Rh6BG389600

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013842
Physical Location & Seq
Forward (+)
61805988 .. 61809105
3118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG389600.1

Sequence Viewer

Length: 1104 bp
ATGGGCTGCGGGAACTTCTTCTTCACCATTCTGGTGACCTTCTCCGTAGCTCTAATCACATACAACATAATCATCTCGGCCAATTCTCCACTCCAGCAAGACCTCCCCGGCCCCTCACGGTCGTCGTCGTCGTCGTCTTCCTCGATTTCCGTGGACCCCATCATCAAGATGCCGACGGACCGATCGCGAGGGAAATCGGCGAGCTCCAAGCGACTGTTCCACACGGCGGTTACGGCCTCGGATTCTGTGTACAACACGTGGCAGACTCGGATCATGTACTACTGGTTCAAGAAGTTTCAGAACGAACCGGGTTCGGAAATGGGCGGGTTCACTAGGATCTTGCATTCCGGTAAGCCTGATAAGTATATGGATGAGATCCCTACCTTCGTTGCTCAGCCTTTGCCTGCTGGAATGGATCGGGGATATATAGTTCTCAATAGGCCATGGGCATTTGTACAATGGCTTCAGCAAGCAAACATCAAAGAAGATTATATACTGATGTCTGAGCCAGATCATATAATTGTCAAGCCCATACCAAACTTGGCAAGAGATGGGCTTGGAAGTGCATTTCCTTTCTTTTACATTGAACCTAAGAAGTATGAGACAATACTCCGGAAATACTACCCTGAGGACAAGGGACCAATAACTAACATTGATCCAATTGGAAACTCTCCCGTCATTGTTGGGAAGGAAGCTCTTAAGAAGATTGCCCCCACCTGGATGAATGTTTCTTTGGCAATGAAAAAGGATCCTGAAACAGACAAAGCTTTTGGCTGGGTGCTTGAAATGTATGCTTATGCAACAGCATCCGCTCTTCATGGTGTTGGTAATATCTTGTACAAGGACTTCATGCTTCAGCCTCCATGGGATACAGAAATTGGCAAGAAGTTCATAATTCATTACACTTATGGATGTGACTATAATATGAAGGGTGAATTAACGTATGGAAAGATTGGAGAATGGAGATTTGACAAAAGATCTTACGATAATGCTGCACCACCTAAAAATCTTCCTTTACCTCCACCTGGTGTCCCAGAAAGTGTGGTGACTCTGGTTAAAATGGTGAATGAAGCCACAGCAAACATTCCAAATTGGGGGTCATAA

Protein Analysis

367

Amino Acids

41.28

Weight (kDa)

