FvH4_2g28340

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013842
Physical Location & Seq
Forward (+)
22278696 .. 22282046
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28340.t1

Sequence Viewer

Length: 1098 bp
ATGGGGTGCGGCAACTTCTTCTTCACCATTCTGGTGACCTTCTCCGTAGCTCTGATCACCTACAACATCATCATCTCAGCCAATTCGCCGCTCCAGCAAGACCTCCCCGGCCCGTCGCGCTCGTCGTCGGCGTCCTCTTTTTCCGTGGACCCCGTCATCAAGATGCCGGTGGACCGATCGCGAGGGAAATCGGCGAGCTCCAAGCGACTGTTCCACACGGCGGTGACGGCGTCGGACTCTGTGTACAACACGTGGCAGACTCGGATCATGTACTACTGGTTCAAGAAGTTCCAGAACGAACCGGGCTCGGAAATGGGCGGGTTCACTAGGATCTTGCATTCTGGTAAGCCTGATCAGTATATGGATGAGATCCCTACCTTCGTTGCTCAGCCTTTGCCTGCTGGTATGGATCAGGGATATATAGTTCTCAACAGGCCATGGGCATTTGTACAGTGGCTTCAGCAAGCAAACATCAAAGAAGATTATATACTAATGTCTGAGCCGGATCATATAATCGTCAAGCCCATACCGAACTTGGCAAGAGATGGTCTTGGAAGTGCATTTCCTTTCTTTTACATTGAACCTAAGAAGTATGAGAGGATACTCCGGAAATACTACCCTGAGGACAAGGGACCAGTGACTAACATCGATCCAATTGGAAACTCTCCCGTCATTGTTGGGAAGGAAGCTCTTAAGAAGATTGCACCCACCTGGATGAATGTTTCTTTGGCAATGAAAAAGGATCCTGAAACAGACAAAGCTTTTGGTTGGGTGCTTGAAATGTATGCTTATGCAACAGCATCTGCTCTCCATGGTGTTGGTAATATCTTGTACAAGGACTTCATGCTTCAGCCTCCATGGGATACAGAAATTGGCAAGAAGTTCATAATTCATTACACATATGGATGTGACTACAATATGAAGGGTGAATTAACATATGGAAAGATTGGAGAATGGAGATTTGACAAAAGATCTTACGATCATGTTGCACCACCTAAAAATCTTCCTTTGCCTCCACCTGGTGTCCCAGAAAGTGTGGTGACTCTGGTTAAAATGGTGAATGAAGCTACAGCAAACATTCCAAATTGGGGGTCATAA

Protein Analysis

366

Amino Acids

41.18

Weight (kDa)

