Rw6G033240

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013842
Physical Location & Seq
Forward (+)
57728101 .. 57747654
19554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033240.1

Sequence Viewer

Length: 1098 bp
ATGGGCTGCGGGAACTTCTTCTTCACCATTCTGGTGACCTTCTCCGTAGCTCTAATCACATACAACATAATCATCTCGGCCAATTCTCCGCTCCAGCAAGACCTCCCCGGCCCCTCACGGTCGTCGTCTTCTTCCTCGATTTCCGTGGACCCCATCATCAAGATGCCGACGGACCGCTCGCGAGGGAAATCGGCCAACTCCAAGCGACTGTTCCACACGGCGGTTACGGCCTCGGATTCTGTGTACAACACGTGGCAGACTCGGATCATGTACTACTGGTTCAAGAAGTTTCAGAACGAACCGGGTTCGGAAATGGGCGGGTTCACTAGGATCTTGCATTCCGGTAAGCCTGATAAGTATATGGATGAGATCCCTACCTTCGTTGCTCAGCCTTTGCCTGCTGGAATGGATCGGGGATATATAGTTCTCAATAGGCCATGGGCATTTGTACAATGGCTTCAGCAAGCGAACATCAAAGAAGATTATATACTGATGTCTGAGCCAGATCATATAATCGTCAAACCCATACCGAACTTGGCAAGAGATGGGCTTGGAAGTGCATTTCCTTTCTTTTACATTGAACCTAAGAAGTATGAGACAATACTCCGGAAATACTACCCTGAGGACAAGGGACCAATAACTAACATTGATCCAATTGGAAACTCTCCCGTCATTGTTGGGAAGGAAGCTCTTAAGAAGATTGCCCCCACCTGGATGAATGTTTCTTTGGCAATGAAAAAGGATCCTGAAACAGACAAATCTTTTGGCTGGGTGCTTGAAATGTATGCTTATGCAACGGCATCCGCTCTTCATGGTGTTGGTAATATCTTGTACAAGGACTTCATGCTTCAGCCTCCATGGGATACAGAAATTGGCAAGAAGTTCATAATTCATTACACTTATGGATGTGACTATAACATGAAGGGTGAATTAACGTATGGAAAGATTGGAGAATGGAGATTTGACAAAAGATCTTACGATAATGTTGCACCACCTAAAAATCTTCCTTTACCTCCACCTGGTGTCCCAGAAAGTGTGGTGACTCTGGTTAAAATGGTGAATGAAGCCACAGCAAACATTCCAAATTGGGGGTCATAA

Protein Analysis

365

Amino Acids

41.18

Weight (kDa)