8.73

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPAT PF23452 73 - 365 1.3e-127 Hydroxyproline O-arabinosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25265
fragaria_vesca FvH4_2g28340
malus_domestica MD08G1153200.v1.1 MD15G1130300.v1.1
prunus_persica Prupe.1G485800_v2.0.a1
pyrus_communis pycom08g13260 pycom15g11750
rosa_chinensis RchiOBHm_Chr6g0297261
rosa_laevigata RLG00000011616
rosa_multiflora Rmu_sc0004535.1_g000002 Rmu_sc0007115.1_g000001
rosa_roxburghii Rroxscaffold_7G00170700
rosa_rugosa Rorug06G0270100
rosa_samantha Rh6BG389600 Rh6CG394800 Rh6DG381500
rosa_wichuraiana Rw6G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 812
AccII CGCG 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 612
AciI CCGC 4 cut(s) 9, 227, 324, 810
AclWI GGATC 7 cut(s) 278, 344, 370, 423, 650, 743, 756
AcoI YGGCCR 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 449, 839
AcvI CACGTG 1 cut(s) 258
AdeI CACNNNGTG 1 cut(s) 1028
AfaI GTAC 4 cut(s) 251, 278, 456, 839
AfiI CCNNNNNNNGG 4 cut(s) 226, 717, 1025, 1094
AflII CTTAAG 1 cut(s) 698
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 3 cut(s) 289, 587, 785
AjnI CCWGG 2 cut(s) 716, 1024
AjuI GAANNNNNNNTTGG 4 cut(s) 200, 232, 716, 748
AloI GAACNNNNNNTCC 2 cut(s) 414, 446
AluBI AGCT 4 cut(s) 50, 204, 695, 767
AluI AGCT 4 cut(s) 50, 204, 695, 767
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 596
AlwI GGATC 7 cut(s) 278, 344, 370, 423, 650, 743, 756
Aor13HI TCCGGA 1 cut(s) 612
AoxI GGCC 4 cut(s) 78, 109, 234, 440
ApeKI GCWGC 2 cut(s) 6, 992
ArsI GACNNNNNNTTYG 3 cut(s) 752, 784, 1082
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 4 cut(s) 110, 154, 178, 638
AsuC2I CCSGG 2 cut(s) 108, 309
AsuHPI GGTGA 5 cut(s) 16, 46, 944, 1057, 1075
AvaII GGWCC 3 cut(s) 154, 178, 638
AxyI CCTNAGG 1 cut(s) 627
BamHI GGATCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 206
BarI GAAGNNNNNNTAC 6 cut(s) 447, 477, 479, 509, 830, 862
BbrPI CACGTG 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 979
BccI CCATC 2 cut(s) 167, 545
BceAI ACGGC 2 cut(s) 240, 249
BcgI CGANNNNNNTGC 2 cut(s) 974, 1008
BciT130I CCWGG 2 cut(s) 718, 1026
BciVI GTATCC 1 cut(s) 862
BcnI CCSGG 2 cut(s) 108, 309
BcoDI GTCTC 1 cut(s) 596
BfaI CTAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 698
BfuI GTATCC 1 cut(s) 862
BglII AGATCT 1 cut(s) 977
BisI GCNGC 2 cut(s) 7, 993
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 2 cut(s) 8, 994
Bme1390I CCNGG 4 cut(s) 108, 309, 718, 1026
Bme18I GGWCC 3 cut(s) 154, 178, 638
BmgT120I GGNCC 4 cut(s) 110, 154, 178, 638
BmiI GGNNCC 4 cut(s) 112, 156, 639, 750
BmrFI CCNGG 4 cut(s) 108, 309, 718, 1026
BmsI GCATC 2 cut(s) 159, 815
BpiI GAAGAC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 393
BpuMI CCSGG 2 cut(s) 108, 309
BsaAI YACGTR 1 cut(s) 258
BsaJI CCNNGG 5 cut(s) 106, 150, 237, 443, 863
BsaWI WCCGGW 2 cut(s) 347, 612
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 717, 1025, 1094
Bse1I ACTGG 1 cut(s) 287
