATGTACTATTGGTTCAAAAAGATTCAAGCTTCTGCTGGACCCGGTTCTGAAATGGGTGGGTTTACTCGGATCTTGCATTCCGGTAAACCGGATCAGTATATGGATGAGATTCCTACTTTTGTTGCTCAGCCTTTACCTTCTGGGATGGATCAGGGTTATGTTGTGTTGAATAGGCCATGGGCATTTGTACAATGGCTTCAACAAACAGATATAAAAGAAGATTATATTTTGATGTCTGAGCCTGATCATATCATTGTTAAACCTATACCAAATTTGGCTAAAGATGGGCTTGGAGCTGCGTTTCCTTTCTTTTACATTGAACCGAAAAAGTATGAGAAGGTGTTGAGGAAGTATTATCCTGAAGTGAGAGGACCGGTTACTAATATCGATCCGATAGGAAACTCTCCTGTCATTGTTGGAAAGGATGCTTTGAAGAAGATTGCTCCAACTTGGATGAATGTTTCTTTGGCTATGAAGAAGGATCCTGAAGCAGACAAGGCTTTTGGATGGGTTCTTGAAATGTATGCTTATGCTGTCTCATCTGCATTGCATGGTGTTAGCAATATTCTACACAAAGACTTCATGATTCAGCCACCATGGGATATAGAGGTTGGTGACAAGTACATCATACACTACACTTATGGATGTGATTATGATATGAAGGGTAAATTAACTTATGGGAAAATCGGGGAATGGAGATTTGACAAAAGATCGTATGATAGCAAACCACCACCAAGGAACCTTACAATGCCTCCACCTGGTGTTTCACAAAGTGTGGTAACACTAGTGAAGATGATAAATGAAGCCACGGCCAACATACCAAACTGGGGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

40.97

Weight (kDa)

8.67

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPAT	PF23452	70 - 364	2e-132	Hydroxyproline O-arabinosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25265
fragaria_vesca	FvH4_2g28340
malus_domestica	MD08G1153200.v1.1 MD15G1130300.v1.1
prunus_persica	Prupe.1G485800_v2.0.a1
pyrus_communis	pycom08g13260 pycom15g11750
rosa_chinensis	RchiOBHm_Chr6g0297261
rosa_laevigata	RLG00000011616
rosa_multiflora	Rmu_sc0004535.1_g000002 Rmu_sc0007115.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170700
rosa_rugosa	Rorug06G0270100
rosa_samantha	Rh6BG389600 Rh6CG394800 Rh6DG381500
rosa_wichuraiana	Rw6G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	81, 168, 171, 218
AclWI	GGATC	8 cut(s)	168, 181, 341, 363, 420, 647, 740, 753
AcoI	YGGCCR	1 cut(s)	1074
AcsI	RAATTY	1 cut(s)	535
AcuI	CTGAAG	2 cut(s)	645, 771
AcvI	CACGTG	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	227
AdeI	CACNNNGTG	2 cut(s)	1025, 1037
AfaI	GTAC	3 cut(s)	269, 453, 887
AfiI	CCNNNNNNNGG	4 cut(s)	167, 217, 1022, 1091
AgeI	ACCGGT	1 cut(s)	637
AgsI	TTSAA	7 cut(s)	280, 290, 433, 464, 584, 697, 782
AhlI	ACTAGT	1 cut(s)	1048
AjnI	CCWGG	2 cut(s)	109, 1021
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	293, 560
AluI	AGCT	2 cut(s)	293, 560
Alw26I	GTCTC	1 cut(s)	805
AlwI	GGATC	8 cut(s)	168, 181, 341, 363, 420, 647, 740, 753
AoxI	GGCC	3 cut(s)	112, 437, 1074
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	1 cut(s)	535
ArsI	GACNNNNNNTTYG	2 cut(s)	749, 781
AsiGI	ACCGGT	1 cut(s)	637
AspS9I	GGNCC	2 cut(s)	302, 635
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	232, 890
AvaII	GGWCC	2 cut(s)	302, 635
BamHI	GGATCC	2 cut(s)	173, 745