8.73

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPAT PF23452 71 - 363 5.4e-127 Hydroxyproline O-arabinosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25265
fragaria_vesca FvH4_2g28340
malus_domestica MD08G1153200.v1.1 MD15G1130300.v1.1
prunus_persica Prupe.1G485800_v2.0.a1
pyrus_communis pycom08g13260 pycom15g11750
rosa_chinensis RchiOBHm_Chr6g0297261
rosa_laevigata RLG00000011616
rosa_multiflora Rmu_sc0004535.1_g000002 Rmu_sc0007115.1_g000001
rosa_roxburghii Rroxscaffold_7G00170700
rosa_rugosa Rorug06G0270100
rosa_samantha Rh6BG389600 Rh6CG394800 Rh6DG381500
rosa_wichuraiana Rw6G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 91, 177, 806
AccII CGCG 1 cut(s) 181
AccIII TCCGGA 1 cut(s) 606
AciI CCGC 6 cut(s) 9, 89, 175, 221, 318, 804
AclWI GGATC 7 cut(s) 272, 338, 364, 417, 644, 737, 750
AcoI YGGCCR 2 cut(s) 78, 192
AcuI CTGAAG 2 cut(s) 443, 833
AcvI CACGTG 1 cut(s) 252
AdeI CACNNNGTG 1 cut(s) 1022
AfaI GTAC 4 cut(s) 245, 272, 450, 833
AfiI CCNNNNNNNGG 4 cut(s) 220, 711, 1019, 1088
AflII CTTAAG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 3 cut(s) 283, 581, 779
AjnI CCWGG 2 cut(s) 710, 1018
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 710, 742
AloI GAACNNNNNNTCC 2 cut(s) 408, 440
AluBI AGCT 2 cut(s) 50, 689
AluI AGCT 2 cut(s) 50, 689
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 7 cut(s) 272, 338, 364, 417, 644, 737, 750
Aor13HI TCCGGA 1 cut(s) 606
AoxI GGCC 5 cut(s) 78, 109, 192, 228, 434
ApeKI GCWGC 1 cut(s) 6
ArsI GACNNNNNNTTYG 3 cut(s) 746, 778, 1076
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 4 cut(s) 110, 148, 172, 632
AsuC2I CCSGG 2 cut(s) 108, 303
AsuHPI GGTGA 5 cut(s) 16, 46, 938, 1051, 1069
AvaII GGWCC 3 cut(s) 148, 172, 632
AxyI CCTNAGG 1 cut(s) 621
BamHI GGATCC 1 cut(s) 742
BarI GAAGNNNNNNTAC 6 cut(s) 441, 471, 473, 503, 824, 856
BbrPI CACGTG 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 120
BccI CCATC 2 cut(s) 161, 539
BceAI ACGGC 3 cut(s) 234, 243, 813
BcgI CGANNNNNNTGC 2 cut(s) 968, 1002
BciT130I CCWGG 2 cut(s) 712, 1020
BciVI GTATCC 1 cut(s) 856
BcnI CCSGG 2 cut(s) 108, 303
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 1 cut(s) 327
BfrI CTTAAG 1 cut(s) 692
BfuI GTATCC 1 cut(s) 856
BglII AGATCT 1 cut(s) 971
BisI GCNGC 1 cut(s) 7
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 8
Bme1390I CCNGG 4 cut(s) 108, 303, 712, 1020
Bme18I GGWCC 3 cut(s) 148, 172, 632
BmgT120I GGNCC 4 cut(s) 110, 148, 172, 632
BmiI GGNNCC 4 cut(s) 112, 150, 633, 744
BmrFI CCNGG 4 cut(s) 108, 303, 712, 1020
BmsI GCATC 2 cut(s) 153, 809
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 387
BpuMI CCSGG 2 cut(s) 108, 303
BsaAI YACGTR 1 cut(s) 252
BsaJI CCNNGG 5 cut(s) 106, 144, 231, 437, 857
BsaWI WCCGGW 2 cut(s) 341, 606
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 711, 1019, 1088
Bse1I ACTGG 1 cut(s) 281
Bse21I CCTNAGG 1 cut(s) 621
Bse3DI GCAATG 1 cut(s) 738
BseAI TCCGGA 1 cut(s) 606
BseBI CCWGG 2 cut(s) 712, 1020
BseDI CCNNGG 5 cut(s) 106, 144, 231, 437, 857
BseGI GGATG 4 cut(s) 370, 720, 800, 911
BseLI CCNNNNNNNGG 4 cut(s) 220, 711, 1019, 1088
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 3 cut(s) 401, 489, 612
BseNI ACTGG 1 cut(s) 281
BseYI CCCAGC 1 cut(s) 768
Bsh1236I CGCG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 5 cut(s) 80, 111, 194, 230, 436
BsiEI CGRYCG 1 cut(s) 122
BsiSI CCGG 4 cut(s) 108, 302, 342, 607
BslFI GGGAC 2 cut(s) 645, 1010
BslI CCNNNNNNNGG 4 cut(s) 220, 711, 1019, 1088
BsmAI GTCTC 1 cut(s) 590
BsmFI GGGAC 2 cut(s) 645, 1010
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 5 cut(s) 80, 111, 194, 230, 436
Bsp13I TCCGGA 1 cut(s) 606
Bsp1407I TGTACA 3 cut(s) 243, 448, 831
