RLG00000011616

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013842
Physical Location & Seq
Reverse (-)
11028974 .. 11032083
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011616

Sequence Viewer

Length: 1098 bp
ATGGGCTGCGGGAACTTCTTCTTCACCATTCTGGTGACCTTCTCCGTAGCTCTAATCACATACAACATAATCATCTCAGCCAATTCTCCACTCCAGCAAGACCTCCCCGGCCCCTCACGGTCGTCGTCTTCTTCCTCGATTTCCGTGGACCCCATCATCAAGATGCCGACGGACCGATCGGGACGGAAATCGGCGAACTCCAAGCGACTGTTCCACACGGCGGTTACGGCGTCCGATTCTGTGTACAACACGTGGCAGACTCGGATCATGTACTACTGGTTCAAGAAGTTTCAGAACGAGCCGGGTTCGGAAATGGGCGGGTTCACTAGGATCTTACATTCCGGTAAGCCTGATAAGTATATGGATGAGATCCCTACCTTCGTTGCTCAGCCTTTGCCTGCTGGAATGGATCGGGGATATATAGTTCTCAATAGGCCATGGGCATTTGTACAGTGGCTTCAGCAAGCGAACATCAAAGAAGATTATATACTGATGTCTGAGCCAGATCATATAATCGTCAAGCCCATACCGAACTTGGCAAGAGATGGGCTTGGAAGTGCATTTCCTTTCTTTTACATTGAACCTAAGAAGTACGAGACAATACTCCGGAAATACTTCCCTGAGGACAAGGGACCAATAACTAACATTGATCCAATTGGAAACTCTCCCGTCATTGTTGGGAAGGAAGCTCTTAAGAAGATTGCCCCCACCTGGATGAATGTTTCTTTGGCAATGAAAAAGGATCCTGAAACAGACAAAGCTTTTGGCTGGGTGCTTGAAATGTATGCTTATGCAACAGCATCCGCTCTTCATGGTGTCGGTAATATCTTGTACAAGGACTTCATGCTTCAGCCTCCATGGGATACAGAGATTGGCAAGAAGTTCATAATTCATTACACTTATGGATGTGACTATAATATGAAGGGTGAATTAACGTATGGAAAGATTGGAGAGTGGAGATTTGACAAAAGATCTTACGATAATGTGGCACCACCTAAAAATCTTCCTTTACCTCCACCTGGTGTCCCAGAAAGTGTGGTGACTCTGGTTAAAATGGTGAATGAAGCCACAGCAAACATTCCAAATTGGGGGTCATAA

Protein Analysis

366

Amino Acids

41.15

Weight (kDa)

