Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013842

Physical Location & Seq

Genomic Coordinates Reverse (-)

40457431 .. 40460839

Gene Structure 3409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G485800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGTTGCGGCAATTTCTTCTTCACGATACTTGTGACCTTCTCTGTAGCTCTGATAACATACAACATAATAATCTCAGCTAATTCACCACTCCAGCAAGACCTCCCAGGCCCATCAAGATCATCGTCGTCGTCCATTTCTGTGGACCCCATAATCCAGATGCCATTGCACAGATCGAGAGGGAAATTAGGGAGCTCCAAGAGACTGTTCCACACGGCAGTGACAGCCTCCGACTCTGTGTACAATACGTGGCAGTGTAGGATCATGTACTACTGGTTCAAGAAGTTTCAGAACGAACCCAATTCAGGAATGGGTGGGTTCACTAGGATCTTGCACTCTGGGAAGCCTGACAAGTACATGGATGAGATCCCAACCTTTGTTGCTCAGCCTTTGCCTGCTGGAATGGATCGGGGTTATATAGTTCTGAATAGACCGTGGGCATTTGTACAATGGCTTCAGCAAGCAGACATCAAAGAAGATTATATACTGATGTCTGAGCCAGATCATATAATTGTCAAGCCCATACCAAACTTGGCCACTGATGGGCTTGGAGCTGCATTTCCTTTCTTTTACATTGAACCTAAAAAGTATGAGTCAGTACTCCGGAAGTACTTCCCTGAGAACAAGGGACCAATAACTAACATTGATCCTATTGGAAATTCTCCCGTCATTGTTGGGAAGGAATCTCTTAAGAAGATTGCTCCCACCTGGATGAATGTTTCTTTGGCAATGAAGAAGGATCCTGAAACAGACAAAGCTTTTGGTTGGGTGCTTGAAATGTATGCTTATGCTGTTGCATCCGCTGTACATGGTGTTGGTAATATATTGTACAAGGACTTCATGATTCAGCCTCCGTGGGATAAAGAGATTGGCAAGAAGTTCATAATTCATTACACTTACGGATGTGACTATAATATGAAGGGTGAATTAACATACGGAAAGATTGGAGAATGGAGATTTGACAAAAGATCTTACGATAGTGTTGCACCGCCTAGAAACCTTCCTATGCCTCCAGCTGGTGTTCCAGAAAGCGTGGTGACTCTGGTGAGAATGGTCAATGAAGCCACAGCAAACATTCCAAATTGGGGCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

41.06

Weight (kDa)