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BbrPI	CACGTG	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	4 cut(s)	182, 403, 542, 765
BceAI	ACGGC	3 cut(s)	231, 240, 1089
BciT130I	CCWGG	2 cut(s)	111, 1023
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	805
BcuI	ACTAGT	1 cut(s)	1048
BfaI	CTAG	1 cut(s)	1049
BisI	GCNGC	2 cut(s)	169, 561
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	2 cut(s)	170, 562
Bme1390I	CCNGG	3 cut(s)	111, 306, 1023
Bme18I	GGWCC	2 cut(s)	302, 635
BmgT120I	GGNCC	2 cut(s)	302, 635
BmiI	GGNNCC	4 cut(s)	175, 304, 747, 1004
BmrFI	CCNGG	3 cut(s)	111, 306, 1023
BmrI	ACTGGG	2 cut(s)	140, 1099
BmsI	GCATC	1 cut(s)	679
BmuI	ACTGGG	2 cut(s)	140, 1099
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	306
Bsa29I	ATCGAT	1 cut(s)	651
BsaAI	YACGTR	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	5 cut(s)	109, 440, 860, 998, 1071
BsaWI	WCCGGW	3 cut(s)	344, 352, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	1000, 1030
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 217, 1022, 1091
Bse118I	RCCGGY	1 cut(s)	637
Bse1I	ACTGG	2 cut(s)	146, 1094
Bse3DI	GCAATG	2 cut(s)	260, 809
BseBI	CCWGG	2 cut(s)	111, 1023
BseCI	ATCGAT	1 cut(s)	651
BseDI	CCNNGG	5 cut(s)	109, 440, 860, 998, 1071
BseGI	GGATG	6 cut(s)	373, 414, 694, 723, 776, 914
BseLI	CCNNNNNNNGG	4 cut(s)	167, 217, 1022, 1091
BseMI	GCAATG	2 cut(s)	260, 809
BseMII	CTCAG	2 cut(s)	404, 492
BseNI	ACTGG	2 cut(s)	146, 1094
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	547
BshFI	GGCC	3 cut(s)	114, 439, 1076
BshTI	ACCGGT	1 cut(s)	637
BshVI	ATCGAT	1 cut(s)	651
BsiSI	CCGG	4 cut(s)	306, 345, 353, 638
BslI	CCNNNNNNNGG	4 cut(s)	167, 217, 1022, 1091
BsmAI	GTCTC	1 cut(s)	805
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	3 cut(s)	114, 439, 1076
Bsp1407I	TGTACA	1 cut(s)	451
Bsp1720I	GCTNAGC	1 cut(s)	390
Bsp19I	CCATGG	2 cut(s)	440, 860
BspACI	CCGC	4 cut(s)	81, 168, 171, 218
BspANI	GGCC	3 cut(s)	114, 439, 1076
BspCNI	CTCAG	2 cut(s)	403, 493
BspDI	ATCGAT	1 cut(s)	651
BspHI	TCATGA	1 cut(s)	846
BspLI	GGNNCC	4 cut(s)	175, 304, 747, 1004
BspPI	GGATC	8 cut(s)	168, 181, 341, 363, 420, 647, 740, 753
BsrDI	GCAATG	2 cut(s)	260, 809
BsrFI	RCCGGY	1 cut(s)	637
BsrGI	TGTACA	1 cut(s)	451
BsrI	ACTGG	2 cut(s)	146, 1094
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	5 cut(s)	109, 440, 860, 998, 1071
BssNI	GRCGYC	1 cut(s)	227
BssT1I	CCWWGG	3 cut(s)	440, 860, 998
Bst2UI	CCWGG	2 cut(s)	111, 1023
BstACI	GRCGYC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	451
BstBAI	YACGTR	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	390, 501