Bse21I CCTNAGG 1 cut(s) 627
Bse3DI GCAATG 1 cut(s) 744
BseAI TCCGGA 1 cut(s) 612
BseBI CCWGG 2 cut(s) 718, 1026
BseDI CCNNGG 5 cut(s) 106, 150, 237, 443, 863
BseGI GGATG 4 cut(s) 376, 726, 806, 917
BseLI CCNNNNNNNGG 4 cut(s) 226, 717, 1025, 1094
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 3 cut(s) 407, 495, 618
BseNI ACTGG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 979
BseYI CCCAGC 1 cut(s) 774
BsgI GTGCAG 1 cut(s) 978
Bsh1236I CGCG 1 cut(s) 187
Bsh1285I CGRYCG 2 cut(s) 122, 185
BshFI GGCC 4 cut(s) 80, 111, 236, 442
BsiEI CGRYCG 2 cut(s) 122, 185
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 4 cut(s) 108, 308, 348, 613
BslFI GGGAC 2 cut(s) 651, 1016
BslI CCNNNNNNNGG 4 cut(s) 226, 717, 1025, 1094
BsmAI GTCTC 1 cut(s) 596
BsmFI GGGAC 2 cut(s) 651, 1016
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 4 cut(s) 80, 111, 236, 442
Bsp1286I GDGCHC 1 cut(s) 206
Bsp13I TCCGGA 1 cut(s) 612
Bsp1407I TGTACA 3 cut(s) 249, 454, 837
Bsp143I GATC 9 cut(s) 182, 270, 336, 375, 415, 511, 655, 748, 977
Bsp1720I GCTNAGC 1 cut(s) 393
Bsp19I CCATGG 2 cut(s) 443, 863
Bsp68I TCGCGA 1 cut(s) 187
BspACI CCGC 4 cut(s) 9, 227, 324, 810
BspANI GGCC 4 cut(s) 80, 111, 236, 442
BspCNI CTCAG 3 cut(s) 406, 496, 619
BspEI TCCGGA 1 cut(s) 612
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 4 cut(s) 112, 156, 639, 750
BspPI GGATC 7 cut(s) 278, 344, 370, 423, 650, 743, 756
BspQI GCTCTTC 1 cut(s) 819
BspTI CTTAAG 1 cut(s) 698
BsrBI CCGCTC 1 cut(s) 812
BsrDI GCAATG 1 cut(s) 744
BsrGI TGTACA 3 cut(s) 249, 454, 837
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 5 cut(s) 106, 150, 237, 443, 863
BssMI GATC 9 cut(s) 182, 270, 336, 375, 415, 511, 655, 748, 977
BssT1I CCWWGG 2 cut(s) 443, 863
Bst2UI CCWGG 2 cut(s) 718, 1026
Bst4CI ACNGT 2 cut(s) 120, 216
Bst6I CTCTTC 1 cut(s) 819
BstAFI CTTAAG 1 cut(s) 698
BstAUI TGTACA 3 cut(s) 249, 454, 837
BstBAI YACGTR 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 202, 405, 471
BstDEI CTNAG 4 cut(s) 393, 504, 591, 627
BstDSI CCRYGG 3 cut(s) 150, 443, 863
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 4 cut(s) 376, 726, 806, 917
BstFNI CGCG 1 cut(s) 187
BstKTI GATC 9 cut(s) 185, 273, 339, 378, 418, 514, 658, 751, 980
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 9 cut(s) 182, 270, 336, 375, 415, 511, 655, 748, 977
BstMCI CGRYCG 2 cut(s) 122, 185
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 2 cut(s) 718, 1026
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 4 cut(s) 106, 307, 716, 1024
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 979
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 4 cut(s) 336, 375, 748, 977
BstYI RGATCY 4 cut(s) 336, 375, 748, 977
Bsu36I CCTNAGG 1 cut(s) 627
BsuI GTATCC 1 cut(s) 862
BsuRI GGCC 4 cut(s) 80, 111, 236, 442
BtgI CCRYGG 3 cut(s) 150, 443, 863
BtsCI GGATG 4 cut(s) 376, 726, 806, 917
BtuMI TCGCGA 1 cut(s) 187
Cac8I GCNNGC 3 cut(s) 202, 405, 471
Cfr13I GGNCC 4 cut(s) 110, 154, 178, 638
