MD08G1153200.v1.1

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013842
Physical Location & Seq
Reverse (-)
16643394 .. 16646311
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1153200.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGGGTTGTGGGAATTTCTTCTGCAACGTACTCCTGACCTTCTCCGTGGCTCTGATCACATACAACATCATCATCTCAGCCAATTCACCACTCCAGCAGGACCTTCCCGGTCCGTCGAGATCATCATCGTCGGTTGCAGTGGACCCCATCATCCAGATGCCAATGCACAGATCGCGAGGCAAATCGGGGAGCTCCAAGCGACTGTTCCACACGGCGGTGACAGCCTCCGACTCCGTCTACAACACGTGGCAGTGCAGGATCATGTACTACTGGTTCAAGAAGTTTCAGAACGAACCCGGCTCGGAGATGGGCGGGTTCACTAGGATCCTGCACAATGGGAAGCCGGACAAGTACATGGATGAAATCCCTACTTTTATTGCTCAGCCTTTGCCTGCTGGAATGGATCGGGGTTATATTGTTCTCAACCGACCATGGGCATTTGTGCAATGGCTTCAGCAAGCAGACATTAAAGAAGATTACATACTGATGTCAGAGCCCGATCATGTAATTGTCAAGCCAATACCGAACTTGTCTATTGATGGGCTTGGAGCTGCATTTCCTTTCTTCTACATTGAACCGACGAAGTATGAGTCGGTCCTCCGGAAATACTTCCCTGAGGACAAGGGACCAATAACTAAAATTGATCCAATTGGAAATTCTCCCGTCATCGTTGGGAAGGAATCTCTCAAGAAAATTGCTCCCACGTGGATGAATGTTTCTTTGGCAATGAAGAAGGATCCTGAGACAGACAAAGCTTTTGGTTGGGTTCTTGAAATGTATGCTTATGCTGTTGCATCCGCTCACCATGGGGTTGGTAATATCTTATACAAGGACTTCATGCTTCAGCCTCCGTGGGATAAAGAAATTGGCAAGAAGTTCATAATTCATTACACGTATGGATGTGACTATAATATGAAGGGTGAACTAACATATGGGAAAATTGGAGAATGGAGATTTGATAAACGGTCTTATGATACTGTTGCACCGCCTAGAAACCTTCCTATGCCTCCACATGGTGTTCCAGAAAGCGTGGTGACCCTGGTGAAAATGTTGAATGAAGCCACAGCAAACATTCCAAGTTGGGGGGAATAG

Protein Analysis

364

Amino Acids

41.04

Weight (kDa)

8.16

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPAT PF23452 69 - 361 1.2e-127 Hydroxyproline O-arabinosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25265
fragaria_vesca FvH4_2g28340
malus_domestica MD08G1153200.v1.1 MD15G1130300.v1.1
prunus_persica Prupe.1G485800_v2.0.a1
pyrus_communis pycom08g13260 pycom15g11750
rosa_chinensis RchiOBHm_Chr6g0297261
rosa_laevigata RLG00000011616
rosa_multiflora Rmu_sc0004535.1_g000002 Rmu_sc0007115.1_g000001
rosa_roxburghii Rroxscaffold_7G00170700
rosa_rugosa Rorug06G0270100
rosa_samantha Rh6BG389600 Rh6CG394800 Rh6DG381500
rosa_wichuraiana Rw6G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 800
AccI GTMKAC 1 cut(s) 237
AccII CGCG 1 cut(s) 175
AccIII TCCGGA 1 cut(s) 600
AciI CCGC 4 cut(s) 215, 312, 798, 986
AclWI GGATC 7 cut(s) 266, 319, 332, 411, 638, 731, 744
AcsI RAATTY 2 cut(s) 13, 655
AcuI CTGAAG 2 cut(s) 437, 827
AcvI CACGTG 2 cut(s) 246, 705
AdeI CACNNNGTG 1 cut(s) 1016
AfaI GTAC 3 cut(s) 30, 266, 353
AfiI CCNNNNNNNGG 4 cut(s) 214, 433, 1013, 1082
AflIII ACRYGT 2 cut(s) 243, 891
