Rh6DG381500

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013842
Physical Location & Seq
Forward (+)
57574647 .. 57578140
3494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG381500.1

Sequence Viewer

Length: 1095 bp
ATGGGCTGCGGGAACTTCTTCTTCACCATTCTGGTGACCTTCTCCGTAGCTCTAATCACATACAACATAATCATCTCGGCCAATTCTCCACTCCAGCAAGACCTCCCCGGCCCCTCACGGTCGTCGTCTTCCTCGATTTCCGTGGACCCCATCATCAAGATGCCGACGGACCGATCGCGAGGGAAATCGGCGAGCTCCAAGCGACTGTTCCACACGGCGGTTACGGCCTCGGATTCTGTGTACAACACGTGGCAGACTCGGATCATGTACTACTGGTTCAAGAAGTTTCAGAACGAACCGGGTTCGGAAATGGGCGGGTTCACTAGGATCTTGCATTCCGGTAAGCCTGATAAGTATATGGATGAGATCCCTACCTTCGTTGCTCAGCCTTTGCCTGCTGGAATGGATCGGGGATATATAGTTCTCAATAGGCCATGGGCATTTGTACAATGGCTTCAGCAAGCAAACATCAAAGAAGATTATATACTGATGTCTGAGCCAGATCATATAATCGTCAAGCCCATACCGAACTTGGCAAGAGATGGGCTTGGAAGTGCATTTCCTTTCTTTTACATTGAACCTAAGAAGTATGAGACAATACTCCGGAAATACTACCCTGAGGACAAGGGACCAATAACTAACATTGATCCAATTGGAAACTCTCCCGTCATTGTTGGGAAGGAAGCTCTTAAGAAGATTGCCCCCACCTGGATGAATGTTTCTTTGGCAATGAAAAAGGATCCTGAAACAGACAAAGCTTTTGGCTGGGTGCTTGAAATGTATGCTTATGCAACAGCATCCGCTCTTCATGGTGTTGGTAATATCTTGTACAAGGACTTCATGCTTCAGCCTCCATGGGATACAGAAATTGGCAAGAAGTTCATAATTCATTACACTTATGGATGTGACTATAATATGAAGGGTGAATTAACGTATGGAAAGATTGGAGAATGGAGATTTGACAAAAGATCTTACGATAATGCTGCACCACCTAAAAATCTTCCTTTACCTCCACCTGGTGTCCCAGAAAGTGTGGTGACTCTGGTTAAAATGGTGAATGAAGCCACAGCAAACATTCCAAATTGGGGGTCATAA

Protein Analysis

364

Amino Acids

41.02

Weight (kDa)

