FvH4_7g03290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006779
Physical Location & Seq
Reverse (-)
3619213 .. 3622184
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03290.t1

Sequence Viewer

Length: 372 bp
ATGAGAGAAGAGAGACGTTGCATTTCTGATTTGGCAAAGCTACATTTCACAAAACAAACACACAATCAGCGAGCCATGGCCGCTTCACCGTCTCAGTCCGATGCTCAGCCTGCTCTCCTCGCTCCTCCACCGGAATCCGAGTCTCAGATCTCTTCCCTCCTTTACGAGATTTCGCAACAAGTCCAAGCAGAAATGGAGGACATGCTCAAGTCGATCAGGGAAATTGATGAAAACTCAGGTCAGATTACGGAGGAGATTGACAAGTGCAAGGAGTCTGCGCTGGAGAAGAAGAGAGGCTTAGAGGAATCCAAAGAACAAGTCGAGAAAGCTGCTTATGCCGTTCTGCAGATGCTCAACAACTCCATACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.87

Weight (kDa)

4.89

Isoelectric Point (pI)

70.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AcoI YGGCCR 1 cut(s) 78
AluBI AGCT 2 cut(s) 40, 329
AluI AGCT 2 cut(s) 40, 329
Alw26I GTCTC 3 cut(s) 7, 96, 147
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 329
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
AspLEI GCGC 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 78
BbvI GCAGC 1 cut(s) 316
BceAI ACGGC 1 cut(s) 323
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BcoDI GTCTC 3 cut(s) 7, 96, 147
BfmI CTRYAG 1 cut(s) 344
BglII AGATCT 1 cut(s) 147
BisI GCNGC 2 cut(s) 81, 330
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 2 cut(s) 82, 331
BmsI GCATC 2 cut(s) 91, 339
BpmI CTGGAG 1 cut(s) 302
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 75
BseMII CTCAG 4 cut(s) 107, 119, 158, 249
BseRI GAGGAG 3 cut(s) 107, 114, 266
BseXI GCAGC 1 cut(s) 316
BshFI GGCC 1 cut(s) 80
BsiSI CCGG 1 cut(s) 131
BsmAI GTCTC 3 cut(s) 7, 96, 147
BsmBI CGTCTC 2 cut(s) 7, 96
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 2 cut(s) 147, 213
Bsp1720I GCTNAGC 1 cut(s) 105
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 4 cut(s) 106, 118, 157, 248
BspMAI CTGCAG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 147, 213
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 90, 369
Bst6I CTCTTC 3 cut(s) 3, 157, 284
BstC8I GCNNGC 2 cut(s) 72, 111
BstDEI CTNAG 5 cut(s) 93, 105, 144, 235, 298
BstDSI CCRYGG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 2 cut(s) 150, 216
BstMAI GTCTC 3 cut(s) 7, 96, 147
BstMBI GATC 2 cut(s) 147, 213
BstMWI GCNNNNNNNGC 4 cut(s) 80, 110, 119, 335
BstNSI RCATGY 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 72, 111
CfoI GCGC 1 cut(s) 280
CviAII CATG 2 cut(s) 76, 202
CviJI RGCY 6 cut(s) 40, 74, 80, 109, 297, 329
CviKI_1 RGCY 6 cut(s) 40, 74, 80, 109, 297, 329
DdeI CTNAG 5 cut(s) 93, 105, 144, 235, 298
DpnI GATC 2 cut(s) 149, 215
DpnII GATC 2 cut(s) 147, 213
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 3 cut(s) 3, 157, 284
EarI CTCTTC 3 cut(s) 3, 157, 284
Eco130I CCWWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 2 cut(s) 7, 96
FaeI CATG 2 cut(s) 79, 205
FaiI YATR 4 cut(s) 77, 203, 336, 365
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 2 cut(s) 75, 201
Fnu4HI GCNGC 2 cut(s) 81, 330
Fsp4HI GCNGC 2 cut(s) 81, 330
GlaI GCGC 1 cut(s) 279
GluI GCNGC 2 cut(s) 81, 330
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 131
HhaI GCGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 79, 205
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 4 cut(s) 134, 140, 272, 305
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 78
Hpy188I TCNGA 5 cut(s) 28, 100, 139, 147, 243
Hpy188III TCNNGA 1 cut(s) 322
HpyCH4III ACNGT 2 cut(s) 90, 369
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 3 cut(s) 21, 267, 346
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 110, 119, 335
HpyF3I CTNAG 5 cut(s) 93, 105, 144, 235, 298
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 2 cut(s) 79, 205
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 2 cut(s) 147, 213
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 5 cut(s) 123, 144, 202, 222, 266
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 2 cut(s) 91, 339
MaeII ACGT 1 cut(s) 16
MalI GATC 2 cut(s) 149, 215
MboI GATC 2 cut(s) 147, 213
MboII GAAGA 4 cut(s) 20, 144, 298, 301
MflI RGATCY 1 cut(s) 147
MluCI AATT 1 cut(s) 222
MlyI GAGTC 2 cut(s) 149, 281
MnlI CCTC 7 cut(s) 128, 135, 167, 190, 244, 287, 295
MspI CCGG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 80, 110, 119, 335
NcoI CCATGG 1 cut(s) 75
NdeII GATC 2 cut(s) 147, 213
NlaIII CATG 2 cut(s) 79, 205
NspI RCATGY 1 cut(s) 205
PfeI GAWTC 2 cut(s) 134, 305
PkrI GCNGC 2 cut(s) 82, 331
PleI GAGTC 2 cut(s) 148, 280
PpsI GAGTC 2 cut(s) 148, 280
PstI CTGCAG 1 cut(s) 348
PsuI RGATCY 1 cut(s) 147
SatI GCNGC 2 cut(s) 81, 330
Sau3AI GATC 2 cut(s) 147, 213
SchI GAGTC 2 cut(s) 149, 281
SetI ASST 4 cut(s) 19, 42, 241, 331
SfaNI GCATC 2 cut(s) 91, 339
SfcI CTRYAG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 222
SsiI CCGC 1 cut(s) 81
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 90, 369
TaiI ACGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 212, 321
TasI AATT 1 cut(s) 222
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 134, 305
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 263
XceI RCATGY 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.