Prupe.1G464700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006779
Physical Location & Seq
Reverse (-)
38780569 .. 38781291
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G464700.1

Sequence Viewer

Length: 288 bp
ATGGCGTCTTCTTCACCATCGCAGCCGGATCTTCAGCTCCAACTTCAACCGGAGACCGAGTCTCAGATGTCATCTATCGTCTACGAGATTTCACAAGAAGTCCAGGGCGCAATGGAGAACATGTTGAAGATGATGAGCGAAATTGATGAGAACTCTGCCGGAATAACCGAAGAGATAGAGAAGTGCAAAGAGCAGAGTCTTGAGAAGAAGAGAGGCTTGGAGGAAGCCAAAGAACAAGTTGAGAAAGCTGCTTATGCCGTTCTAGAGATGCTCAATAACAGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.67

Weight (kDa)

4.38

Isoelectric Point (pI)

93.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AclWI GGATC 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 2 cut(s) 47, 127
AjnI CCWGG 1 cut(s) 102
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 2 cut(s) 37, 248
AluI AGCT 2 cut(s) 37, 248
Alw26I GTCTC 2 cut(s) 47, 66
AlwI GGATC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 22, 248
AspLEI GCGC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 6
BbvI GCAGC 2 cut(s) 34, 235
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 2 cut(s) 47, 66
BfaI CTAG 1 cut(s) 263
BisI GCNGC 2 cut(s) 23, 249
BlsI GCNGC 2 cut(s) 24, 250
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 107, 137
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 34, 235
BsiSI CCGG 3 cut(s) 26, 50, 159
BsmAI GTCTC 2 cut(s) 47, 66
Bso31I GGTCTC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 76
BspPI GGATC 1 cut(s) 36
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 28
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 104
Bst6I CTCTTC 2 cut(s) 165, 203
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 2 cut(s) 47, 66
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 34, 235
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 3
CfoI GCGC 1 cut(s) 110
CviAII CATG 1 cut(s) 121
CviJI RGCY 5 cut(s) 25, 37, 216, 227, 248
CviKI_1 RGCY 5 cut(s) 25, 37, 216, 227, 248
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 165, 203
EarI CTCTTC 2 cut(s) 165, 203
Eco31I GGTCTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 102
FaeI CATG 1 cut(s) 124
FaiI YATR 3 cut(s) 122, 255, 286
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FatI CATG 1 cut(s) 120
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 23, 249
Fsp4HI GCNGC 2 cut(s) 23, 249
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 23, 249
HapII CCGG 3 cut(s) 26, 50, 159
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 2 cut(s) 59, 196
HpaII CCGG 3 cut(s) 26, 50, 159
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 2 cut(s) 200, 263
Hpy8I GTNNAC 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 39, 63, 89, 116, 172
Lsp1109I GCAGC 2 cut(s) 34, 235
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 263
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 6 cut(s) 3, 23, 139, 182, 217, 220
MflI RGATCY 1 cut(s) 28
MluCI AATT 1 cut(s) 141
MlyI GAGTC 2 cut(s) 68, 205
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 206, 214
MspI CCGG 3 cut(s) 26, 50, 159
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 124
NspI RCATGY 1 cut(s) 124
PciI ACATGT 1 cut(s) 120
PflFI GACNNNGTC 1 cut(s) 58
PkrI GCNGC 2 cut(s) 24, 250
PleI GAGTC 2 cut(s) 67, 204
PpsI GAGTC 2 cut(s) 67, 204
PscI ACATGT 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PsuI RGATCY 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 58
SatI GCNGC 2 cut(s) 23, 249
Sau3AI GATC 1 cut(s) 28
SchI GAGTC 2 cut(s) 68, 205
ScrFI CCNGG 1 cut(s) 104
SetI ASST 2 cut(s) 39, 250
SfaNI GCATC 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 1 cut(s) 141
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 102
TaqII GACCGA 1 cut(s) 71
TasI AATT 1 cut(s) 141
TseI GCWGC 2 cut(s) 22, 248
Tth111I GACNNNGTC 1 cut(s) 58
XbaI TCTAGA 1 cut(s) 262
XceI RCATGY 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.