Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0013842

Physical Location & Seq

Genomic Coordinates Reverse (-)

11874875 .. 11876818

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13260.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTACTACTGGTTCAAGAAGTTTCAGAACGAACCCGGCTCCGAGATGGGCGGGTTCACTAGGATCTTGCACAATGGGAAGCCGGACAAGTACATGGATGAAATCCCTACTTTTATTGCTCAGCCTTTGCCTTCTGGAATGGATCGGGGTTATATTGTTCTCAACCGACCATGGGCATTTGTGCAATGGCTTCAGCAAGCAGACATCAAAGAAGATTACATACTGATGTCAGAGCCCGATCATGTAATTGTCAAGCCAATACCGAACTTGTCTACTGATGGGCTTGGAGCTGCATTTCCTTTCTTCTACATTGAACCGAAAAAGTACGAGTCAGTCCTCCGGAAATACTTCCCTGAGGACAAGGGACCAATAACTAAAATTGATCCAATTGGAAATTCTCCTGTCATTGTTGGGAAGGAATCTCTCAAGAAAATTGCTCCCACGTGGATGAATGTTTCTTTGGCAATGAAGAAGGATCCTGAGACAGATAAAGCTTTTGGTTGGGTTCTTGAAATGTATGCTTATGCTGTTGCATCTGCTCACCATGGGGTTGGTAATATCTTATACAAGGACTTCATGCTTCAGCCTCCGTGGGATAAAAAAATTGGCAAGAAGTTCATAATTCATTACACTTATGGATGTGACTATAATATGAAGGGTGAACTAACATATGGGAAAATCGGAGAATGGAGATTTGATAAAAGGTCTTATGATACTGTCGCACCGCCTAGAAACCTTACTATGCCTCCACATGGTGTTCCAGAAAGCGTGGTGACCCTGGTGAAAATGGTGAATGAAGCCACAGCAAACATTCCAAAGTGGGGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

31.64

Weight (kDa)