8.73

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPAT PF23452 71 - 363 3.4e-127 Hydroxyproline O-arabinosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25265
fragaria_vesca FvH4_2g28340
malus_domestica MD08G1153200.v1.1 MD15G1130300.v1.1
prunus_persica Prupe.1G485800_v2.0.a1
pyrus_communis pycom08g13260 pycom15g11750
rosa_chinensis RchiOBHm_Chr6g0297261
rosa_laevigata RLG00000011616
rosa_multiflora Rmu_sc0004535.1_g000002 Rmu_sc0007115.1_g000001
rosa_roxburghii Rroxscaffold_7G00170700
rosa_rugosa Rorug06G0270100
rosa_samantha Rh6BG389600 Rh6CG394800 Rh6DG381500
rosa_wichuraiana Rw6G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 988
AccBSI CCGCTC 1 cut(s) 806
AccIII TCCGGA 1 cut(s) 606
AciI CCGC 4 cut(s) 9, 221, 318, 804
AclWI GGATC 7 cut(s) 272, 338, 364, 417, 644, 737, 750
AcuI CTGAAG 2 cut(s) 443, 833
AcvI CACGTG 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 1022
AfaI GTAC 5 cut(s) 245, 272, 450, 593, 833
AfiI CCNNNNNNNGG 4 cut(s) 220, 711, 1019, 1088
AflII CTTAAG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 3 cut(s) 283, 581, 779
AjnI CCWGG 2 cut(s) 710, 1018
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 710, 742
AloI GAACNNNNNNTCC 2 cut(s) 408, 440
AluBI AGCT 3 cut(s) 50, 689, 761
AluI AGCT 3 cut(s) 50, 689, 761
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 7 cut(s) 272, 338, 364, 417, 644, 737, 750
Aor13HI TCCGGA 1 cut(s) 606
AoxI GGCC 2 cut(s) 109, 434
ApeKI GCWGC 1 cut(s) 6
ArsI GACNNNNNNTTYG 3 cut(s) 746, 778, 1076
Asp700I GAANNNNTTC 2 cut(s) 17, 614
AspS9I GGNCC 4 cut(s) 110, 148, 172, 632
AsuC2I CCSGG 2 cut(s) 108, 303
AsuHPI GGTGA 5 cut(s) 16, 46, 938, 1051, 1069
AvaII GGWCC 3 cut(s) 148, 172, 632
AxyI CCTNAGG 1 cut(s) 621
BamHI GGATCC 1 cut(s) 742
BanI GGYRCC 1 cut(s) 988
BarI GAAGNNNNNNTAC 6 cut(s) 441, 471, 473, 503, 824, 856
BbrPI CACGTG 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 120
BccI CCATC 2 cut(s) 161, 539
BceAI ACGGC 2 cut(s) 234, 243
BciT130I CCWGG 2 cut(s) 712, 1020
BciVI GTATCC 1 cut(s) 856
BcnI CCSGG 2 cut(s) 108, 303
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 1 cut(s) 327
BfrI CTTAAG 1 cut(s) 692
BfuI GTATCC 1 cut(s) 856
BglII AGATCT 1 cut(s) 971
BisI GCNGC 1 cut(s) 7
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 8
Bme1390I CCNGG 4 cut(s) 108, 303, 712, 1020
Bme18I GGWCC 3 cut(s) 148, 172, 632
BmgT120I GGNCC 4 cut(s) 110, 148, 172, 632
BmiI GGNNCC 5 cut(s) 112, 150, 633, 744, 990
BmrFI CCNGG 4 cut(s) 108, 303, 712, 1020
BmsI GCATC 2 cut(s) 153, 809
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 387
BpuMI CCSGG 2 cut(s) 108, 303
BsaAI YACGTR 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 4 cut(s) 106, 144, 437, 857
BsaWI WCCGGW 2 cut(s) 341, 606
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 711, 1019, 1088
Bse1I ACTGG 1 cut(s) 281
Bse21I CCTNAGG 1 cut(s) 621
Bse3DI GCAATG 1 cut(s) 738
BseAI TCCGGA 1 cut(s) 606
BseBI CCWGG 2 cut(s) 712, 1020
BseDI CCNNGG 4 cut(s) 106, 144, 437, 857
BseGI GGATG 4 cut(s) 370, 720, 800, 911
BseLI CCNNNNNNNGG 4 cut(s) 220, 711, 1019, 1088
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 4 cut(s) 90, 401, 489, 612
BseNI ACTGG 1 cut(s) 281
BseYI CCCAGC 1 cut(s) 768
Bsh1285I CGRYCG 2 cut(s) 122, 179
BshFI GGCC 2 cut(s) 111, 436
BshNI GGYRCC 1 cut(s) 988
BsiEI CGRYCG 2 cut(s) 122, 179
BsiSI CCGG 4 cut(s) 108, 302, 342, 607
BslFI GGGAC 3 cut(s) 195, 645, 1010
BslI CCNNNNNNNGG 4 cut(s) 220, 711, 1019, 1088
BsmAI GTCTC 1 cut(s) 590
BsmFI GGGAC 3 cut(s) 195, 645, 1010
BsnI GGCC 2 cut(s) 111, 436
Bsp13I TCCGGA 1 cut(s) 606
Bsp1407I TGTACA 3 cut(s) 243, 448, 831
Bsp143I GATC 9 cut(s) 176, 264, 330, 369, 409, 505, 649, 742, 971
Bsp1720I GCTNAGC 1 cut(s) 387
Bsp19I CCATGG 2 cut(s) 437, 857