8.73

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPAT PF23452 70 - 362 1.3e-127 Hydroxyproline O-arabinosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25265
fragaria_vesca FvH4_2g28340
malus_domestica MD08G1153200.v1.1 MD15G1130300.v1.1
prunus_persica Prupe.1G485800_v2.0.a1
pyrus_communis pycom08g13260 pycom15g11750
rosa_chinensis RchiOBHm_Chr6g0297261
rosa_laevigata RLG00000011616
rosa_multiflora Rmu_sc0004535.1_g000002 Rmu_sc0007115.1_g000001
rosa_roxburghii Rroxscaffold_7G00170700
rosa_rugosa Rorug06G0270100
rosa_samantha Rh6BG389600 Rh6CG394800 Rh6DG381500
rosa_wichuraiana Rw6G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 803
AccII CGCG 1 cut(s) 178
AccIII TCCGGA 1 cut(s) 603
AciI CCGC 4 cut(s) 9, 218, 315, 801
AclWI GGATC 7 cut(s) 269, 335, 361, 414, 641, 734, 747
AcoI YGGCCR 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 440, 830
AcvI CACGTG 1 cut(s) 249
AdeI CACNNNGTG 1 cut(s) 1019
AfaI GTAC 4 cut(s) 242, 269, 447, 830
AfiI CCNNNNNNNGG 4 cut(s) 217, 708, 1016, 1085
AflII CTTAAG 1 cut(s) 689
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 3 cut(s) 280, 578, 776
AjnI CCWGG 2 cut(s) 707, 1015
AjuI GAANNNNNNNTTGG 4 cut(s) 191, 223, 707, 739
AloI GAACNNNNNNTCC 2 cut(s) 405, 437
AluBI AGCT 4 cut(s) 50, 195, 686, 758
AluI AGCT 4 cut(s) 50, 195, 686, 758
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 7 cut(s) 269, 335, 361, 414, 641, 734, 747
Aor13HI TCCGGA 1 cut(s) 603
AoxI GGCC 4 cut(s) 78, 109, 225, 431
ApeKI GCWGC 2 cut(s) 6, 983
ArsI GACNNNNNNTTYG 3 cut(s) 743, 775, 1073
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 4 cut(s) 110, 145, 169, 629
AsuC2I CCSGG 2 cut(s) 108, 300
AsuHPI GGTGA 5 cut(s) 16, 46, 935, 1048, 1066
AvaII GGWCC 3 cut(s) 145, 169, 629
AxyI CCTNAGG 1 cut(s) 618
BamHI GGATCC 1 cut(s) 739
BanII GRGCYC 1 cut(s) 197
BarI GAAGNNNNNNTAC 6 cut(s) 438, 468, 470, 500, 821, 853
BbrPI CACGTG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 970
BccI CCATC 2 cut(s) 158, 536
BceAI ACGGC 2 cut(s) 231, 240
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 2 cut(s) 709, 1017
BciVI GTATCC 1 cut(s) 853
BcnI CCSGG 2 cut(s) 108, 300
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 689
BfuI GTATCC 1 cut(s) 853
BglII AGATCT 1 cut(s) 968
BisI GCNGC 2 cut(s) 7, 984
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 2 cut(s) 8, 985
Bme1390I CCNGG 4 cut(s) 108, 300, 709, 1017
Bme18I GGWCC 3 cut(s) 145, 169, 629
BmgT120I GGNCC 4 cut(s) 110, 145, 169, 629
BmiI GGNNCC 4 cut(s) 112, 147, 630, 741
BmrFI CCNGG 4 cut(s) 108, 300, 709, 1017
BmsI GCATC 2 cut(s) 150, 806
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 384
BpuMI CCSGG 2 cut(s) 108, 300
BsaAI YACGTR 1 cut(s) 249
BsaJI CCNNGG 5 cut(s) 106, 141, 228, 434, 854
BsaWI WCCGGW 2 cut(s) 338, 603
Bsc4I CCNNNNNNNGG 4 cut(s) 217, 708, 1016, 1085
Bse1I ACTGG 1 cut(s) 278
Bse21I CCTNAGG 1 cut(s) 618
Bse3DI GCAATG 1 cut(s) 735
