AT5G25570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006779
Physical Location & Seq
Forward (+)
8901740 .. 8903219
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G25570.3

Sequence Viewer

Length: 300 bp
ATGGCGGAATCACCATCGCAGAGTGATGCACAGCTTGTTGCTCATCAATCTCCTGGTCAGCAAGCTGATTCGGATCTGACGTCTCTCGTCTTCGAAATGTCACAGCAAGTTCAGATGGGGATGGAGAATATGCTCAAGATGGTTTATGAAATCGATCAAAACTCGGTTGGAATCAAGGAAGAGATTGAGAAATCAAAGGATTTTGCTATGGAGAAGAAAAGGATCCTCGAGGAAGAGAAAGACCAGTTTCAGAAAGCTGCTTACACTATTCTAGACATGCTAAGCAACAGCCGAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.22

Weight (kDa)

4.51

Isoelectric Point (pI)

66.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 83
AbsI CCTCGAGG 1 cut(s) 227
AciI CCGC 1 cut(s) 5
AclWI GGATC 3 cut(s) 81, 217, 230
AcyI GRCGYC 1 cut(s) 80
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 3 cut(s) 34, 65, 257
AluI AGCT 3 cut(s) 34, 65, 257
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 3 cut(s) 81, 217, 230
Ama87I CYCGRG 1 cut(s) 227
ApeKI GCWGC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 3
AsuII TTCGAA 1 cut(s) 93
AvaI CYCGRG 1 cut(s) 227
BamHI GGATCC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 244
BccI CCATC 4 cut(s) 22, 109, 115, 133
BciT130I CCWGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 1 cut(s) 272
BisI GCNGC 1 cut(s) 258
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 82
Bpu1102I GCTNAGC 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 119
Bsa29I ATCGAT 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 1 cut(s) 54
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 72
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 244
BshVI ATCGAT 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 227
Bsp119I TTCGAA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 73, 154, 222
Bsp1720I GCTNAGC 1 cut(s) 281
BspACI CCGC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 224
BspPI GGATC 3 cut(s) 81, 217, 230
BspT104I TTCGAA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 3 cut(s) 73, 154, 222
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 54
Bst6I CTCTTC 2 cut(s) 174, 228
BstACI GRCGYC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 3 cut(s) 76, 157, 225
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 3 cut(s) 73, 154, 222
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 2 cut(s) 73, 222
BstYI RGATCY 2 cut(s) 73, 222
Bsu15I ATCGAT 1 cut(s) 153
BsuTUI ATCGAT 1 cut(s) 153
BtsCI GGATG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 63
ClaI ATCGAT 1 cut(s) 153
CviAII CATG 1 cut(s) 277
CviJI RGCY 5 cut(s) 34, 65, 257, 291, 297
CviKI_1 RGCY 5 cut(s) 34, 65, 257, 291, 297
DdeI CTNAG 1 cut(s) 281
DpnI GATC 3 cut(s) 75, 156, 224
DpnII GATC 3 cut(s) 73, 154, 222
Eam1104I CTCTTC 2 cut(s) 174, 228
EarI CTCTTC 2 cut(s) 174, 228
EciI GGCGGA 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 1 cut(s) 280
FaiI YATR 4 cut(s) 131, 147, 209, 278
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 272
GluI GCNGC 1 cut(s) 258
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 1 cut(s) 280
HinfI GANTC 3 cut(s) 8, 68, 171
HphI GGTGA 1 cut(s) 3
Hpy188I TCNGA 4 cut(s) 73, 78, 114, 252
Hpy188III TCNNGA 2 cut(s) 136, 272
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 1 cut(s) 280
Kzo9I GATC 3 cut(s) 73, 154, 222
LpnPI CCDG 3 cut(s) 39, 66, 257
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 99
MalI GATC 3 cut(s) 75, 156, 224
MboI GATC 3 cut(s) 73, 154, 222
MboII GAAGA 4 cut(s) 82, 191, 226, 245
MflI RGATCY 2 cut(s) 73, 222
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 3 cut(s) 223, 236, 287
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
NdeII GATC 3 cut(s) 73, 154, 222
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 224
NmuCI GTSAC 1 cut(s) 99
NspI RCATGY 1 cut(s) 280
NspV TTCGAA 1 cut(s) 93
PaeR7I CTCGAG 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PfeI GAWTC 3 cut(s) 8, 68, 171
PkrI GCNGC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 227
PsuI RGATCY 2 cut(s) 73, 222
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 3 cut(s) 73, 154, 222
ScrFI CCNGG 1 cut(s) 54
SetI ASST 4 cut(s) 36, 67, 83, 259
SfaNI GCATC 1 cut(s) 16
Sfr274I CTCGAG 1 cut(s) 227
SfuI TTCGAA 1 cut(s) 93
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 2 cut(s) 134, 227
SmoI CTYRAG 2 cut(s) 134, 227
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 52
TaiI ACGT 1 cut(s) 83
TaqI TCGA 3 cut(s) 93, 153, 228
TfiI GAWTC 3 cut(s) 8, 68, 171
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 162
XbaI TCTAGA 1 cut(s) 271
XceI RCATGY 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 227
XspI CTAG 1 cut(s) 272
ZraI GACGTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.