BspACI CCGC 4 cut(s) 9, 221, 318, 804
BspANI GGCC 2 cut(s) 111, 436
BspCNI CTCAG 4 cut(s) 89, 400, 490, 613
BspEI TCCGGA 1 cut(s) 606
BspLI GGNNCC 5 cut(s) 112, 150, 633, 744, 990
BspPI GGATC 7 cut(s) 272, 338, 364, 417, 644, 737, 750
BspQI GCTCTTC 1 cut(s) 813
BspT107I GGYRCC 1 cut(s) 988
BspTI CTTAAG 1 cut(s) 692
BsrBI CCGCTC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 738
BsrGI TGTACA 3 cut(s) 243, 448, 831
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 4 cut(s) 106, 144, 437, 857
BssMI GATC 9 cut(s) 176, 264, 330, 369, 409, 505, 649, 742, 971
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 2 cut(s) 437, 857
Bst2UI CCWGG 2 cut(s) 712, 1020
Bst4CI ACNGT 3 cut(s) 120, 210, 453
Bst6I CTCTTC 1 cut(s) 813
BstACI GRCGYC 1 cut(s) 230
BstAFI CTTAAG 1 cut(s) 692
BstAUI TGTACA 3 cut(s) 243, 448, 831
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 399, 465
BstDEI CTNAG 5 cut(s) 76, 387, 498, 585, 621
BstDSI CCRYGG 3 cut(s) 144, 437, 857
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 4 cut(s) 370, 720, 800, 911
BstKTI GATC 9 cut(s) 179, 267, 333, 372, 412, 508, 652, 745, 974
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 9 cut(s) 176, 264, 330, 369, 409, 505, 649, 742, 971
BstMCI CGRYCG 2 cut(s) 122, 179
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 2 cut(s) 712, 1020
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 4 cut(s) 106, 301, 710, 1018
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 4 cut(s) 330, 369, 742, 971
BstYI RGATCY 4 cut(s) 330, 369, 742, 971
Bsu36I CCTNAGG 1 cut(s) 621
BsuI GTATCC 1 cut(s) 856
BsuRI GGCC 2 cut(s) 111, 436
BtgI CCRYGG 3 cut(s) 144, 437, 857
BtsCI GGATG 4 cut(s) 370, 720, 800, 911
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 399, 465
Cfr13I GGNCC 4 cut(s) 110, 148, 172, 632
CpoI CGGWCCG 1 cut(s) 172
CseI GACGC 1 cut(s) 219
CsiI ACCWGGT 1 cut(s) 1018
Csp6I GTAC 5 cut(s) 244, 271, 449, 592, 832
CspI CGGWCCG 1 cut(s) 172
CviAII CATG 5 cut(s) 268, 438, 812, 844, 858
CviQI GTAC 5 cut(s) 244, 271, 449, 592, 832
DdeI CTNAG 5 cut(s) 76, 387, 498, 585, 621
DpnI GATC 9 cut(s) 178, 266, 332, 371, 411, 507, 651, 744, 973
DpnII GATC 9 cut(s) 176, 264, 330, 369, 409, 505, 649, 742, 971
DraIII CACNNNGTG 1 cut(s) 1022
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
Eco130I CCWWGG 2 cut(s) 437, 857
Eco47I GGWCC 3 cut(s) 148, 172, 632
Eco57I CTGAAG 2 cut(s) 443, 833
Eco72I CACGTG 1 cut(s) 252
Eco81I CCTNAGG 1 cut(s) 621
Eco91I GGTNACC 1 cut(s) 34
EcoO65I GGTNACC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 710, 1018
EcoT14I CCWWGG 2 cut(s) 437, 857
ErhI CCWWGG 2 cut(s) 437, 857
FaeI CATG 5 cut(s) 271, 441, 815, 847, 861
FaqI GGGAC 3 cut(s) 195, 645, 1010
FatI CATG 5 cut(s) 267, 437, 811, 843, 857
FauI CCCGC 2 cut(s) 2, 311
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 4 cut(s) 377, 727, 787, 918
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 1 cut(s) 327
GluI GCNGC 1 cut(s) 7
GsaI CCCAGC 1 cut(s) 772
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 2 cut(s) 111, 436
HapII CCGG 4 cut(s) 108, 302, 342, 607
HgaI GACGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 5 cut(s) 271, 441, 815, 847, 861
HindIII AAGCTT 1 cut(s) 759
HinfI GANTC 3 cut(s) 236, 259, 1042
HpaII CCGG 4 cut(s) 108, 302, 342, 607
HphI GGTGA 5 cut(s) 16, 46, 938, 1051, 1069
Hpy166II GTNNAC 3 cut(s) 148, 244, 324
Hpy188I TCNGA 5 cut(s) 235, 264, 294, 310, 499
Hpy188III TCNNGA 5 cut(s) 160, 180, 283, 607, 746
Hpy8I GTNNAC 3 cut(s) 148, 244, 324
Hpy99I CGWCG 2 cut(s) 127, 172
HpyAV CCTTC 4 cut(s) 49, 388, 676, 916
HpyCH4III ACNGT 3 cut(s) 120, 210, 453
HpyCH4IV ACGT 2 cut(s) 251, 935
HpyCH4V TGCA 2 cut(s) 560, 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 5 cut(s) 76, 387, 498, 585, 621