BseAI TCCGGA 1 cut(s) 603
BseBI CCWGG 2 cut(s) 709, 1017
BseDI CCNNGG 5 cut(s) 106, 141, 228, 434, 854
BseGI GGATG 4 cut(s) 367, 717, 797, 908
BseLI CCNNNNNNNGG 4 cut(s) 217, 708, 1016, 1085
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 3 cut(s) 398, 486, 609
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 970
BseYI CCCAGC 1 cut(s) 765
BsgI GTGCAG 1 cut(s) 969
Bsh1236I CGCG 1 cut(s) 178
Bsh1285I CGRYCG 2 cut(s) 122, 176
BshFI GGCC 4 cut(s) 80, 111, 227, 433
BsiEI CGRYCG 2 cut(s) 122, 176
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 4 cut(s) 108, 299, 339, 604
BslFI GGGAC 2 cut(s) 642, 1007
BslI CCNNNNNNNGG 4 cut(s) 217, 708, 1016, 1085
BsmAI GTCTC 1 cut(s) 587
BsmFI GGGAC 2 cut(s) 642, 1007
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 4 cut(s) 80, 111, 227, 433
Bsp1286I GDGCHC 1 cut(s) 197
Bsp13I TCCGGA 1 cut(s) 603
Bsp1407I TGTACA 3 cut(s) 240, 445, 828
Bsp143I GATC 9 cut(s) 173, 261, 327, 366, 406, 502, 646, 739, 968
Bsp1720I GCTNAGC 1 cut(s) 384
Bsp19I CCATGG 2 cut(s) 434, 854
Bsp68I TCGCGA 1 cut(s) 178
BspACI CCGC 4 cut(s) 9, 218, 315, 801
BspANI GGCC 4 cut(s) 80, 111, 227, 433
BspCNI CTCAG 3 cut(s) 397, 487, 610
BspEI TCCGGA 1 cut(s) 603
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 4 cut(s) 112, 147, 630, 741
BspPI GGATC 7 cut(s) 269, 335, 361, 414, 641, 734, 747
BspQI GCTCTTC 1 cut(s) 810
BspTI CTTAAG 1 cut(s) 689
BsrBI CCGCTC 1 cut(s) 803
BsrDI GCAATG 1 cut(s) 735
BsrGI TGTACA 3 cut(s) 240, 445, 828
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 5 cut(s) 106, 141, 228, 434, 854
BssMI GATC 9 cut(s) 173, 261, 327, 366, 406, 502, 646, 739, 968
BssT1I CCWWGG 2 cut(s) 434, 854
Bst2UI CCWGG 2 cut(s) 709, 1017
Bst4CI ACNGT 2 cut(s) 120, 207
Bst6I CTCTTC 1 cut(s) 810
BstAFI CTTAAG 1 cut(s) 689
BstAUI TGTACA 3 cut(s) 240, 445, 828
BstBAI YACGTR 1 cut(s) 249
BstC8I GCNNGC 3 cut(s) 193, 396, 462
BstDEI CTNAG 4 cut(s) 384, 495, 582, 618
BstDSI CCRYGG 3 cut(s) 141, 434, 854
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 4 cut(s) 367, 717, 797, 908
BstFNI CGCG 1 cut(s) 178
BstKTI GATC 9 cut(s) 176, 264, 330, 369, 409, 505, 649, 742, 971
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 9 cut(s) 173, 261, 327, 366, 406, 502, 646, 739, 968
BstMCI CGRYCG 2 cut(s) 122, 176
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 2 cut(s) 709, 1017
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 4 cut(s) 106, 298, 707, 1015
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 970
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 4 cut(s) 327, 366, 739, 968
BstYI RGATCY 4 cut(s) 327, 366, 739, 968
Bsu36I CCTNAGG 1 cut(s) 618
BsuI GTATCC 1 cut(s) 853
BsuRI GGCC 4 cut(s) 80, 111, 227, 433
BtgI CCRYGG 3 cut(s) 141, 434, 854
BtsCI GGATG 4 cut(s) 367, 717, 797, 908
BtuMI TCGCGA 1 cut(s) 178
Cac8I GCNNGC 3 cut(s) 193, 396, 462
Cfr13I GGNCC 4 cut(s) 110, 145, 169, 629
CpoI CGGWCCG 1 cut(s) 169
CsiI ACCWGGT 1 cut(s) 1015