BstDSI	CCRYGG	3 cut(s)	440, 860, 1071
BstF5I	GGATG	6 cut(s)	373, 414, 694, 723, 776, 914
BstMAI	GTCTC	1 cut(s)	805
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 224, 761
BstNI	CCWGG	2 cut(s)	111, 1023
BstSCI	CCNGG	3 cut(s)	109, 304, 1021
BstV1I	GCAGC	1 cut(s)	547
BstX2I	RGATCY	3 cut(s)	173, 333, 745
BstYI	RGATCY	3 cut(s)	173, 333, 745
Bsu15I	ATCGAT	1 cut(s)	651
BsuRI	GGCC	3 cut(s)	114, 439, 1076
BsuTUI	ATCGAT	1 cut(s)	651
BtgI	CCRYGG	3 cut(s)	440, 860, 1071
BtsCI	GGATG	6 cut(s)	373, 414, 694, 723, 776, 914
CciI	TCATGA	1 cut(s)	846
Cfr10I	RCCGGY	1 cut(s)	637
Cfr13I	GGNCC	2 cut(s)	302, 635
ClaI	ATCGAT	1 cut(s)	651
CseI	GACGC	1 cut(s)	216
CsiI	ACCWGGT	1 cut(s)	1021
Csp6I	GTAC	3 cut(s)	268, 452, 886
CspAI	ACCGGT	1 cut(s)	637
CviAII	CATG	4 cut(s)	441, 815, 847, 861
CviQI	GTAC	3 cut(s)	268, 452, 886
DdeI	CTNAG	2 cut(s)	390, 501
DraIII	CACNNNGTG	2 cut(s)	1025, 1037
EaeI	YGGCCR	1 cut(s)	1074
EciI	GGCGGA	1 cut(s)	186
Eco130I	CCWWGG	3 cut(s)	440, 860, 998
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	302, 635
Eco57I	CTGAAG	2 cut(s)	645, 771
Eco72I	CACGTG	1 cut(s)	164
EcoRII	CCWGG	2 cut(s)	109, 1021
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	440, 860, 998
ErhI	CCWWGG	3 cut(s)	440, 860, 998
FaeI	CATG	4 cut(s)	444, 818, 850, 864
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FatI	CATG	4 cut(s)	440, 814, 846, 860
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	169, 561
FokI	GGATG	6 cut(s)	380, 421, 701, 730, 783, 921
Fsp4HI	GCNGC	2 cut(s)	169, 561
FspBI	CTAG	1 cut(s)	1049
GluI	GCNGC	2 cut(s)	169, 561
HaeIII	GGCC	3 cut(s)	114, 439, 1076
HapII	CCGG	4 cut(s)	306, 345, 353, 638
HgaI	GACGC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	4 cut(s)	444, 818, 850, 864
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	4 cut(s)	233, 286, 373, 850
HpaII	CCGG	4 cut(s)	306, 345, 353, 638
HphI	GGTGA	2 cut(s)	232, 890
Hpy166II	GTNNAC	2 cut(s)	327, 350
Hpy188I	TCNGA	6 cut(s)	130, 232, 313, 333, 502, 657
Hpy188III	TCNNGA	5 cut(s)	177, 623, 749, 779, 847
Hpy8I	GTNNAC	2 cut(s)	327, 350
HpyAV	CCTTC	4 cut(s)	411, 595, 736, 919
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	3 cut(s)	340, 809, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 224, 761
HpyF3I	CTNAG	2 cut(s)	390, 501
HpySE526I	ACGT	1 cut(s)	163
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	4 cut(s)	444, 818, 850, 864
Ksp22I	TGATCA	1 cut(s)	508
LmnI	GCTCC	3 cut(s)	94, 557, 712
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	1 cut(s)	679
MabI	ACCWGGT	1 cut(s)	1021