8.54

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPAT PF23452 71 - 363 1.1e-127 Hydroxyproline O-arabinosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25265
fragaria_vesca FvH4_2g28340
malus_domestica MD08G1153200.v1.1 MD15G1130300.v1.1
prunus_persica Prupe.1G485800_v2.0.a1
pyrus_communis pycom08g13260 pycom15g11750
rosa_chinensis RchiOBHm_Chr6g0297261
rosa_laevigata RLG00000011616
rosa_multiflora Rmu_sc0004535.1_g000002 Rmu_sc0007115.1_g000001
rosa_roxburghii Rroxscaffold_7G00170700
rosa_rugosa Rorug06G0270100
rosa_samantha Rh6BG389600 Rh6CG394800 Rh6DG381500
rosa_wichuraiana Rw6G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 91
AccII CGCG 2 cut(s) 118, 181
AccIII TCCGGA 1 cut(s) 606
AciI CCGC 4 cut(s) 9, 89, 221, 318
AclWI GGATC 8 cut(s) 272, 338, 364, 417, 513, 644, 737, 750
AcuI CTGAAG 2 cut(s) 443, 833
AcvI CACGTG 1 cut(s) 252
AcyI GRCGYC 2 cut(s) 131, 230
AdeI CACNNNGTG 1 cut(s) 1022
AfaI GTAC 4 cut(s) 245, 272, 450, 833
AfiI CCNNNNNNNGG 3 cut(s) 220, 1019, 1088
AflII CTTAAG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 3 cut(s) 283, 581, 779
AjnI CCWGG 2 cut(s) 710, 1018
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 710, 742
AleI CACNNNNGTG 1 cut(s) 221
AloI GAACNNNNNNTCC 2 cut(s) 408, 440
AluBI AGCT 5 cut(s) 50, 198, 689, 761, 1067
AluI AGCT 5 cut(s) 50, 198, 689, 761, 1067
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 8 cut(s) 272, 338, 364, 417, 513, 644, 737, 750
AlwNI CAGNNNCTG 1 cut(s) 803
Aor13HI TCCGGA 1 cut(s) 606
AoxI GGCC 2 cut(s) 109, 434
ArsI GACNNNNNNTTYG 3 cut(s) 746, 778, 1076
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 4 cut(s) 110, 148, 172, 632
AsuC2I CCSGG 2 cut(s) 108, 303
AsuHPI GGTGA 7 cut(s) 16, 46, 49, 235, 938, 1051, 1069
AvaII GGWCC 3 cut(s) 148, 172, 632
AxyI CCTNAGG 1 cut(s) 621
BamHI GGATCC 1 cut(s) 742
BanII GRGCYC 2 cut(s) 200, 308
BarI GAAGNNNNNNTAC 6 cut(s) 441, 471, 473, 503, 824, 856
BbrPI CACGTG 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 200
BccI CCATC 1 cut(s) 539
BceAI ACGGC 2 cut(s) 234, 243
BcgI CGANNNNNNTGC 2 cut(s) 968, 1002
BciT130I CCWGG 2 cut(s) 712, 1020
BciVI GTATCC 2 cut(s) 594, 856
BclI TGATCA 2 cut(s) 54, 352
BcnI CCSGG 2 cut(s) 108, 303
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 1068
BfrI CTTAAG 1 cut(s) 692
BfuI GTATCC 2 cut(s) 594, 856
BglII AGATCT 1 cut(s) 971
BisI GCNGC 2 cut(s) 10, 89
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 2 cut(s) 11, 90
Bme1390I CCNGG 4 cut(s) 108, 303, 712, 1020
Bme18I GGWCC 3 cut(s) 148, 172, 632
BmgT120I GGNCC 4 cut(s) 110, 148, 172, 632
BmiI GGNNCC 3 cut(s) 150, 633, 744
BmrFI CCNGG 4 cut(s) 108, 303, 712, 1020
BmsI GCATC 2 cut(s) 153, 809
BpmI CTGGAG 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 387
BpuMI CCSGG 2 cut(s) 108, 303
Bsa29I ATCGAT 1 cut(s) 648
BsaAI YACGTR 1 cut(s) 252
BsaHI GRCGYC 2 cut(s) 131, 230
BsaJI CCNNGG 5 cut(s) 106, 144, 437, 811, 857
BsaWI WCCGGW 1 cut(s) 606