Bsp143I GATC 8 cut(s) 264, 330, 369, 409, 505, 649, 742, 971
Bsp1720I GCTNAGC 1 cut(s) 387
Bsp19I CCATGG 2 cut(s) 437, 857
Bsp68I TCGCGA 1 cut(s) 181
BspACI CCGC 6 cut(s) 9, 89, 175, 221, 318, 804
BspANI GGCC 5 cut(s) 80, 111, 194, 230, 436
BspCNI CTCAG 3 cut(s) 400, 490, 613
BspEI TCCGGA 1 cut(s) 606
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 4 cut(s) 112, 150, 633, 744
BspPI GGATC 7 cut(s) 272, 338, 364, 417, 644, 737, 750
BspQI GCTCTTC 1 cut(s) 813
BspTI CTTAAG 1 cut(s) 692
BsrBI CCGCTC 3 cut(s) 91, 177, 806
BsrDI GCAATG 1 cut(s) 738
BsrGI TGTACA 3 cut(s) 243, 448, 831
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 5 cut(s) 106, 144, 231, 437, 857
BssMI GATC 8 cut(s) 264, 330, 369, 409, 505, 649, 742, 971
BssT1I CCWWGG 2 cut(s) 437, 857
Bst2UI CCWGG 2 cut(s) 712, 1020
Bst4CI ACNGT 2 cut(s) 120, 210
Bst6I CTCTTC 1 cut(s) 813
BstAFI CTTAAG 1 cut(s) 692
BstAUI TGTACA 3 cut(s) 243, 448, 831
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 3 cut(s) 179, 399, 465
BstDEI CTNAG 4 cut(s) 387, 498, 585, 621
BstDSI CCRYGG 3 cut(s) 144, 437, 857
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 4 cut(s) 370, 720, 800, 911
BstFNI CGCG 1 cut(s) 181
BstKTI GATC 8 cut(s) 267, 333, 372, 412, 508, 652, 745, 974
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 8 cut(s) 264, 330, 369, 409, 505, 649, 742, 971
BstMCI CGRYCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 2 cut(s) 712, 1020
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 4 cut(s) 106, 301, 710, 1018
BstUI CGCG 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 4 cut(s) 330, 369, 742, 971
BstYI RGATCY 4 cut(s) 330, 369, 742, 971
Bsu36I CCTNAGG 1 cut(s) 621
BsuI GTATCC 1 cut(s) 856
BsuRI GGCC 5 cut(s) 80, 111, 194, 230, 436
BtgI CCRYGG 3 cut(s) 144, 437, 857
BtsCI GGATG 4 cut(s) 370, 720, 800, 911
BtuMI TCGCGA 1 cut(s) 181
Cac8I GCNNGC 3 cut(s) 179, 399, 465
Cfr13I GGNCC 4 cut(s) 110, 148, 172, 632
CpoI CGGWCCG 1 cut(s) 172
CsiI ACCWGGT 1 cut(s) 1018
Csp6I GTAC 4 cut(s) 244, 271, 449, 832
CspI CGGWCCG 1 cut(s) 172
CviAII CATG 6 cut(s) 268, 438, 812, 844, 858, 919
CviQI GTAC 4 cut(s) 244, 271, 449, 832
DdeI CTNAG 4 cut(s) 387, 498, 585, 621
DpnI GATC 8 cut(s) 266, 332, 371, 411, 507, 651, 744, 973
DpnII GATC 8 cut(s) 264, 330, 369, 409, 505, 649, 742, 971
DraIII CACNNNGTG 1 cut(s) 1022
EaeI YGGCCR 2 cut(s) 78, 192
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
Eco130I CCWWGG 2 cut(s) 437, 857
Eco47I GGWCC 3 cut(s) 148, 172, 632
Eco57I CTGAAG 2 cut(s) 443, 833
Eco72I CACGTG 1 cut(s) 252
Eco81I CCTNAGG 1 cut(s) 621
Eco91I GGTNACC 1 cut(s) 34
EcoO65I GGTNACC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 710, 1018
EcoT14I CCWWGG 2 cut(s) 437, 857
ErhI CCWWGG 2 cut(s) 437, 857
FaeI CATG 6 cut(s) 271, 441, 815, 847, 861, 922
FaqI GGGAC 2 cut(s) 645, 1010
FatI CATG 6 cut(s) 267, 437, 811, 843, 857, 918
FauI CCCGC 2 cut(s) 2, 311
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 4 cut(s) 377, 727, 787, 918
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 1 cut(s) 327
GluI GCNGC 1 cut(s) 7
GsaI CCCAGC 1 cut(s) 772
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 5 cut(s) 80, 111, 194, 230, 436
HapII CCGG 4 cut(s) 108, 302, 342, 607
Hin1II CATG 6 cut(s) 271, 441, 815, 847, 861, 922
HinfI GANTC 3 cut(s) 236, 259, 1042
HpaII CCGG 4 cut(s) 108, 302, 342, 607
HphI GGTGA 5 cut(s) 16, 46, 938, 1051, 1069
Hpy166II GTNNAC 3 cut(s) 148, 244, 324
Hpy188I TCNGA 5 cut(s) 235, 264, 294, 310, 499
Hpy188III TCNNGA 5 cut(s) 160, 180, 283, 607, 746
Hpy8I GTNNAC 3 cut(s) 148, 244, 324
Hpy99I CGWCG 2 cut(s) 127, 172
HpyAV CCTTC 4 cut(s) 49, 388, 676, 916
HpyCH4III ACNGT 2 cut(s) 120, 210
HpyCH4IV ACGT 2 cut(s) 251, 935
