Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032271.1

Orthogroup ID

OG0006779

Physical Location & Seq

Genomic Coordinates Forward (+)

654 .. 1104

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032271.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atggctgcctcaccgcctcagtccgatgctcagcttactctcctccctcctcctccgccggaatccgactctcagatctcttccttcctttacgagatttcgcaacaagttcaagcagaaatggaggacatgctcaagtccgtcagggaaattgatgaaaactctgctcagataaatgaagagattgaaaagtgcaaggaatctgcgctcgagaagaagagaggcttagacgaaaccaaagaacaagtcgagaaagctgcttatgccgttttgcagatgctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.52

Weight (kDa)

4.31

Isoelectric Point (pI)

74.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25570 AT5G25570 AT5G25570
fragaria_vesca	FvH4_7g03290 FvH4_7g03290 FvH4_7g03290
malus_domestica	MD08G1134800.v1.1
prunus_persica	Prupe.1G464700_v2.0.a1 Prupe.1G464700_v2.0.a1 Prupe.3G140100_v2.0.a1 Prupe.3G140100_v2.0.a1 Prupe.3G140100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0325561
rosa_laevigata	RLG00000030131
rosa_multiflora	Rmu_sc0001986.1_g000027 Rmu_sc0006722.1_g000016 Rmu_sc0032271.1_g000001 Rmu_ssc0000267.1_g000002
rosa_roxburghii	Rroxscaffold_4G00324660
rosa_rugosa	Rorug01G0052800
rosa_samantha	Rh1AG068600 Rh1BG056000 Rh1CG068900 Rh1DG073700 Rh1DG151000
rosa_wichuraiana	Rw1G005680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 56
AgsI	TTSAA	2 cut(s)	113, 188
AluBI	AGCT	2 cut(s)	34, 257
AluI	AGCT	2 cut(s)	34, 257
Ama87I	CYCGRG	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	5, 257
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
AspLEI	GCGC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	3
AvaI	CYCGRG	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	251
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	2 cut(s)	6, 258
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	2 cut(s)	7, 259
BmeT110I	CYCGRG	1 cut(s)	209
BmsI	GCATC	2 cut(s)	16, 267
Bpu1102I	GCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	119
BseMII	CTCAG	4 cut(s)	32, 44, 86, 182
BseRI	GAGGAG	3 cut(s)	32, 39, 42
BseXI	GCAGC	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	75
Bsp1720I	GCTNAGC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	14, 56
BspCNI	CTCAG	4 cut(s)	31, 43, 85, 181
BssMI	GATC	1 cut(s)	75
Bst6I	CTCTTC	3 cut(s)	85, 174, 212
BstDEI	CTNAG	5 cut(s)	18, 30, 72, 168, 226
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
CfoI	GCGC	1 cut(s)	208
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	4 cut(s)	5, 34, 225, 257
CviKI_1	RGCY	4 cut(s)	5, 34, 225, 257
DdeI	CTNAG	5 cut(s)	18, 30, 72, 168, 226
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	3 cut(s)	85, 174, 212
EarI	CTCTTC	3 cut(s)	85, 174, 212
EciI	GGCGGA	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	209
FaeI	CATG	1 cut(s)	133
FaiI	YATR	2 cut(s)	131, 264
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	6, 258
Fsp4HI	GCNGC	2 cut(s)	6, 258
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	6, 258
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	3 cut(s)	62, 68, 200
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	3
Hpy188I	TCNGA	4 cut(s)	25, 67, 75, 171
Hpy188III	TCNNGA	2 cut(s)	211, 250
HpyAV	CCTTC	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	195, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	5 cut(s)	18, 30, 72, 168, 226
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	75
LpnPI	CCDG	2 cut(s)	72, 130
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	2 cut(s)	16, 267
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	4 cut(s)	72, 191, 226, 229
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	8 cut(s)	19, 27, 53, 57, 60, 63, 118, 215
MspI	CCGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	1 cut(s)	133
NspI	RCATGY	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	62, 200
PkrI	GCNGC	2 cut(s)	7, 259
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	75
SatI	GCNGC	2 cut(s)	6, 258
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	62
SetI	ASST	2 cut(s)	36, 259
SfaNI	GCATC	2 cut(s)	16, 267
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	2 cut(s)	134, 209
SmoI	CTYRAG	2 cut(s)	134, 209
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	2 cut(s)	14, 56
TaqI	TCGA	2 cut(s)	210, 249
TasI	AATT	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	62, 200
TseI	GCWGC	2 cut(s)	5, 257
TspDTI	ATGAA	2 cut(s)	171, 192
TspGWI	ACGGA	1 cut(s)	130
XceI	RCATGY	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.