8.33

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25265
fragaria_vesca	FvH4_2g28340
malus_domestica	MD08G1153200.v1.1 MD15G1130300.v1.1
prunus_persica	Prupe.1G485800_v2.0.a1
pyrus_communis	pycom08g13260 pycom15g11750
rosa_chinensis	RchiOBHm_Chr6g0297261
rosa_laevigata	RLG00000011616
rosa_multiflora	Rmu_sc0004535.1_g000002 Rmu_sc0007115.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170700
rosa_rugosa	Rorug06G0270100
rosa_samantha	Rh6BG389600 Rh6CG394800 Rh6DG381500
rosa_wichuraiana	Rw6G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	272
AccIII	TCCGGA	1 cut(s)	339
AciI	CCGC	2 cut(s)	51, 725
AclWI	GGATC	5 cut(s)	71, 150, 377, 470, 483
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	2 cut(s)	176, 566
AcvI	CACGTG	1 cut(s)	444
AdeI	CACNNNGTG	1 cut(s)	755
AfaI	GTAC	3 cut(s)	5, 92, 326
AfiI	CCNNNNNNNGG	3 cut(s)	172, 752, 821
AgsI	TTSAA	3 cut(s)	16, 314, 512
AjnI	CCWGG	1 cut(s)	777
AjuI	GAANNNNNNNTTGG	4 cut(s)	379, 411, 443, 475
AluBI	AGCT	2 cut(s)	290, 494
AluI	AGCT	2 cut(s)	290, 494
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	5 cut(s)	71, 150, 377, 470, 483
Aor13HI	TCCGGA	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	394
Asp700I	GAANNNNTTC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	5 cut(s)	533, 671, 784, 793, 802
AvaII	GGWCC	1 cut(s)	365
AxyI	CCTNAGG	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BbrPI	CACGTG	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	2 cut(s)	40, 272
BciT130I	CCWGG	1 cut(s)	779
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	2 cut(s)	60, 729
BisI	GCNGC	1 cut(s)	291
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	36, 779
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	3 cut(s)	40, 366, 477
BmrFI	CCNGG	2 cut(s)	36, 779
BmsI	GCATC	1 cut(s)	542
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	444
BsaJI	CCNNGG	4 cut(s)	170, 544, 590, 777
BsaWI	WCCGGW	1 cut(s)	339
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 752, 821
Bse1I	ACTGG	1 cut(s)	14
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	191, 471
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	4 cut(s)	170, 544, 590, 777
BseGI	GGATG	3 cut(s)	103, 453, 644
BseLI	CCNNNNNNNGG	3 cut(s)	172, 752, 821
BseMI	GCAATG	2 cut(s)	191, 471
BseMII	CTCAG	3 cut(s)	134, 345, 471
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	36, 83, 340
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	3 cut(s)	172, 752, 821
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	339
Bsp143I	GATC	5 cut(s)	63, 142, 238, 382, 475
Bsp1720I	GCTNAGC	1 cut(s)	120
Bsp19I	CCATGG	2 cut(s)	170, 544
BspACI	CCGC	2 cut(s)	51, 725
BspCNI	CTCAG	3 cut(s)	133, 346, 472
BspEI	TCCGGA	1 cut(s)	339
BspLI	GGNNCC	3 cut(s)	40, 366, 477
BspPI	GGATC	5 cut(s)	71, 150, 377, 470, 483
BsrDI	GCAATG	2 cut(s)	191, 471
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	4 cut(s)	170, 544, 590, 777
BssMI	GATC	5 cut(s)	63, 142, 238, 382, 475
BssT1I	CCWWGG	2 cut(s)	170, 544
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	1 cut(s)	718
BstBAI	YACGTR	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	120, 354, 480
BstDSI	CCRYGG	3 cut(s)	170, 544, 590
BstEII	GGTNACC	1 cut(s)	772
BstF5I	GGATG	3 cut(s)	103, 453, 644
BstKTI	GATC	5 cut(s)	66, 145, 241, 385, 478
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	5 cut(s)	63, 142, 238, 382, 475
BstNI	CCWGG	1 cut(s)	779
BstPI	GGTNACC	1 cut(s)	772
BstSCI	CCNGG	2 cut(s)	34, 777
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	2 cut(s)	63, 475
BstXI	CCANNNNNNTGG	1 cut(s)	551
BstYI	RGATCY	2 cut(s)	63, 475
Bsu36I	CCTNAGG	1 cut(s)	354
BtgI	CCRYGG	3 cut(s)	170, 544, 590
BtsCI	GGATG	3 cut(s)	103, 453, 644
Cac8I	GCNNGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	3 cut(s)	4, 91, 325
CviAII	CATG	6 cut(s)	94, 171, 242, 545, 577, 752
CviQI	GTAC	3 cut(s)	4, 91, 325
DdeI	CTNAG	3 cut(s)	120, 354, 480
DpnI	GATC	5 cut(s)	65, 144, 240, 384, 477
DpnII	GATC	5 cut(s)	63, 142, 238, 382, 475
DraIII	CACNNNGTG	1 cut(s)	755