Csp6I GTAC 4 cut(s) 241, 268, 446, 829
CspI CGGWCCG 1 cut(s) 169
CviAII CATG 5 cut(s) 265, 435, 809, 841, 855
CviQI GTAC 4 cut(s) 241, 268, 446, 829
DdeI CTNAG 4 cut(s) 384, 495, 582, 618
DpnI GATC 9 cut(s) 175, 263, 329, 368, 408, 504, 648, 741, 970
DpnII GATC 9 cut(s) 173, 261, 327, 366, 406, 502, 646, 739, 968
DraIII CACNNNGTG 1 cut(s) 1019
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
Ecl136II GAGCTC 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 434, 854
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 3 cut(s) 145, 169, 629
Eco53kI GAGCTC 1 cut(s) 195
Eco57I CTGAAG 2 cut(s) 440, 830
Eco72I CACGTG 1 cut(s) 249
Eco81I CCTNAGG 1 cut(s) 618
Eco91I GGTNACC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 195
EcoO65I GGTNACC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 707, 1015
EcoT14I CCWWGG 2 cut(s) 434, 854
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 2 cut(s) 434, 854
FaeI CATG 5 cut(s) 268, 438, 812, 844, 858
FaqI GGGAC 2 cut(s) 642, 1007
FatI CATG 5 cut(s) 264, 434, 808, 840, 854
FauI CCCGC 2 cut(s) 2, 308
Fnu4HI GCNGC 2 cut(s) 7, 984
FokI GGATG 4 cut(s) 374, 724, 784, 915
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 7, 984
FspBI CTAG 1 cut(s) 324
GluI GCNGC 2 cut(s) 7, 984
GsaI CCCAGC 1 cut(s) 769
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 4 cut(s) 80, 111, 227, 433
HapII CCGG 4 cut(s) 108, 299, 339, 604
Hin1II CATG 5 cut(s) 268, 438, 812, 844, 858
HindIII AAGCTT 1 cut(s) 756
HinfI GANTC 3 cut(s) 233, 256, 1039
HpaII CCGG 4 cut(s) 108, 299, 339, 604
HphI GGTGA 5 cut(s) 16, 46, 935, 1048, 1066
Hpy166II GTNNAC 3 cut(s) 145, 241, 321
Hpy188I TCNGA 5 cut(s) 232, 261, 291, 307, 496
Hpy188III TCNNGA 5 cut(s) 157, 177, 280, 604, 743
Hpy8I GTNNAC 3 cut(s) 145, 241, 321
Hpy99I CGWCG 2 cut(s) 127, 169
HpyAV CCTTC 4 cut(s) 49, 385, 673, 913
HpyCH4III ACNGT 2 cut(s) 120, 207
HpyCH4IV ACGT 2 cut(s) 248, 932
HpyCH4V TGCA 4 cut(s) 334, 557, 791, 986
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 4 cut(s) 384, 495, 582, 618
HpySE526I ACGT 2 cut(s) 248, 932
Hsp92II CATG 5 cut(s) 268, 438, 812, 844, 858
Kpn2I TCCGGA 1 cut(s) 603
Kzo9I GATC 9 cut(s) 173, 261, 327, 366, 406, 502, 646, 739, 968
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 1 cut(s) 970
LweI GCATC 2 cut(s) 150, 806
MabI ACCWGGT 1 cut(s) 1015
MaeI CTAG 1 cut(s) 324
MaeII ACGT 2 cut(s) 248, 932
MaeIII GTNAC 4 cut(s) 34, 220, 905, 1036
MalI GATC 9 cut(s) 175, 263, 329, 368, 408, 504, 648, 741, 970
MbiI CCGCTC 1 cut(s) 803
MboI GATC 9 cut(s) 173, 261, 327, 366, 406, 502, 646, 739, 968
MboII GAAGA 7 cut(s) 10, 13, 120, 488, 706, 797, 992
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 4 cut(s) 327, 366, 739, 968
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 6 cut(s) 82, 651, 867, 885, 926, 1081
MlyI GAGTC 2 cut(s) 250, 1033
MnlI CCTC 8 cut(s) 113, 124, 142, 173, 238, 613, 861, 1020
MroI TCCGGA 1 cut(s) 603