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 1019, 1088
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 2 cut(s) 281, 635
Bse21I CCTNAGG 1 cut(s) 621
Bse3DI GCAATG 1 cut(s) 738
BseAI TCCGGA 1 cut(s) 606
BseBI CCWGG 2 cut(s) 712, 1020
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 5 cut(s) 106, 144, 437, 811, 857
BseGI GGATG 3 cut(s) 370, 720, 911
BseLI CCNNNNNNNGG 3 cut(s) 220, 1019, 1088
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 4 cut(s) 90, 401, 489, 612
BseNI ACTGG 2 cut(s) 281, 635
Bsh1236I CGCG 2 cut(s) 118, 181
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 2 cut(s) 111, 436
BshVI ATCGAT 1 cut(s) 648
BsiEI CGRYCG 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 5 cut(s) 108, 167, 302, 503, 607
BslFI GGGAC 2 cut(s) 645, 1010
BslI CCNNNNNNNGG 3 cut(s) 220, 1019, 1088
BsmFI GGGAC 2 cut(s) 645, 1010
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 2 cut(s) 111, 436
Bsp1286I GDGCHC 2 cut(s) 200, 308
Bsp13I TCCGGA 1 cut(s) 606
Bsp1407I TGTACA 3 cut(s) 243, 448, 831
Bsp1720I GCTNAGC 1 cut(s) 387
Bsp19I CCATGG 3 cut(s) 437, 811, 857
Bsp68I TCGCGA 1 cut(s) 181
BspACI CCGC 4 cut(s) 9, 89, 221, 318
BspANI GGCC 2 cut(s) 111, 436
BspCNI CTCAG 4 cut(s) 89, 400, 490, 613
BspDI ATCGAT 1 cut(s) 648
BspEI TCCGGA 1 cut(s) 606
BspFNI CGCG 2 cut(s) 118, 181
BspLI GGNNCC 3 cut(s) 150, 633, 744
BspPI GGATC 8 cut(s) 272, 338, 364, 417, 513, 644, 737, 750
BspTI CTTAAG 1 cut(s) 692
BsrBI CCGCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 738
BsrFI RCCGGY 1 cut(s) 166
BsrGI TGTACA 3 cut(s) 243, 448, 831
BsrI ACTGG 2 cut(s) 281, 635
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 5 cut(s) 106, 144, 437, 811, 857
BssNI GRCGYC 2 cut(s) 131, 230
BssT1I CCWWGG 3 cut(s) 437, 811, 857
Bst2UI CCWGG 2 cut(s) 712, 1020
Bst4CI ACNGT 2 cut(s) 210, 453
BstACI GRCGYC 2 cut(s) 131, 230
BstAFI CTTAAG 1 cut(s) 692
BstAUI TGTACA 3 cut(s) 243, 448, 831
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 3 cut(s) 196, 399, 465
BstDEI CTNAG 5 cut(s) 76, 387, 498, 585, 621
BstDSI CCRYGG 4 cut(s) 144, 437, 811, 857
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 3 cut(s) 370, 720, 911
BstFNI CGCG 2 cut(s) 118, 181
BstHHI GCGC 1 cut(s) 120
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 3 cut(s) 94, 117, 227
BstNI CCWGG 2 cut(s) 712, 1020
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 4 cut(s) 106, 301, 710, 1018
BstSFI CTRYAG 1 cut(s) 1068
BstUI CGCG 2 cut(s) 118, 181
BstX2I RGATCY 4 cut(s) 330, 369, 742, 971
BstXI CCANNNNNNTGG 1 cut(s) 818
BstYI RGATCY 4 cut(s) 330, 369, 742, 971
Bsu15I ATCGAT 1 cut(s) 648
Bsu36I CCTNAGG 1 cut(s) 621
BsuI GTATCC 2 cut(s) 594, 856
BsuRI GGCC 2 cut(s) 111, 436
BsuTUI ATCGAT 1 cut(s) 648
BtgI CCRYGG 4 cut(s) 144, 437, 811, 857
BtsCI GGATG 3 cut(s) 370, 720, 911
BtsIMutI CAGTG 2 cut(s) 458, 642
BtuMI TCGCGA 1 cut(s) 181
Cac8I GCNNGC 3 cut(s) 196, 399, 465
CaiI CAGNNNCTG 1 cut(s) 803