CpoI CGGWCCG 1 cut(s) 178
CsiI ACCWGGT 1 cut(s) 1024
Csp6I GTAC 4 cut(s) 250, 277, 455, 838
CspI CGGWCCG 1 cut(s) 178
CviAII CATG 5 cut(s) 274, 444, 818, 850, 864
CviQI GTAC 4 cut(s) 250, 277, 455, 838
DdeI CTNAG 4 cut(s) 393, 504, 591, 627
DpnI GATC 9 cut(s) 184, 272, 338, 377, 417, 513, 657, 750, 979
DpnII GATC 9 cut(s) 182, 270, 336, 375, 415, 511, 655, 748, 977
DraIII CACNNNGTG 1 cut(s) 1028
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 819
EarI CTCTTC 1 cut(s) 819
Ecl136II GAGCTC 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 443, 863
Eco24I GRGCYC 1 cut(s) 206
Eco47I GGWCC 3 cut(s) 154, 178, 638
Eco53kI GAGCTC 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 449, 839
Eco72I CACGTG 1 cut(s) 258
Eco81I CCTNAGG 1 cut(s) 627
Eco91I GGTNACC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 204
EcoO65I GGTNACC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 716, 1024
EcoT14I CCWWGG 2 cut(s) 443, 863
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 2 cut(s) 443, 863
FaeI CATG 5 cut(s) 277, 447, 821, 853, 867
FaqI GGGAC 2 cut(s) 651, 1016
FatI CATG 5 cut(s) 273, 443, 817, 849, 863
FauI CCCGC 2 cut(s) 2, 317
Fnu4HI GCNGC 2 cut(s) 7, 993
FokI GGATG 4 cut(s) 383, 733, 793, 924
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 7, 993
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 7, 993
GsaI CCCAGC 1 cut(s) 778
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 4 cut(s) 80, 111, 236, 442
HapII CCGG 4 cut(s) 108, 308, 348, 613
Hin1II CATG 5 cut(s) 277, 447, 821, 853, 867
HindIII AAGCTT 1 cut(s) 765
HinfI GANTC 3 cut(s) 242, 265, 1048
HpaII CCGG 4 cut(s) 108, 308, 348, 613
HphI GGTGA 5 cut(s) 16, 46, 944, 1057, 1075
Hpy166II GTNNAC 3 cut(s) 154, 250, 330
Hpy188I TCNGA 5 cut(s) 241, 270, 300, 316, 505
Hpy188III TCNNGA 5 cut(s) 166, 186, 289, 613, 752
Hpy8I GTNNAC 3 cut(s) 154, 250, 330
Hpy99I CGWCG 5 cut(s) 127, 130, 133, 136, 178
HpyAV CCTTC 4 cut(s) 49, 394, 682, 922
HpyCH4III ACNGT 2 cut(s) 120, 216
HpyCH4IV ACGT 2 cut(s) 257, 941
HpyCH4V TGCA 4 cut(s) 343, 566, 800, 995
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 4 cut(s) 393, 504, 591, 627
HpySE526I ACGT 2 cut(s) 257, 941
Hsp92II CATG 5 cut(s) 277, 447, 821, 853, 867
Kpn2I TCCGGA 1 cut(s) 612
Kzo9I GATC 9 cut(s) 182, 270, 336, 375, 415, 511, 655, 748, 977
LguI GCTCTTC 1 cut(s) 819
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 1 cut(s) 979
LweI GCATC 2 cut(s) 159, 815
MabI ACCWGGT 1 cut(s) 1024
MaeI CTAG 1 cut(s) 333
MaeII ACGT 2 cut(s) 257, 941
MaeIII GTNAC 4 cut(s) 34, 229, 914, 1045
MalI GATC 9 cut(s) 184, 272, 338, 377, 417, 513, 657, 750, 979
MbiI CCGCTC 1 cut(s) 812
MboI GATC 9 cut(s) 182, 270, 336, 375, 415, 511, 655, 748, 977
MboII GAAGA 7 cut(s) 10, 13, 129, 497, 715, 806, 1001
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 4 cut(s) 336, 375, 748, 977
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 7 cut(s) 82, 519, 660, 876, 894, 935, 1090
MlyI GAGTC 2 cut(s) 259, 1042