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 3 cut(s) 690, 929, 1047
MslI CAYNNNNRTG 3 cut(s) 32, 158, 710
MspCI CTTAAG 1 cut(s) 689
MspI CCGG 4 cut(s) 108, 299, 339, 604
MspR9I CCNGG 4 cut(s) 108, 300, 709, 1017
MunI CAATTG 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 2 cut(s) 709, 1017
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 2 cut(s) 108, 300
NcoI CCATGG 2 cut(s) 434, 854
NdeII GATC 9 cut(s) 173, 261, 327, 366, 406, 502, 646, 739, 968
NlaIII CATG 5 cut(s) 268, 438, 812, 844, 858
NlaIV GGNNCC 4 cut(s) 112, 147, 630, 741
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 3 cut(s) 34, 905, 1036
NruI TCGCGA 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 810
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PctI GAATGC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 8, 985
Ple19I CGATCG 1 cut(s) 176
PleI GAGTC 2 cut(s) 250, 1033
PmaCI CACGTG 1 cut(s) 249
PmlI CACGTG 1 cut(s) 249
PpsI GAGTC 2 cut(s) 250, 1033
Ppu21I YACGTR 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 707, 1015
PspCI CACGTG 1 cut(s) 249
PspEI GGTNACC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 765
PspGI CCWGG 2 cut(s) 707, 1015
PspN4I GGNNCC 4 cut(s) 112, 147, 630, 741
PspPI GGNCC 4 cut(s) 110, 145, 169, 629
PsrI GAACNNNNNNTAC 2 cut(s) 260, 292
PsuI RGATCY 4 cut(s) 327, 366, 739, 968
PvuI CGATCG 1 cut(s) 176
RruI TCGCGA 1 cut(s) 178
RsaI GTAC 4 cut(s) 242, 269, 447, 830
RsaNI GTAC 4 cut(s) 241, 268, 446, 829
RseI CAYNNNNRTG 3 cut(s) 32, 158, 710
Rsr2I CGGWCCG 1 cut(s) 169
RsrII CGGWCCG 1 cut(s) 169
SacI GAGCTC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 3 cut(s) 690, 929, 1047
SatI GCNGC 2 cut(s) 7, 984
Sau3AI GATC 9 cut(s) 173, 261, 327, 366, 406, 502, 646, 739, 968
Sau96I GGNCC 4 cut(s) 110, 145, 169, 629
SchI GAGTC 2 cut(s) 250, 1033
ScrFI CCNGG 4 cut(s) 108, 300, 709, 1017
SduI GDGCHC 1 cut(s) 197
SexAI ACCWGGT 1 cut(s) 1015
SfaNI GCATC 2 cut(s) 150, 806
SinI GGWCC 3 cut(s) 145, 169, 629
SmiMI CAYNNNNRTG 3 cut(s) 32, 158, 710
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
Sse9I AATT 6 cut(s) 82, 651, 867, 885, 926, 1081
SsiI CCGC 4 cut(s) 9, 218, 315, 801
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 197
StyD4I CCNGG 4 cut(s) 106, 298, 707, 1015
StyI CCWWGG 2 cut(s) 434, 854
TaaI ACNGT 2 cut(s) 120, 207
TaiI ACGT 2 cut(s) 251, 935
TaqI TCGA 1 cut(s) 134
TaqII GACCGA 1 cut(s) 186
TasI AATT 6 cut(s) 82, 651, 867, 885, 926, 1081
TatI WGTACW 4 cut(s) 240, 267, 445, 828
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 3 cut(s) 690, 929, 1047
Tru9I TTAA 3 cut(s) 690, 929, 1047
TseFI GTSAC 3 cut(s) 34, 905, 1036
TseI GCWGC 2 cut(s) 6, 983
Tsp45I GTSAC 3 cut(s) 34, 905, 1036
TspDTI ATGAA 8 cut(s) 728, 746, 797, 829, 871, 878, 932, 1074
TspGWI ACGGA 3 cut(s) 34, 130, 182
Vha464I CTTAAG 1 cut(s) 689
VpaK11BI GGWCC 3 cut(s) 145, 169, 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.