8.7

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25265
fragaria_vesca	FvH4_2g28340
malus_domestica	MD08G1153200.v1.1 MD15G1130300.v1.1
prunus_persica	Prupe.1G485800_v2.0.a1
pyrus_communis	pycom08g13260 pycom15g11750
rosa_chinensis	RchiOBHm_Chr6g0297261
rosa_laevigata	RLG00000011616
rosa_multiflora	Rmu_sc0004535.1_g000002 Rmu_sc0007115.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170700
rosa_rugosa	Rorug06G0270100
rosa_samantha	Rh6BG389600 Rh6CG394800 Rh6DG381500
rosa_wichuraiana	Rw6G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	603
AciI	CCGC	3 cut(s)	9, 801, 989
AclWI	GGATC	7 cut(s)	269, 335, 361, 414, 641, 734, 747
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	658
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	8 cut(s)	242, 269, 356, 447, 600, 611, 807, 830
AfiI	CCNNNNNNNGG	4 cut(s)	305, 543, 1016, 1085
AflII	CTTAAG	1 cut(s)	689
AgsI	TTSAA	3 cut(s)	280, 578, 776
AjnI	CCWGG	2 cut(s)	106, 707
AjuI	GAANNNNNNNTTGG	4 cut(s)	191, 223, 707, 739
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	50, 80, 195, 554, 758, 1016
AluI	AGCT	6 cut(s)	50, 80, 195, 554, 758, 1016
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	7 cut(s)	269, 335, 361, 414, 641, 734, 747
Aor13HI	TCCGGA	1 cut(s)	603
AoxI	GGCC	2 cut(s)	109, 534
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	658
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
Asp700I	GAANNNNTTC	1 cut(s)	611
AspS9I	GGNCC	3 cut(s)	110, 145, 629
AsuHPI	GGTGA	4 cut(s)	78, 935, 1048, 1057
AvaII	GGWCC	2 cut(s)	145, 629
BalI	TGGCCA	1 cut(s)	536
BamHI	GGATCC	1 cut(s)	739
BanII	GRGCYC	1 cut(s)	197
BarI	GAAGNNNNNNTAC	6 cut(s)	438, 468, 470, 500, 821, 853
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	2 cut(s)	121, 536
BceAI	ACGGC	1 cut(s)	231
BcgI	CGANNNNNNTGC	2 cut(s)	965, 999
BciT130I	CCWGG	2 cut(s)	108, 709
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	2 cut(s)	324, 993
BfmI	CTRYAG	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	689
BglII	AGATCT	1 cut(s)	968
BisI	GCNGC	2 cut(s)	10, 555
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	2 cut(s)	11, 556
BmcAI	AGTACT	2 cut(s)	600, 611
Bme1390I	CCNGG	2 cut(s)	108, 709
Bme18I	GGWCC	2 cut(s)	145, 629
BmgT120I	GGNCC	3 cut(s)	110, 145, 629
BmiI	GGNNCC	3 cut(s)	147, 630, 741
BmrFI	CCNGG	2 cut(s)	108, 709
BmsI	GCATC	2 cut(s)	150, 806
BpmI	CTGGAG	2 cut(s)	77, 996
Bpu1102I	GCTNAGC	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	249
BsaJI	CCNNGG	3 cut(s)	106, 434, 854
BsaWI	WCCGGW	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	4 cut(s)	305, 543, 1016, 1085
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	2 cut(s)	164, 735
BseAI	TCCGGA	1 cut(s)	603
BseBI	CCWGG	2 cut(s)	108, 709
BseDI	CCNNGG	3 cut(s)	106, 434, 854
BseGI	GGATG	4 cut(s)	367, 717, 797, 908
BseLI	CCNNNNNNNGG	4 cut(s)	305, 543, 1016, 1085
BseMI	GCAATG	2 cut(s)	164, 735
BseMII	CTCAG	4 cut(s)	90, 398, 486, 609
BseNI	ACTGG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	541
BshFI	GGCC	2 cut(s)	111, 536
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	604
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	4 cut(s)	305, 543, 1016, 1085
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	2 cut(s)	111, 536
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	603
Bsp1407I	TGTACA	4 cut(s)	240, 445, 805, 828
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	3 cut(s)	9, 801, 989
BspANI	GGCC	2 cut(s)	111, 536
BspCNI	CTCAG	4 cut(s)	89, 397, 487, 610
BspEI	TCCGGA	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	840
BspLI	GGNNCC	3 cut(s)	147, 630, 741
BspPI	GGATC	7 cut(s)	269, 335, 361, 414, 641, 734, 747
BspTI	CTTAAG	1 cut(s)	689
BsrDI	GCAATG	2 cut(s)	164, 735
BsrGI	TGTACA	4 cut(s)	240, 445, 805, 828
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	106, 434, 854
Bst2UI	CCWGG	2 cut(s)	108, 709
Bst4CI	ACNGT	2 cut(s)	207, 435
BstAFI	CTTAAG	1 cut(s)	689
BstAUI	TGTACA	4 cut(s)	240, 445, 805, 828
BstBAI	YACGTR	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	396, 462
BstDEI	CTNAG	4 cut(s)	76, 384, 495, 618
BstDSI	CCRYGG	2 cut(s)	434, 854
BstF5I	GGATG	4 cut(s)	367, 717, 797, 908
BstMAI	GTCTC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	2 cut(s)	108, 709
BstSCI	CCNGG	2 cut(s)	106, 707
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	4 cut(s)	327, 366, 739, 968
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	4 cut(s)	327, 366, 739, 968
BsuRI	GGCC	2 cut(s)	111, 536
BtgI	CCRYGG	2 cut(s)	434, 854
BtsCI	GGATG	4 cut(s)	367, 717, 797, 908
BtsI	GCAGTG	2 cut(s)	225, 260
BtsIMutI	CAGTG	3 cut(s)	225, 260, 537
Cac8I	GCNNGC	2 cut(s)	396, 462
CciI	TCATGA	1 cut(s)	840
Cfr13I	GGNCC	3 cut(s)	110, 145, 629
Csp6I	GTAC	8 cut(s)	241, 268, 355, 446, 599, 610, 806, 829