HpyCH4V TGCA 4 cut(s) 337, 560, 794, 989
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 4 cut(s) 387, 498, 585, 621
HpySE526I ACGT 2 cut(s) 251, 935
Hsp92II CATG 6 cut(s) 271, 441, 815, 847, 861, 922
Kpn2I TCCGGA 1 cut(s) 606
Kzo9I GATC 8 cut(s) 264, 330, 369, 409, 505, 649, 742, 971
LguI GCTCTTC 1 cut(s) 813
LmnI GCTCC 1 cut(s) 96
LweI GCATC 2 cut(s) 153, 809
MabI ACCWGGT 1 cut(s) 1018
MaeI CTAG 1 cut(s) 327
MaeII ACGT 2 cut(s) 251, 935
MaeIII GTNAC 4 cut(s) 34, 223, 908, 1039
MalI GATC 8 cut(s) 266, 332, 371, 411, 507, 651, 744, 973
MbiI CCGCTC 3 cut(s) 91, 177, 806
MboI GATC 8 cut(s) 264, 330, 369, 409, 505, 649, 742, 971
MboII GAAGA 8 cut(s) 10, 13, 120, 123, 491, 709, 800, 995
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 4 cut(s) 330, 369, 742, 971
MluCI AATT 6 cut(s) 82, 654, 870, 888, 929, 1084
MlyI GAGTC 2 cut(s) 253, 1036
MnlI CCTC 8 cut(s) 113, 124, 145, 176, 241, 616, 864, 1023
MroI TCCGGA 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 3 cut(s) 693, 932, 1050
MslI CAYNNNNRTG 3 cut(s) 32, 161, 713
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 4 cut(s) 108, 302, 342, 607
MspR9I CCNGG 4 cut(s) 108, 303, 712, 1020
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 712, 1020
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 227
NciI CCSGG 2 cut(s) 108, 303
NcoI CCATGG 2 cut(s) 437, 857
NdeII GATC 8 cut(s) 264, 330, 369, 409, 505, 649, 742, 971
NlaIII CATG 6 cut(s) 271, 441, 815, 847, 861, 922
NlaIV GGNNCC 4 cut(s) 112, 150, 633, 744
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 3 cut(s) 34, 908, 1039
NruI TCGCGA 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 813
PctI GAATGC 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 8
PleI GAGTC 2 cut(s) 253, 1036
PmaCI CACGTG 1 cut(s) 252
PmlI CACGTG 1 cut(s) 252
PpsI GAGTC 2 cut(s) 253, 1036
Ppu21I YACGTR 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 710, 1018
PspCI CACGTG 1 cut(s) 252
PspEI GGTNACC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 768
PspGI CCWGG 2 cut(s) 710, 1018
PspN4I GGNNCC 4 cut(s) 112, 150, 633, 744
PspPI GGNCC 4 cut(s) 110, 148, 172, 632
PsrI GAACNNNNNNTAC 2 cut(s) 263, 295
PsuI RGATCY 4 cut(s) 330, 369, 742, 971
RruI TCGCGA 1 cut(s) 181
RsaI GTAC 4 cut(s) 245, 272, 450, 833
RsaNI GTAC 4 cut(s) 244, 271, 449, 832
RseI CAYNNNNRTG 3 cut(s) 32, 161, 713
Rsr2I CGGWCCG 1 cut(s) 172
RsrII CGGWCCG 1 cut(s) 172
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 3 cut(s) 693, 932, 1050
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 8 cut(s) 264, 330, 369, 409, 505, 649, 742, 971
Sau96I GGNCC 4 cut(s) 110, 148, 172, 632
SchI GAGTC 2 cut(s) 253, 1036
ScrFI CCNGG 4 cut(s) 108, 303, 712, 1020
SexAI ACCWGGT 1 cut(s) 1018
SfaNI GCATC 2 cut(s) 153, 809
SinI GGWCC 3 cut(s) 148, 172, 632
SmiMI CAYNNNNRTG 3 cut(s) 32, 161, 713
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 6 cut(s) 82, 654, 870, 888, 929, 1084
SsiI CCGC 6 cut(s) 9, 89, 175, 221, 318, 804
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 4 cut(s) 106, 301, 710, 1018
StyI CCWWGG 2 cut(s) 437, 857
TaaI ACNGT 2 cut(s) 120, 210
TaiI ACGT 2 cut(s) 254, 938
TaqI TCGA 1 cut(s) 137
TasI AATT 6 cut(s) 82, 654, 870, 888, 929, 1084
TatI WGTACW 4 cut(s) 243, 270, 448, 831
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 693, 932, 1050
Tru9I TTAA 3 cut(s) 693, 932, 1050
TseFI GTSAC 3 cut(s) 34, 908, 1039
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 3 cut(s) 34, 908, 1039
TspDTI ATGAA 8 cut(s) 731, 749, 800, 832, 874, 881, 935, 1077
TspGWI ACGGA 3 cut(s) 34, 133, 185
Vha464I CTTAAG 1 cut(s) 692
VpaK11BI GGWCC 3 cut(s) 148, 172, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.