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 4 cut(s) 110, 148, 172, 632
ClaI ATCGAT 1 cut(s) 648
CseI GACGC 2 cut(s) 120, 219
CsiI ACCWGGT 1 cut(s) 1018
Csp6I GTAC 4 cut(s) 244, 271, 449, 832
CviAII CATG 6 cut(s) 268, 438, 812, 844, 858, 983
CviQI GTAC 4 cut(s) 244, 271, 449, 832
DdeI CTNAG 5 cut(s) 76, 387, 498, 585, 621
DraIII CACNNNGTG 1 cut(s) 1022
Ecl136II GAGCTC 1 cut(s) 198
Eco130I CCWWGG 3 cut(s) 437, 811, 857
Eco24I GRGCYC 2 cut(s) 200, 308
Eco47I GGWCC 3 cut(s) 148, 172, 632
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 2 cut(s) 443, 833
Eco72I CACGTG 1 cut(s) 252
Eco81I CCTNAGG 1 cut(s) 621
Eco91I GGTNACC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 198
EcoO65I GGTNACC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 710, 1018
EcoT14I CCWWGG 3 cut(s) 437, 811, 857
EcoT38I GRGCYC 2 cut(s) 200, 308
ErhI CCWWGG 3 cut(s) 437, 811, 857
FaeI CATG 6 cut(s) 271, 441, 815, 847, 861, 986
FaqI GGGAC 2 cut(s) 645, 1010
FatI CATG 6 cut(s) 267, 437, 811, 843, 857, 982
FauI CCCGC 1 cut(s) 311
FauNDI CATATG 2 cut(s) 901, 937
FbaI TGATCA 2 cut(s) 54, 352
Fnu4HI GCNGC 2 cut(s) 10, 89
FokI GGATG 3 cut(s) 377, 727, 918
FriOI GRGCYC 2 cut(s) 200, 308
Fsp4HI GCNGC 2 cut(s) 10, 89
FspBI CTAG 1 cut(s) 327
GlaI GCGC 1 cut(s) 119
GluI GCNGC 2 cut(s) 10, 89
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 2 cut(s) 111, 436
HapII CCGG 5 cut(s) 108, 167, 302, 503, 607
HgaI GACGC 2 cut(s) 120, 219
HhaI GCGC 1 cut(s) 120
Hin1I GRCGYC 2 cut(s) 131, 230
Hin1II CATG 6 cut(s) 271, 441, 815, 847, 861, 986
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 759
HinfI GANTC 3 cut(s) 236, 259, 1042
HpaII CCGG 5 cut(s) 108, 167, 302, 503, 607
HphI GGTGA 7 cut(s) 16, 46, 49, 235, 938, 1051, 1069
Hpy166II GTNNAC 4 cut(s) 148, 172, 244, 324
Hpy188I TCNGA 5 cut(s) 54, 235, 264, 310, 499
Hpy188III TCNNGA 6 cut(s) 160, 180, 283, 292, 607, 746
Hpy8I GTNNAC 4 cut(s) 148, 172, 244, 324
Hpy99I CGWCG 4 cut(s) 118, 127, 130, 235
HpyAV CCTTC 4 cut(s) 49, 388, 676, 916
HpyCH4III ACNGT 2 cut(s) 210, 453
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 5 cut(s) 337, 560, 704, 794, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 117, 227
HpyF3I CTNAG 5 cut(s) 76, 387, 498, 585, 621
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 2 cut(s) 131, 230
Hsp92II CATG 6 cut(s) 271, 441, 815, 847, 861, 986
HspAI GCGC 1 cut(s) 118
Kpn2I TCCGGA 1 cut(s) 606
Ksp22I TGATCA 2 cut(s) 54, 352
LmnI GCTCC 2 cut(s) 96, 203
LweI GCATC 2 cut(s) 153, 809
MabI ACCWGGT 1 cut(s) 1018
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 5 cut(s) 34, 223, 637, 908, 1039
MbiI CCGCTC 1 cut(s) 91
MboII GAAGA 5 cut(s) 10, 13, 491, 709, 995
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 4 cut(s) 330, 369, 742, 971
MhlI GDGCHC 2 cut(s) 200, 308
MluCI AATT 6 cut(s) 82, 654, 870, 888, 929, 1084
MlyI GAGTC 3 cut(s) 230, 253, 1036
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 7 cut(s) 113, 145, 176, 591, 616, 864, 1023