AgsI TTSAA 4 cut(s) 277, 575, 773, 1054
AjnI CCWGG 1 cut(s) 1038
AjuI GAANNNNNNNTTGG 6 cut(s) 188, 220, 640, 672, 704, 736
AleI CACNNNNGTG 1 cut(s) 215
AluBI AGCT 3 cut(s) 192, 551, 755
AluI AGCT 3 cut(s) 192, 551, 755
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 737
AlwI GGATC 7 cut(s) 266, 319, 332, 411, 638, 731, 744
Aor13HI TCCGGA 1 cut(s) 600
ApeKI GCWGC 1 cut(s) 551
ApoI RAATTY 2 cut(s) 13, 655
ArsI GACNNNNNNTTYG 4 cut(s) 575, 607, 740, 772
Asp700I GAANNNNTTC 2 cut(s) 17, 608
AspS9I GGNCC 5 cut(s) 100, 110, 142, 595, 626
AsuC2I CCSGG 2 cut(s) 108, 297
AsuHPI GGTGA 6 cut(s) 78, 229, 794, 932, 1045, 1054
AvaII GGWCC 5 cut(s) 100, 110, 142, 595, 626
AxyI CCTNAGG 1 cut(s) 615
BamHI GGATCC 2 cut(s) 324, 736
BanII GRGCYC 2 cut(s) 194, 498
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
BbrPI CACGTG 2 cut(s) 246, 705
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 538
BccI CCATC 3 cut(s) 155, 301, 533
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 1040
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 2 cut(s) 108, 297
BcoDI GTCTC 1 cut(s) 737
BfaI CTAG 2 cut(s) 321, 990
BisI GCNGC 1 cut(s) 552
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 553
Bme1390I CCNGG 3 cut(s) 108, 297, 1040
Bme18I GGWCC 5 cut(s) 100, 110, 142, 595, 626
BmgT120I GGNCC 5 cut(s) 100, 110, 142, 595, 626
BmiI GGNNCC 4 cut(s) 144, 326, 627, 738
BmrFI CCNGG 3 cut(s) 108, 297, 1040
BmsI GCATC 2 cut(s) 147, 803
BpmI CTGGAG 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 2 cut(s) 108, 297
BsaAI YACGTR 3 cut(s) 246, 705, 894
BsaBI GATNNNNATC 1 cut(s) 124
BsaJI CCNNGG 5 cut(s) 45, 431, 805, 851, 1038
BsaWI WCCGGW 1 cut(s) 600
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 433, 1013, 1082
Bse1I ACTGG 1 cut(s) 275
Bse21I CCTNAGG 1 cut(s) 615
Bse3DI GCAATG 2 cut(s) 452, 732
Bse8I GATNNNNATC 1 cut(s) 124
BseAI TCCGGA 1 cut(s) 600
BseBI CCWGG 1 cut(s) 1040
BseDI CCNNGG 5 cut(s) 45, 431, 805, 851, 1038
BseGI GGATG 5 cut(s) 150, 364, 714, 794, 905
BseJI GATNNNNATC 1 cut(s) 124
BseLI CCNNNNNNNGG 4 cut(s) 214, 433, 1013, 1082
BseMI GCAATG 2 cut(s) 452, 732
BseMII CTCAG 4 cut(s) 90, 395, 606, 732
BseNI ACTGG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 538
BsgI GTGCAG 2 cut(s) 274, 314
Bsh1236I CGCG 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 4 cut(s) 108, 297, 344, 601
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 4 cut(s) 214, 433, 1013, 1082
BsmAI GTCTC 1 cut(s) 737
BsmFI GGGAC 1 cut(s) 639