MaeI	CTAG	1 cut(s)	1049
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	4 cut(s)	220, 640, 878, 1042
MboII	GAAGA	7 cut(s)	111, 114, 494, 709, 712, 751, 1066
MflI	RGATCY	3 cut(s)	173, 333, 745
MluCI	AATT	3 cut(s)	155, 535, 932
MmeI	TCCRAC	2 cut(s)	661, 734
MnlI	CCTC	6 cut(s)	102, 136, 603, 626, 865, 1026
MseI	TTAA	2 cut(s)	522, 935
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	4 cut(s)	306, 345, 353, 638
MspR9I	CCNGG	3 cut(s)	111, 306, 1023
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	111, 1023
MwoI	GCNNNNNNNGC	3 cut(s)	111, 224, 761
NciI	CCSGG	1 cut(s)	306
NcoI	CCATGG	2 cut(s)	440, 860
NlaIII	CATG	4 cut(s)	444, 818, 850, 864
NlaIV	GGNNCC	4 cut(s)	175, 304, 747, 1004
NmuCI	GTSAC	2 cut(s)	220, 878
OliI	CACNNNNGTG	1 cut(s)	218
PagI	TCATGA	1 cut(s)	846
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	4 cut(s)	233, 286, 373, 850
PflFI	GACNNNGTC	2 cut(s)	146, 226
PinAI	ACCGGT	1 cut(s)	637
PkrI	GCNGC	2 cut(s)	170, 562
PmaCI	CACGTG	1 cut(s)	164
PmlI	CACGTG	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	109, 1021
PspCI	CACGTG	1 cut(s)	164
PspGI	CCWGG	2 cut(s)	109, 1021
PspN4I	GGNNCC	4 cut(s)	175, 304, 747, 1004
PspPI	GGNCC	2 cut(s)	302, 635
PsrI	GAACNNNNNNTAC	2 cut(s)	260, 292
PsuI	RGATCY	3 cut(s)	173, 333, 745
PsyI	GACNNNGTC	2 cut(s)	146, 226
RsaI	GTAC	3 cut(s)	269, 453, 887
RsaNI	GTAC	3 cut(s)	268, 452, 886
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	522, 935
SatI	GCNGC	2 cut(s)	169, 561
Sau96I	GGNCC	2 cut(s)	302, 635
ScrFI	CCNGG	3 cut(s)	111, 306, 1023
SetI	ASST	9 cut(s)	166, 295, 403, 529, 562, 606, 876, 1008, 1024
SexAI	ACCWGGT	1 cut(s)	1021
SfaNI	GCATC	1 cut(s)	679
SinI	GGWCC	2 cut(s)	302, 635
SmiMI	CAYNNNNRTG	1 cut(s)	218
SpeI	ACTAGT	1 cut(s)	1048
Sse9I	AATT	3 cut(s)	155, 535, 932
SsiI	CCGC	4 cut(s)	81, 168, 171, 218
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	1 cut(s)	1049
StyD4I	CCNGG	3 cut(s)	109, 304, 1021
StyI	CCWWGG	3 cut(s)	440, 860, 998
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	153, 651
TasI	AATT	3 cut(s)	155, 535, 932
TatI	WGTACW	3 cut(s)	267, 451, 885
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	4 cut(s)	233, 286, 373, 850
Tru1I	TTAA	2 cut(s)	522, 935
Tru9I	TTAA	2 cut(s)	522, 935
TseFI	GTSAC	2 cut(s)	220, 878
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	2 cut(s)	220, 878
TspDTI	ATGAA	5 cut(s)	734, 752, 835, 938, 1080
TspGWI	ACGGA	2 cut(s)	37, 226
Tth111I	GACNNNGTC	2 cut(s)	146, 226
VpaK11BI	GGWCC	2 cut(s)	302, 635
XapI	RAATTY	1 cut(s)	535
XspI	CTAG	1 cut(s)	1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.