Eco130I	CCWWGG	2 cut(s)	170, 544
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	2 cut(s)	176, 566
Eco72I	CACGTG	1 cut(s)	444
Eco81I	CCTNAGG	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	772
EcoO65I	GGTNACC	1 cut(s)	772
EcoRII	CCWGG	1 cut(s)	777
EcoT14I	CCWWGG	2 cut(s)	170, 544
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	170, 544
FaeI	CATG	6 cut(s)	97, 174, 245, 548, 580, 755
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	6 cut(s)	93, 170, 241, 544, 576, 751
FauI	CCCGC	1 cut(s)	44
FauNDI	CATATG	1 cut(s)	670
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	3 cut(s)	110, 460, 651
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	2 cut(s)	60, 729
GluI	GCNGC	1 cut(s)	291
HapII	CCGG	3 cut(s)	36, 83, 340
Hin1II	CATG	6 cut(s)	97, 174, 245, 548, 580, 755
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	2 cut(s)	329, 419
HpaII	CCGG	3 cut(s)	36, 83, 340
HphI	GGTGA	5 cut(s)	533, 671, 784, 793, 802
Hpy166II	GTNNAC	3 cut(s)	57, 273, 662
Hpy188I	TCNGA	4 cut(s)	27, 43, 232, 683
Hpy188III	TCNNGA	7 cut(s)	16, 135, 340, 427, 479, 509, 761
Hpy8I	GTNNAC	3 cut(s)	57, 273, 662
HpyAV	CCTTC	4 cut(s)	141, 409, 466, 649
HpyCH4III	ACNGT	1 cut(s)	718
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	4 cut(s)	70, 184, 293, 533
HpyF3I	CTNAG	3 cut(s)	120, 354, 480
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	6 cut(s)	97, 174, 245, 548, 580, 755
Kpn2I	TCCGGA	1 cut(s)	339
Kzo9I	GATC	5 cut(s)	63, 142, 238, 382, 475
LmnI	GCTCC	3 cut(s)	44, 287, 442
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	2 cut(s)	60, 729
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	2 cut(s)	641, 772
MalI	GATC	5 cut(s)	65, 144, 240, 384, 477
MboI	GATC	5 cut(s)	63, 142, 238, 382, 475
MboII	GAAGA	3 cut(s)	224, 295, 481
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	2 cut(s)	63, 475
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	7 cut(s)	246, 378, 387, 394, 432, 603, 621
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	4 cut(s)	347, 349, 597, 756
MroI	TCCGGA	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	347
MslI	CAYNNNNRTG	2 cut(s)	224, 446
MspI	CCGG	3 cut(s)	36, 83, 340
MspR9I	CCNGG	2 cut(s)	36, 779
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	779
NciI	CCSGG	1 cut(s)	36
NcoI	CCATGG	2 cut(s)	170, 544
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	5 cut(s)	63, 142, 238, 382, 475
NlaIII	CATG	6 cut(s)	97, 174, 245, 548, 580, 755
NlaIV	GGNNCC	3 cut(s)	40, 366, 477
NmuCI	GTSAC	2 cut(s)	641, 772
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	337
PmaCI	CACGTG	1 cut(s)	444
PmlI	CACGTG	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	777
PspCI	CACGTG	1 cut(s)	444
PspEI	GGTNACC	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	3 cut(s)	40, 366, 477
PspPI	GGNCC	1 cut(s)	365
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	63, 475
RsaI	GTAC	3 cut(s)	5, 92, 326
RsaNI	GTAC	3 cut(s)	4, 91, 325
RseI	CAYNNNNRTG	2 cut(s)	224, 446
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	5 cut(s)	63, 142, 238, 382, 475
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	2 cut(s)	36, 779
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	5 cut(s)	292, 446, 496, 707, 738
SfaNI	GCATC	1 cut(s)	542
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	2 cut(s)	224, 446
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	7 cut(s)	246, 378, 387, 394, 432, 603, 621
SsiI	CCGC	2 cut(s)	51, 725
SspMI	CTAG	2 cut(s)	60, 729
StyD4I	CCNGG	2 cut(s)	34, 777
StyI	CCWWGG	2 cut(s)	170, 544
TaaI	ACNGT	1 cut(s)	718
TaiI	ACGT	1 cut(s)	446
TasI	AATT	7 cut(s)	246, 378, 387, 394, 432, 603, 621
TatI	WGTACW	2 cut(s)	3, 90
TfiI	GAWTC	1 cut(s)	419
TseFI	GTSAC	2 cut(s)	641, 772
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	2 cut(s)	641, 772
TspDTI	ATGAA	8 cut(s)	114, 464, 482, 565, 607, 614, 668, 810
TspGWI	ACGGA	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	2 cut(s)	60, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.