MroI TCCGGA 1 cut(s) 606
MseI TTAA 3 cut(s) 693, 932, 1050
MslI CAYNNNNRTG 5 cut(s) 32, 161, 221, 713, 904
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 5 cut(s) 108, 167, 302, 503, 607
MspR9I CCNGG 4 cut(s) 108, 303, 712, 1020
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 712, 1020
MvnI CGCG 2 cut(s) 118, 181
MwoI GCNNNNNNNGC 3 cut(s) 94, 117, 227
NciI CCSGG 2 cut(s) 108, 303
NcoI CCATGG 3 cut(s) 437, 811, 857
NdeI CATATG 2 cut(s) 901, 937
NlaIII CATG 6 cut(s) 271, 441, 815, 847, 861, 986
NlaIV GGNNCC 3 cut(s) 150, 633, 744
NmuCI GTSAC 5 cut(s) 34, 223, 637, 908, 1039
NruI TCGCGA 1 cut(s) 181
OliI CACNNNNGTG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 2 cut(s) 122, 128
PctI GAATGC 1 cut(s) 337
PflFI GACNNNGTC 2 cut(s) 152, 229
PkrI GCNGC 2 cut(s) 11, 90
Ple19I CGATCG 1 cut(s) 179
PleI GAGTC 3 cut(s) 230, 253, 1036
PmaCI CACGTG 1 cut(s) 252
PmlI CACGTG 1 cut(s) 252
PpsI GAGTC 3 cut(s) 230, 253, 1036
Ppu21I YACGTR 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 200
Psp6I CCWGG 2 cut(s) 710, 1018
PspCI CACGTG 1 cut(s) 252
PspEI GGTNACC 1 cut(s) 34
PspGI CCWGG 2 cut(s) 710, 1018
PspN4I GGNNCC 3 cut(s) 150, 633, 744
PspPI GGNCC 4 cut(s) 110, 148, 172, 632
PsrI GAACNNNNNNTAC 2 cut(s) 263, 295
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 4 cut(s) 330, 369, 742, 971
PsyI GACNNNGTC 2 cut(s) 152, 229
PvuI CGATCG 1 cut(s) 179
RruI TCGCGA 1 cut(s) 181
RsaI GTAC 4 cut(s) 245, 272, 450, 833
RsaNI GTAC 4 cut(s) 244, 271, 449, 832
RseI CAYNNNNRTG 5 cut(s) 32, 161, 221, 713, 904
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 3 cut(s) 693, 932, 1050
SatI GCNGC 2 cut(s) 10, 89
Sau96I GGNCC 4 cut(s) 110, 148, 172, 632
SchI GAGTC 3 cut(s) 230, 253, 1036
ScrFI CCNGG 4 cut(s) 108, 303, 712, 1020
SduI GDGCHC 2 cut(s) 200, 308
SexAI ACCWGGT 1 cut(s) 1018
SfaNI GCATC 2 cut(s) 153, 809
SfcI CTRYAG 1 cut(s) 1068
SinI GGWCC 3 cut(s) 148, 172, 632
SmiMI CAYNNNNRTG 5 cut(s) 32, 161, 221, 713, 904
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 6 cut(s) 82, 654, 870, 888, 929, 1084
SsiI CCGC 4 cut(s) 9, 89, 221, 318
SspMI CTAG 1 cut(s) 327
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 4 cut(s) 106, 301, 710, 1018
StyI CCWWGG 3 cut(s) 437, 811, 857
TaaI ACNGT 2 cut(s) 210, 453
TaiI ACGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 648
TaqII GACCGA 1 cut(s) 189
TasI AATT 6 cut(s) 82, 654, 870, 888, 929, 1084
TatI WGTACW 4 cut(s) 243, 270, 448, 831
TauI GCSGC 2 cut(s) 12, 91
Tru1I TTAA 3 cut(s) 693, 932, 1050
Tru9I TTAA 3 cut(s) 693, 932, 1050
TscAI CASTG 2 cut(s) 458, 642
TseFI GTSAC 5 cut(s) 34, 223, 637, 908, 1039
Tsp45I GTSAC 5 cut(s) 34, 223, 637, 908, 1039
TspDTI ATGAA 7 cut(s) 731, 749, 832, 874, 881, 935, 1077
TspGWI ACGGA 2 cut(s) 34, 133
TspRI CASTG 2 cut(s) 458, 642
Tth111I GACNNNGTC 2 cut(s) 152, 229
Vha464I CTTAAG 1 cut(s) 692
VpaK11BI GGWCC 3 cut(s) 148, 172, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.