RLG00000030131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006779
Physical Location & Seq
Forward (+)
55959971 .. 56038281
78311 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030131

Sequence Viewer

Length: 357 bp
ATGGCTGCCTCACCGCCTCAGTCCGATGCTCAGCTGACTCTCCTCCCTCCTCCTCCTCCGCCGGAATCCGACTCTCAGATCTCATCCCTCCTTTACGAGATTTCGCAACAAGTTCAAGCAGAAATGGAGGACATGCTCAAGTCGATCAGGGAAATTGATGAAAACTCTGCTCAGATAAATGAAGAGATTGACAAGTGCAAGGACTCTGCGCTCGAGAAGAAGAGAGGCTTAGACGAAACCAAAGAACAAGTCGAGAAAGCTGCTAGCTTATGCCGTTTTGTAGATGCTCAACAACAGAGCATAGCTATAAAGAAGAAGCAGGTAGGGACTGGCGAGTCAATTAGTAGTACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.98

Weight (kDa)

4.53

Isoelectric Point (pI)

62.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 334
Acc36I ACCTGC 1 cut(s) 310
AciI CCGC 2 cut(s) 14, 59
AfaI GTAC 1 cut(s) 349
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 4 cut(s) 34, 260, 267, 305
AluI AGCT 4 cut(s) 34, 260, 267, 305
Ama87I CYCGRG 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 5, 260
ArsI GACNNNNNNTTYG 2 cut(s) 234, 266
AspLEI GCGC 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 3
AsuNHI GCTAGC 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 212
BbvI GCAGC 1 cut(s) 247
BceAI ACGGC 1 cut(s) 258
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BfaI CTAG 1 cut(s) 264
BfuAI ACCTGC 1 cut(s) 310
BglII AGATCT 1 cut(s) 78
BisI GCNGC 2 cut(s) 6, 261
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 2 cut(s) 7, 262
BmcAI AGTACT 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 212
BmsI GCATC 2 cut(s) 16, 274
BmtI GCTAGC 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 334
BseGI GGATG 1 cut(s) 83
BseMII CTCAG 5 cut(s) 32, 44, 89, 185, 342
BseNI ACTGG 1 cut(s) 334
BseRI GAGGAG 4 cut(s) 32, 39, 42, 45
BseXI GCAGC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 212
Bsp143I GATC 2 cut(s) 78, 144
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 2 cut(s) 14, 59
BspCNI CTCAG 5 cut(s) 31, 43, 88, 184, 343
BspMI ACCTGC 1 cut(s) 310
BspOI GCTAGC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 334
BssMI GATC 2 cut(s) 78, 144
Bst6I CTCTTC 2 cut(s) 177, 215
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 6 cut(s) 18, 30, 75, 171, 229, 351
BstF5I GGATG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 2 cut(s) 81, 147
BstMBI GATC 2 cut(s) 78, 144
BstNSI RCATGY 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BtsCI GGATG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 348
CviAII CATG 1 cut(s) 133
CviJI RGCY 6 cut(s) 5, 34, 228, 260, 267, 305
CviKI_1 RGCY 6 cut(s) 5, 34, 228, 260, 267, 305
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 6 cut(s) 18, 30, 75, 171, 229, 351
DpnI GATC 2 cut(s) 80, 146
DpnII GATC 2 cut(s) 78, 144
DrdI GACNNNNNNGTC 1 cut(s) 334
DseDI GACNNNNNNGTC 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 177, 215
EarI CTCTTC 2 cut(s) 177, 215
EciI GGCGGA 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 212
FaeI CATG 1 cut(s) 136
FaiI YATR 4 cut(s) 134, 271, 302, 308
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 1 cut(s) 340
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 6, 261
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 6, 261
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 210
GluI GCNGC 2 cut(s) 6, 261
HapII CCGG 1 cut(s) 62
HhaI GCGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 5 cut(s) 37, 65, 71, 203, 335
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 3
Hpy188I TCNGA 4 cut(s) 25, 70, 78, 174
Hpy188III TCNNGA 2 cut(s) 214, 253
HpyCH4V TGCA 1 cut(s) 198
HpyF3I CTNAG 6 cut(s) 18, 30, 75, 171, 229, 351
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 1 cut(s) 209
Kzo9I GATC 2 cut(s) 78, 144
LpnPI CCDG 4 cut(s) 75, 133, 305, 315
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 2 cut(s) 16, 274
MaeI CTAG 1 cut(s) 264
MalI GATC 2 cut(s) 80, 146
MboI GATC 2 cut(s) 78, 144
MboII GAAGA 4 cut(s) 194, 229, 232, 325
MflI RGATCY 1 cut(s) 78
MluCI AATT 2 cut(s) 153, 339
MlyI GAGTC 4 cut(s) 31, 65, 197, 344
MmeI TCCRAC 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 62
NdeII GATC 2 cut(s) 78, 144
NheI GCTAGC 1 cut(s) 263
NlaIII CATG 1 cut(s) 136
NspI RCATGY 1 cut(s) 136
PaeR7I CTCGAG 1 cut(s) 212
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 7, 262
PleI GAGTC 4 cut(s) 31, 65, 197, 343
PpsI GAGTC 4 cut(s) 31, 65, 197, 343
PsuI RGATCY 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SatI GCNGC 2 cut(s) 6, 261
Sau3AI GATC 2 cut(s) 78, 144
ScaI AGTACT 1 cut(s) 349
SchI GAGTC 4 cut(s) 31, 65, 197, 344
SetI ASST 5 cut(s) 36, 262, 269, 307, 324
SfaNI GCATC 2 cut(s) 16, 274
Sfr274I CTCGAG 1 cut(s) 212
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 2 cut(s) 137, 212
SmoI CTYRAG 2 cut(s) 137, 212
Sse9I AATT 2 cut(s) 153, 339
SsiI CCGC 2 cut(s) 14, 59
SspMI CTAG 1 cut(s) 264
TaqI TCGA 3 cut(s) 143, 213, 252
TasI AATT 2 cut(s) 153, 339
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 1 cut(s) 65
TseI GCWGC 2 cut(s) 5, 260
TspDTI ATGAA 2 cut(s) 174, 195
XceI RCATGY 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 212
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.