Bsp1286I GDGCHC 2 cut(s) 194, 498
Bsp13I TCCGGA 1 cut(s) 600
Bsp143I GATC 9 cut(s) 54, 119, 170, 258, 324, 403, 499, 643, 736
Bsp1720I GCTNAGC 1 cut(s) 381
Bsp19I CCATGG 2 cut(s) 431, 805
Bsp68I TCGCGA 1 cut(s) 175
BspACI CCGC 4 cut(s) 215, 312, 798, 986
BspCNI CTCAG 4 cut(s) 89, 394, 607, 733
BspEI TCCGGA 1 cut(s) 600
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 4 cut(s) 144, 326, 627, 738
BspPI GGATC 7 cut(s) 266, 319, 332, 411, 638, 731, 744
BsrBI CCGCTC 1 cut(s) 800
BsrDI GCAATG 2 cut(s) 452, 732
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 5 cut(s) 45, 431, 805, 851, 1038
BssMI GATC 9 cut(s) 54, 119, 170, 258, 324, 403, 499, 643, 736
BssT1I CCWWGG 2 cut(s) 431, 805
Bst2UI CCWGG 1 cut(s) 1040
Bst4CI ACNGT 3 cut(s) 204, 966, 979
BstBAI YACGTR 3 cut(s) 246, 705, 894
BstC8I GCNNGC 2 cut(s) 393, 459
BstDEI CTNAG 4 cut(s) 76, 381, 615, 741
BstDSI CCRYGG 4 cut(s) 45, 431, 805, 851
BstEII GGTNACC 1 cut(s) 1033
BstF5I GGATG 5 cut(s) 150, 364, 714, 794, 905
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 9 cut(s) 57, 122, 173, 261, 327, 406, 502, 646, 739
BstMAI GTCTC 1 cut(s) 737
BstMBI GATC 9 cut(s) 54, 119, 170, 258, 324, 403, 499, 643, 736
BstMWI GCNNNNNNNGC 2 cut(s) 172, 221
BstNI CCWGG 1 cut(s) 1040
BstPI GGTNACC 1 cut(s) 1033
BstSCI CCNGG 3 cut(s) 106, 295, 1038
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 538
BstX2I RGATCY 2 cut(s) 324, 736
BstXI CCANNNNNNTGG 1 cut(s) 812
BstYI RGATCY 2 cut(s) 324, 736
Bsu36I CCTNAGG 1 cut(s) 615
BtgI CCRYGG 4 cut(s) 45, 431, 805, 851
BtsCI GGATG 5 cut(s) 150, 364, 714, 794, 905
BtsI GCAGTG 2 cut(s) 144, 257
BtsIMutI CAGTG 2 cut(s) 144, 257
BtuMI TCGCGA 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 393, 459
Cfr13I GGNCC 5 cut(s) 100, 110, 142, 595, 626
CpoI CGGWCCG 1 cut(s) 110
Csp6I GTAC 3 cut(s) 29, 265, 352
CspI CGGWCCG 1 cut(s) 110
CviAII CATG 7 cut(s) 262, 355, 432, 503, 806, 838, 1013
CviQI GTAC 3 cut(s) 29, 265, 352
DdeI CTNAG 4 cut(s) 76, 381, 615, 741
DpnI GATC 9 cut(s) 56, 121, 172, 260, 326, 405, 501, 645, 738
DpnII GATC 9 cut(s) 54, 119, 170, 258, 324, 403, 499, 643, 736
DraIII CACNNNGTG 1 cut(s) 1016
Ecl136II GAGCTC 1 cut(s) 192
Eco130I CCWWGG 2 cut(s) 431, 805
Eco24I GRGCYC 2 cut(s) 194, 498
Eco47I GGWCC 5 cut(s) 100, 110, 142, 595, 626
Eco53kI GAGCTC 1 cut(s) 192
Eco57I CTGAAG 2 cut(s) 437, 827
Eco72I CACGTG 2 cut(s) 246, 705
Eco81I CCTNAGG 1 cut(s) 615
Eco91I GGTNACC 1 cut(s) 1033
EcoICRI GAGCTC 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 1033