HpySE526I ACGT 2 cut(s) 251, 935
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 5 cut(s) 271, 441, 815, 847, 861
Kpn2I TCCGGA 1 cut(s) 606
Kzo9I GATC 9 cut(s) 176, 264, 330, 369, 409, 505, 649, 742, 971
LguI GCTCTTC 1 cut(s) 813
LweI GCATC 2 cut(s) 153, 809
MabI ACCWGGT 1 cut(s) 1018
MaeI CTAG 1 cut(s) 327
MaeII ACGT 2 cut(s) 251, 935
MaeIII GTNAC 4 cut(s) 34, 223, 908, 1039
MalI GATC 9 cut(s) 178, 266, 332, 371, 411, 507, 651, 744, 973
MbiI CCGCTC 1 cut(s) 806
MboI GATC 9 cut(s) 176, 264, 330, 369, 409, 505, 649, 742, 971
MboII GAAGA 8 cut(s) 10, 13, 120, 123, 491, 709, 800, 995
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 4 cut(s) 330, 369, 742, 971
MluCI AATT 5 cut(s) 82, 654, 888, 929, 1084
MlyI GAGTC 2 cut(s) 253, 1036
MnlI CCTC 6 cut(s) 113, 124, 145, 616, 864, 1023
MroI TCCGGA 1 cut(s) 606
MroXI GAANNNNTTC 2 cut(s) 17, 614
MseI TTAA 3 cut(s) 693, 932, 1050
MslI CAYNNNNRTG 3 cut(s) 32, 161, 713
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 4 cut(s) 108, 302, 342, 607
MspR9I CCNGG 4 cut(s) 108, 303, 712, 1020
MunI CAATTG 1 cut(s) 654
MvaI CCWGG 2 cut(s) 712, 1020
MwoI GCNNNNNNNGC 1 cut(s) 227
NciI CCSGG 2 cut(s) 108, 303
NcoI CCATGG 2 cut(s) 437, 857
NdeII GATC 9 cut(s) 176, 264, 330, 369, 409, 505, 649, 742, 971
NlaIII CATG 5 cut(s) 271, 441, 815, 847, 861
NlaIV GGNNCC 5 cut(s) 112, 150, 633, 744, 990
NmuCI GTSAC 3 cut(s) 34, 908, 1039
PciSI GCTCTTC 1 cut(s) 813
PdmI GAANNNNTTC 2 cut(s) 17, 614
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 8
Ple19I CGATCG 1 cut(s) 179
PleI GAGTC 2 cut(s) 253, 1036
PmaCI CACGTG 1 cut(s) 252
PmlI CACGTG 1 cut(s) 252
PpsI GAGTC 2 cut(s) 253, 1036
Ppu21I YACGTR 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 710, 1018
PspCI CACGTG 1 cut(s) 252
PspEI GGTNACC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 768
PspGI CCWGG 2 cut(s) 710, 1018
PspN4I GGNNCC 5 cut(s) 112, 150, 633, 744, 990
PspPI GGNCC 4 cut(s) 110, 148, 172, 632
PsrI GAACNNNNNNTAC 2 cut(s) 263, 295
PsuI RGATCY 4 cut(s) 330, 369, 742, 971
PvuI CGATCG 1 cut(s) 179
RsaI GTAC 5 cut(s) 245, 272, 450, 593, 833
RsaNI GTAC 5 cut(s) 244, 271, 449, 592, 832
RseI CAYNNNNRTG 3 cut(s) 32, 161, 713
Rsr2I CGGWCCG 1 cut(s) 172
RsrII CGGWCCG 1 cut(s) 172
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 3 cut(s) 693, 932, 1050
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 9 cut(s) 176, 264, 330, 369, 409, 505, 649, 742, 971
Sau96I GGNCC 4 cut(s) 110, 148, 172, 632
SchI GAGTC 2 cut(s) 253, 1036
ScrFI CCNGG 4 cut(s) 108, 303, 712, 1020
SexAI ACCWGGT 1 cut(s) 1018
SfaNI GCATC 2 cut(s) 153, 809
SinI GGWCC 3 cut(s) 148, 172, 632
SmiMI CAYNNNNRTG 3 cut(s) 32, 161, 713
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 5 cut(s) 82, 654, 888, 929, 1084
SsiI CCGC 4 cut(s) 9, 221, 318, 804
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 4 cut(s) 106, 301, 710, 1018
StyI CCWWGG 2 cut(s) 437, 857
TaaI ACNGT 3 cut(s) 120, 210, 453
TaiI ACGT 2 cut(s) 254, 938
TaqI TCGA 1 cut(s) 137
TaqII GACCGA 1 cut(s) 189
TasI AATT 5 cut(s) 82, 654, 888, 929, 1084
TatI WGTACW 4 cut(s) 243, 270, 448, 831
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 693, 932, 1050
Tru9I TTAA 3 cut(s) 693, 932, 1050
TscAI CASTG 1 cut(s) 458
TseFI GTSAC 3 cut(s) 34, 908, 1039
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 3 cut(s) 34, 908, 1039
TspDTI ATGAA 8 cut(s) 731, 749, 800, 832, 874, 881, 935, 1077
TspGWI ACGGA 4 cut(s) 34, 133, 185, 199
TspRI CASTG 1 cut(s) 458
Vha464I CTTAAG 1 cut(s) 692
VpaK11BI GGWCC 3 cut(s) 148, 172, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XmnI GAANNNNTTC 2 cut(s) 17, 614
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.