CviAII	CATG	4 cut(s)	265, 358, 809, 841
CviQI	GTAC	8 cut(s)	241, 268, 355, 446, 599, 610, 806, 829
DdeI	CTNAG	4 cut(s)	76, 384, 495, 618
EaeI	YGGCCR	1 cut(s)	534
Ecl136II	GAGCTC	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	145, 629
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	106, 707
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	4 cut(s)	268, 361, 812, 844
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	4 cut(s)	264, 357, 808, 840
Fnu4HI	GCNGC	2 cut(s)	10, 555
FokI	GGATG	4 cut(s)	374, 724, 784, 915
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	10, 555
FspBI	CTAG	2 cut(s)	324, 993
GluI	GCNGC	2 cut(s)	10, 555
GsuI	CTGGAG	2 cut(s)	77, 996
HaeIII	GGCC	2 cut(s)	111, 536
HapII	CCGG	1 cut(s)	604
Hin1II	CATG	4 cut(s)	268, 361, 812, 844
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	5 cut(s)	233, 593, 683, 844, 1039
HpaII	CCGG	1 cut(s)	604
HphI	GGTGA	4 cut(s)	78, 935, 1048, 1057
Hpy166II	GTNNAC	3 cut(s)	145, 241, 321
Hpy188I	TCNGA	5 cut(s)	54, 232, 291, 426, 496
Hpy8I	GTNNAC	3 cut(s)	145, 241, 321
Hpy99I	CGWCG	2 cut(s)	130, 133
HpyAV	CCTTC	5 cut(s)	49, 673, 730, 913, 1010
HpyCH4III	ACNGT	2 cut(s)	207, 435
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	5 cut(s)	169, 334, 557, 797, 986
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	4 cut(s)	76, 384, 495, 618
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	4 cut(s)	268, 361, 812, 844
Kpn2I	TCCGGA	1 cut(s)	603
LmnI	GCTCC	4 cut(s)	192, 200, 551, 706
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	2 cut(s)	150, 806
MaeI	CTAG	2 cut(s)	324, 993
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	4 cut(s)	34, 220, 905, 1036
MboII	GAAGA	5 cut(s)	10, 13, 488, 706, 745
MflI	RGATCY	4 cut(s)	327, 366, 739, 968
MhlI	GDGCHC	1 cut(s)	197
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	9 cut(s)	13, 82, 185, 301, 510, 658, 885, 926, 1081
MluNI	TGGCCA	1 cut(s)	536
MlyI	GAGTC	3 cut(s)	227, 602, 1033
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	113, 173, 238, 861, 1020
Mox20I	TGGCCA	1 cut(s)	536
MroI	TCCGGA	1 cut(s)	603
MroXI	GAANNNNTTC	1 cut(s)	611
MscI	TGGCCA	1 cut(s)	536
MseI	TTAA	2 cut(s)	690, 929
MslI	CAYNNNNRTG	3 cut(s)	140, 218, 710
Msp20I	TGGCCA	1 cut(s)	536
MspA1I	CMGCKG	2 cut(s)	803, 1016
MspCI	CTTAAG	1 cut(s)	689
MspI	CCGG	1 cut(s)	604
MspR9I	CCNGG	2 cut(s)	108, 709
MvaI	CCWGG	2 cut(s)	108, 709
MwoI	GCNNNNNNNGC	1 cut(s)	224
NlaIII	CATG	4 cut(s)	268, 361, 812, 844
NlaIV	GGNNCC	3 cut(s)	147, 630, 741
NmuCI	GTSAC	4 cut(s)	34, 220, 905, 1036
OliI	CACNNNNGTG	1 cut(s)	218
PagI	TCATGA	1 cut(s)	840
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	2 cut(s)	683, 844
PkrI	GCNGC	2 cut(s)	11, 556
PleI	GAGTC	3 cut(s)	227, 601, 1033
PpsI	GAGTC	3 cut(s)	227, 601, 1033
Ppu21I	YACGTR	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	106, 707
PspGI	CCWGG	2 cut(s)	106, 707
PspN4I	GGNNCC	3 cut(s)	147, 630, 741
PspPI	GGNCC	3 cut(s)	110, 145, 629
PsrI	GAACNNNNNNTAC	2 cut(s)	260, 292
PsuI	RGATCY	4 cut(s)	327, 366, 739, 968
PvuII	CAGCTG	1 cut(s)	1016
RsaI	GTAC	8 cut(s)	242, 269, 356, 447, 600, 611, 807, 830
RsaNI	GTAC	8 cut(s)	241, 268, 355, 446, 599, 610, 806, 829
RseI	CAYNNNNRTG	3 cut(s)	140, 218, 710
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	690, 929
SatI	GCNGC	2 cut(s)	10, 555
Sau96I	GGNCC	3 cut(s)	110, 145, 629
ScaI	AGTACT	2 cut(s)	600, 611
SchI	GAGTC	3 cut(s)	227, 602, 1033
ScrFI	CCNGG	2 cut(s)	108, 709
SduI	GDGCHC	1 cut(s)	197
SfaNI	GCATC	2 cut(s)	150, 806
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	2 cut(s)	145, 629
SmiMI	CAYNNNNRTG	3 cut(s)	140, 218, 710
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	9 cut(s)	13, 82, 185, 301, 510, 658, 885, 926, 1081
SsiI	CCGC	3 cut(s)	9, 801, 989
SspMI	CTAG	2 cut(s)	324, 993
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	106, 707
TaaI	ACNGT	2 cut(s)	207, 435
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	176
TasI	AATT	9 cut(s)	13, 82, 185, 301, 510, 658, 885, 926, 1081
TatI	WGTACW	8 cut(s)	240, 267, 354, 445, 598, 609, 805, 828
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	683, 844
Tru1I	TTAA	2 cut(s)	690, 929
Tru9I	TTAA	2 cut(s)	690, 929
TscAI	CASTG	3 cut(s)	225, 260, 544
TseFI	GTSAC	4 cut(s)	34, 220, 905, 1036
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	4 cut(s)	34, 220, 905, 1036
TspDTI	ATGAA	7 cut(s)	728, 746, 829, 871, 878, 932, 1074
TspGWI	ACGGA	3 cut(s)	843, 915, 951
TspRI	CASTG	3 cut(s)	225, 260, 544
Vha464I	CTTAAG	1 cut(s)	689
VpaK11BI	GGWCC	2 cut(s)	145, 629
XapI	RAATTY	1 cut(s)	658
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 529
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	2 cut(s)	324, 993
ZrmI	AGTACT	2 cut(s)	600, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.