EcoRII CCWGG 1 cut(s) 1038
EcoT14I CCWWGG 2 cut(s) 431, 805
EcoT38I GRGCYC 2 cut(s) 194, 498
ErhI CCWWGG 2 cut(s) 431, 805
FaeI CATG 7 cut(s) 265, 358, 435, 506, 809, 841, 1016
FaqI GGGAC 1 cut(s) 639
FatI CATG 7 cut(s) 261, 354, 431, 502, 805, 837, 1012
FauI CCCGC 1 cut(s) 305
FauNDI CATATG 1 cut(s) 931
FbaI TGATCA 1 cut(s) 54
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 552
FokI GGATG 5 cut(s) 137, 371, 721, 781, 912
FriOI GRGCYC 2 cut(s) 194, 498
Fsp4HI GCNGC 1 cut(s) 552
FspBI CTAG 2 cut(s) 321, 990
GluI GCNGC 1 cut(s) 552
GsuI CTGGAG 1 cut(s) 77
HapII CCGG 4 cut(s) 108, 297, 344, 601
Hin1II CATG 7 cut(s) 265, 358, 435, 506, 809, 841, 1016
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 3 cut(s) 230, 590, 680
HpaII CCGG 4 cut(s) 108, 297, 344, 601
HphI GGTGA 6 cut(s) 78, 229, 794, 932, 1045, 1054
Hpy166II GTNNAC 4 cut(s) 142, 238, 318, 923
Hpy188I TCNGA 5 cut(s) 54, 229, 288, 304, 493
Hpy8I GTNNAC 4 cut(s) 142, 238, 318, 923
Hpy99I CGWCG 3 cut(s) 118, 133, 583
HpyAV CCTTC 6 cut(s) 49, 113, 670, 727, 910, 1007
HpyCH4III ACNGT 3 cut(s) 204, 966, 979
HpyCH4IV ACGT 4 cut(s) 27, 245, 704, 893
HpyCH4V TGCA 9 cut(s) 24, 137, 166, 255, 331, 445, 554, 794, 983
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 221
HpyF3I CTNAG 4 cut(s) 76, 381, 615, 741
HpySE526I ACGT 4 cut(s) 27, 245, 704, 893
Hsp92II CATG 7 cut(s) 265, 358, 435, 506, 809, 841, 1016
Kpn2I TCCGGA 1 cut(s) 600
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 9 cut(s) 54, 119, 170, 258, 324, 403, 499, 643, 736
LmnI GCTCC 4 cut(s) 189, 197, 548, 703
Lsp1109I GCAGC 1 cut(s) 538
LweI GCATC 2 cut(s) 147, 803
MaeI CTAG 2 cut(s) 321, 990
MaeII ACGT 4 cut(s) 27, 245, 704, 893
MaeIII GTNAC 3 cut(s) 217, 902, 1033
MalI GATC 9 cut(s) 56, 121, 172, 260, 326, 405, 501, 645, 738
MbiI CCGCTC 1 cut(s) 800
MboI GATC 9 cut(s) 54, 119, 170, 258, 324, 403, 499, 643, 736
MboII GAAGA 4 cut(s) 10, 485, 556, 742
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 2 cut(s) 324, 736
MhlI GDGCHC 2 cut(s) 194, 498
MlyI GAGTC 2 cut(s) 224, 599
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 6 cut(s) 170, 235, 608, 610, 858, 1017
MroI TCCGGA 1 cut(s) 600
MroXI GAANNNNTTC 2 cut(s) 17, 608
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 4 cut(s) 155, 215, 485, 707
MspI CCGG 4 cut(s) 108, 297, 344, 601
MspR9I CCNGG 3 cut(s) 108, 297, 1040
MunI CAATTG 1 cut(s) 648
MvaI CCWGG 1 cut(s) 1040
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 172, 221