MnlI CCTC 8 cut(s) 113, 124, 151, 182, 247, 622, 870, 1029
MroI TCCGGA 1 cut(s) 612
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 3 cut(s) 699, 938, 1056
MslI CAYNNNNRTG 3 cut(s) 32, 167, 719
MspCI CTTAAG 1 cut(s) 698
MspI CCGG 4 cut(s) 108, 308, 348, 613
MspR9I CCNGG 4 cut(s) 108, 309, 718, 1026
MunI CAATTG 1 cut(s) 660
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 2 cut(s) 718, 1026
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 2 cut(s) 108, 309
NcoI CCATGG 2 cut(s) 443, 863
NdeII GATC 9 cut(s) 182, 270, 336, 375, 415, 511, 655, 748, 977
NlaIII CATG 5 cut(s) 277, 447, 821, 853, 867
NlaIV GGNNCC 4 cut(s) 112, 156, 639, 750
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 3 cut(s) 34, 914, 1045
NruI TCGCGA 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 819
PcsI WCGNNNNNNNCGW 3 cut(s) 128, 131, 140
PctI GAATGC 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 8, 994
Ple19I CGATCG 1 cut(s) 185
PleI GAGTC 2 cut(s) 259, 1042
PmaCI CACGTG 1 cut(s) 258
PmlI CACGTG 1 cut(s) 258
PpsI GAGTC 2 cut(s) 259, 1042
Ppu21I YACGTR 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 716, 1024
PspCI CACGTG 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 774
PspGI CCWGG 2 cut(s) 716, 1024
PspN4I GGNNCC 4 cut(s) 112, 156, 639, 750
PspPI GGNCC 4 cut(s) 110, 154, 178, 638
PsrI GAACNNNNNNTAC 2 cut(s) 269, 301
PsuI RGATCY 4 cut(s) 336, 375, 748, 977
PvuI CGATCG 1 cut(s) 185
RruI TCGCGA 1 cut(s) 187
RsaI GTAC 4 cut(s) 251, 278, 456, 839
RsaNI GTAC 4 cut(s) 250, 277, 455, 838
RseI CAYNNNNRTG 3 cut(s) 32, 167, 719
Rsr2I CGGWCCG 1 cut(s) 178
RsrII CGGWCCG 1 cut(s) 178
SacI GAGCTC 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 819
SaqAI TTAA 3 cut(s) 699, 938, 1056
SatI GCNGC 2 cut(s) 7, 993
Sau3AI GATC 9 cut(s) 182, 270, 336, 375, 415, 511, 655, 748, 977
Sau96I GGNCC 4 cut(s) 110, 154, 178, 638
SchI GAGTC 2 cut(s) 259, 1042
ScrFI CCNGG 4 cut(s) 108, 309, 718, 1026
SduI GDGCHC 1 cut(s) 206
SexAI ACCWGGT 1 cut(s) 1024
SfaNI GCATC 2 cut(s) 159, 815
SinI GGWCC 3 cut(s) 154, 178, 638
SmiMI CAYNNNNRTG 3 cut(s) 32, 167, 719
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
Sse9I AATT 7 cut(s) 82, 519, 660, 876, 894, 935, 1090
SsiI CCGC 4 cut(s) 9, 227, 324, 810
SspMI CTAG 1 cut(s) 333
SstI GAGCTC 1 cut(s) 206
StyD4I CCNGG 4 cut(s) 106, 307, 716, 1024
StyI CCWWGG 2 cut(s) 443, 863
TaaI ACNGT 2 cut(s) 120, 216
TaiI ACGT 2 cut(s) 260, 944
TaqI TCGA 1 cut(s) 143
TaqII GACCGA 1 cut(s) 195
TasI AATT 7 cut(s) 82, 519, 660, 876, 894, 935, 1090
TatI WGTACW 4 cut(s) 249, 276, 454, 837
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 3 cut(s) 699, 938, 1056
Tru9I TTAA 3 cut(s) 699, 938, 1056
TseFI GTSAC 3 cut(s) 34, 914, 1045
TseI GCWGC 2 cut(s) 6, 992
Tsp45I GTSAC 3 cut(s) 34, 914, 1045
TspDTI ATGAA 8 cut(s) 737, 755, 806, 838, 880, 887, 941, 1083
TspGWI ACGGA 3 cut(s) 34, 139, 191
Vha464I CTTAAG 1 cut(s) 698
VpaK11BI GGWCC 3 cut(s) 154, 178, 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.