Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006779

Physical Location & Seq

Genomic Coordinates Reverse (-)

31553331 .. 31567168

Gene Structure 13838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG151000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCTGCCTCACCGCCTCAGTTCGATGCTCAGCTGACTCTCCTCCCTCATCCTCCACCGGAATCCGACTCTCAGATCTCATCCCTCCTTTACAAGATTTCGCAACAAGTTCAAGTAGAAATGGAGGACATGCTCAAGTCAATCAGGGAAATTGATGAAAACTCTTCTCAGATAACGGAGGAGATTGACGATTTTGGATCAGTCAAAGTTCAAGCTCTTTCGACTCGTCTTCCTGATACTGAAGCATATCGTATGGGACTGCCCACATGTGTTGCCATGGAGGCATGGACAATGTTGTCTGTCTCCATACTTGGACCCAAAAAAATACTCGCTCTTTTACAGAGGGCGTCAAGGCTGACCGTGCTTCCATTCCTATCAATATATAGTCAACTCCATTTTCTCAGTTTCTCTCGAAAAGTCCAAACCTTTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.16

Weight (kDa)

5.1

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25570 AT5G25570 AT5G25570
fragaria_vesca	FvH4_7g03290 FvH4_7g03290 FvH4_7g03290
malus_domestica	MD08G1134800.v1.1
prunus_persica	Prupe.1G464700_v2.0.a1 Prupe.1G464700_v2.0.a1 Prupe.3G140100_v2.0.a1 Prupe.3G140100_v2.0.a1 Prupe.3G140100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0325561
rosa_laevigata	RLG00000030131
rosa_multiflora	Rmu_sc0001986.1_g000027 Rmu_sc0006722.1_g000016 Rmu_sc0032271.1_g000001 Rmu_ssc0000267.1_g000002
rosa_roxburghii	Rroxscaffold_4G00324660
rosa_rugosa	Rorug01G0052800
rosa_samantha	Rh1AG068600 Rh1BG056000 Rh1CG068900 Rh1DG073700 Rh1DG151000
rosa_wichuraiana	Rw1G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	295
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	113, 212
AluBI	AGCT	2 cut(s)	34, 215
AluI	AGCT	2 cut(s)	34, 215
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	3
AvaII	GGWCC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	307
BglI	GCCNNNNNGGC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	316
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	49, 80
BseMII	CTCAG	5 cut(s)	32, 44, 86, 182, 415
BseRI	GAGGAG	2 cut(s)	32, 194
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	270
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	75, 197
Bsp1720I	GCTNAGC	1 cut(s)	30
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	1 cut(s)	14
BspCNI	CTCAG	5 cut(s)	31, 43, 85, 181, 414
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	2 cut(s)	75, 197
BssNI	GRCGYC	1 cut(s)	347
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	347
BstDEI	CTNAG	5 cut(s)	18, 30, 72, 168, 401
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	49, 80
BstKTI	GATC	2 cut(s)	78, 200
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	2 cut(s)	75, 197
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 361
BstNSI	RCATGY	2 cut(s)	133, 270
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	49, 80
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	1 cut(s)	336
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	4 cut(s)	130, 267, 277, 285
CviJI	RGCY	4 cut(s)	5, 34, 215, 355
CviKI_1	RGCY	4 cut(s)	5, 34, 215, 355
DdeI	CTNAG	5 cut(s)	18, 30, 72, 168, 401
DpnI	GATC	2 cut(s)	77, 199
DpnII	GATC	2 cut(s)	75, 197
DrdI	GACNNNNNNGTC	1 cut(s)	295
DseDI	GACNNNNNNGTC	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	4 cut(s)	133, 270, 280, 288
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	4 cut(s)	129, 266, 276, 284
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	36, 67
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	336
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	4 cut(s)	133, 270, 280, 288
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HinfI	GANTC	4 cut(s)	37, 62, 68, 223
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	3
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	3 cut(s)	67, 75, 171
Hpy188III	TCNNGA	2 cut(s)	233, 411
Hpy8I	GTNNAC	1 cut(s)	389
HpyCH4III	ACNGT	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 361
HpyF3I	CTNAG	5 cut(s)	18, 30, 72, 168, 401
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	4 cut(s)	133, 270, 280, 288
Kzo9I	GATC	2 cut(s)	75, 197
LpnPI	CCDG	3 cut(s)	72, 130, 246
LweI	GCATC	1 cut(s)	16
MalI	GATC	2 cut(s)	77, 199
MboI	GATC	2 cut(s)	75, 197
MboII	GAAGA	2 cut(s)	156, 221
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	3 cut(s)	31, 62, 217
MmeI	TCCRAC	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	281, 361
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	75, 197
NlaIII	CATG	4 cut(s)	133, 270, 280, 288
NlaIV	GGNNCC	1 cut(s)	316
NspI	RCATGY	2 cut(s)	133, 270
PciI	ACATGT	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	31, 62, 217
PpsI	GAGTC	3 cut(s)	31, 62, 217
PscI	ACATGT	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	34
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	75, 197
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	3 cut(s)	31, 62, 217
SetI	ASST	3 cut(s)	36, 217, 428
SfaNI	GCATC	1 cut(s)	16
SinI	GGWCC	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	3 cut(s)	24, 221, 412
TasI	AATT	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	314
XceI	RCATGY	2 cut(s)	133, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.