NciI CCSGG 2 cut(s) 108, 297
NcoI CCATGG 2 cut(s) 431, 805
NdeI CATATG 1 cut(s) 931
NdeII GATC 9 cut(s) 54, 119, 170, 258, 324, 403, 499, 643, 736
NlaIII CATG 7 cut(s) 265, 358, 435, 506, 809, 841, 1016
NlaIV GGNNCC 4 cut(s) 144, 326, 627, 738
NmuCI GTSAC 3 cut(s) 217, 902, 1033
NruI TCGCGA 1 cut(s) 175
OliI CACNNNNGTG 1 cut(s) 215
PdmI GAANNNNTTC 2 cut(s) 17, 608
PfeI GAWTC 1 cut(s) 680
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 553
PleI GAGTC 2 cut(s) 224, 598
PmaCI CACGTG 2 cut(s) 246, 705
PmlI CACGTG 2 cut(s) 246, 705
PpsI GAGTC 2 cut(s) 224, 598
Ppu21I YACGTR 3 cut(s) 246, 705, 894
PpuMI RGGWCCY 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 1038
PspCI CACGTG 2 cut(s) 246, 705
PspEI GGTNACC 1 cut(s) 1033
PspGI CCWGG 1 cut(s) 1038
PspN4I GGNNCC 4 cut(s) 144, 326, 627, 738
PspPI GGNCC 5 cut(s) 100, 110, 142, 595, 626
PspPPI RGGWCCY 1 cut(s) 100
PsrI GAACNNNNNNTAC 2 cut(s) 257, 289
PsuI RGATCY 2 cut(s) 324, 736
PsyI GACNNNGTC 1 cut(s) 233
RruI TCGCGA 1 cut(s) 175
RsaI GTAC 3 cut(s) 30, 266, 353
RsaNI GTAC 3 cut(s) 29, 265, 352
RseI CAYNNNNRTG 4 cut(s) 155, 215, 485, 707
Rsr2I CGGWCCG 1 cut(s) 110
RsrII CGGWCCG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 1 cut(s) 552
Sau3AI GATC 9 cut(s) 54, 119, 170, 258, 324, 403, 499, 643, 736
Sau96I GGNCC 5 cut(s) 100, 110, 142, 595, 626
SchI GAGTC 2 cut(s) 224, 599
ScrFI CCNGG 3 cut(s) 108, 297, 1040
SduI GDGCHC 2 cut(s) 194, 498
SfaNI GCATC 2 cut(s) 147, 803
SinI GGWCC 5 cut(s) 100, 110, 142, 595, 626
SmiMI CAYNNNNRTG 4 cut(s) 155, 215, 485, 707
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
SsiI CCGC 4 cut(s) 215, 312, 798, 986
SspMI CTAG 2 cut(s) 321, 990
SstI GAGCTC 1 cut(s) 194
StyD4I CCNGG 3 cut(s) 106, 295, 1038
StyI CCWWGG 2 cut(s) 431, 805
TaaI ACNGT 3 cut(s) 204, 966, 979
TaiI ACGT 4 cut(s) 30, 248, 707, 896
TaqI TCGA 1 cut(s) 116
TaqII GACCGA 1 cut(s) 583
TatI WGTACW 2 cut(s) 264, 351
TfiI GAWTC 1 cut(s) 680
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 2 cut(s) 144, 257
TseFI GTSAC 3 cut(s) 217, 902, 1033
TseI GCWGC 1 cut(s) 551
Tsp45I GTSAC 3 cut(s) 217, 902, 1033
TspDTI ATGAA 8 cut(s) 375, 725, 743, 826, 868, 875, 929, 1071
TspGWI ACGGA 4 cut(s) 34, 102, 223, 840
TspRI CASTG 2 cut(s) 144, 257
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 5 cut(s) 100, 110, 142, 595, 626
XapI RAATTY 2 cut(s) 13, 655
XmiI GTMKAC 1 cut(s) 237
XmnI GAANNNNTTC 2 cut(s) 17, 608
XspI CTAG 2 cut(s) 321, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.