Rroxscaffold_4G00324660

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
56218352 .. 56221238
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324660.1

Sequence Viewer

Length: 303 bp
ATGGCTGCCTCACCGCCTCACTCCGATGCTCAGTTGACTCTCCTCCCTCCTCCTCCTCCTCCGCCGGAATCCGATTCTCAGATCTCTTCCCTCCTTTACGAGATTTCGCAACAAGTTCAAGCAGAAATGGAGGACATGCTCAAGTCGATCAGGGAAATTGATGAATACTCTGCTCAGATAAATGAAGAGATTGACAAGTGCAAGGAATCTGCGCTCGAGAAGAAGAGAGGCTTAGACGAAACCAAAGAACAAGTCGAGAAAGCTGCTTATGCCGTTTTGCAGATGCTCAACAACAGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.2

Weight (kDa)

4.48

Isoelectric Point (pI)

63.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 62
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 5, 263
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 3
AvaI CYCGRG 1 cut(s) 215
BbvI GCAGC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BglII AGATCT 1 cut(s) 81
BisI GCNGC 2 cut(s) 6, 264
BlsI GCNGC 2 cut(s) 7, 265
BmeT110I CYCGRG 1 cut(s) 215
BmsI GCATC 2 cut(s) 16, 273
BpuEI CTTGAG 1 cut(s) 125
BseMII CTCAG 3 cut(s) 44, 92, 188
BseRI GAGGAG 5 cut(s) 32, 39, 42, 45, 48
BseXI GCAGC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 215
Bsp143I GATC 2 cut(s) 81, 147
BspACI CCGC 2 cut(s) 14, 62
BspCNI CTCAG 3 cut(s) 43, 91, 187
BssMI GATC 2 cut(s) 81, 147
Bst6I CTCTTC 3 cut(s) 91, 180, 218
BstDEI CTNAG 4 cut(s) 30, 78, 174, 232
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 2 cut(s) 84, 150
BstMBI GATC 2 cut(s) 81, 147
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
CfoI GCGC 1 cut(s) 214
CviAII CATG 1 cut(s) 136
CviJI RGCY 3 cut(s) 5, 231, 263
CviKI_1 RGCY 3 cut(s) 5, 231, 263
DdeI CTNAG 4 cut(s) 30, 78, 174, 232
DpnI GATC 2 cut(s) 83, 149
DpnII GATC 2 cut(s) 81, 147
Eam1104I CTCTTC 3 cut(s) 91, 180, 218
EarI CTCTTC 3 cut(s) 91, 180, 218
EciI GGCGGA 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 215
FaeI CATG 1 cut(s) 139
FaiI YATR 3 cut(s) 137, 270, 301
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 6, 264
Fsp4HI GCNGC 2 cut(s) 6, 264
GlaI GCGC 1 cut(s) 213
GluI GCNGC 2 cut(s) 6, 264
HapII CCGG 1 cut(s) 65
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 4 cut(s) 37, 68, 74, 206
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 4 cut(s) 25, 73, 81, 177
Hpy188III TCNNGA 2 cut(s) 217, 256
Hpy8I GTNNAC 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 201, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 4 cut(s) 30, 78, 174, 232
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 2 cut(s) 81, 147
LpnPI CCDG 2 cut(s) 78, 136
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 2 cut(s) 16, 273
MalI GATC 2 cut(s) 83, 149
MboI GATC 2 cut(s) 81, 147
MboII GAAGA 4 cut(s) 78, 197, 232, 235
MflI RGATCY 1 cut(s) 81
MluCI AATT 1 cut(s) 156
MlyI GAGTC 1 cut(s) 31
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 2 cut(s) 81, 147
NlaIII CATG 1 cut(s) 139
NspI RCATGY 1 cut(s) 139
PaeR7I CTCGAG 1 cut(s) 215
PfeI GAWTC 3 cut(s) 68, 74, 206
PkrI GCNGC 2 cut(s) 7, 265
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 2 cut(s) 6, 264
Sau3AI GATC 2 cut(s) 81, 147
SchI GAGTC 1 cut(s) 31
SetI ASST 1 cut(s) 265
SfaNI GCATC 2 cut(s) 16, 273
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 2 cut(s) 140, 215
SmoI CTYRAG 2 cut(s) 140, 215
Sse9I AATT 1 cut(s) 156
SsiI CCGC 2 cut(s) 14, 62
TaqI TCGA 3 cut(s) 146, 216, 255
TasI AATT 1 cut(s) 156
TfiI GAWTC 3 cut(s) 68, 74, 206
TseI GCWGC 2 cut(s) 5, 263
TspDTI ATGAA 2 cut(s) 177, 198
XceI RCATGY 1 cut(s) 139
XhoI CTCGAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.